mRNA_16349 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177729
Unique NamemRNA_16349
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A835ZAP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP8_9STRA)

HSP 1 Score: 248 bits (633), Expect = 3.780e-74
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 MQPLAAVTLLGSAISPPYEDDTSQHPVPGKEGAVGGKRKRGKSSGGKSAKPARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCEL 351
            MQPLAAVTLLGSAISPPYEDDTSQHPVPGKEGAVGGKRKRGKSSGGKSAKPARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCEL
Sbjct:    1 MQPLAAVTLLGSAISPPYEDDTSQHPVPGKEGAVGGKRKRGKSSGGKSAKPARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCEL 117
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BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A835YL77_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL77_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.580e-60
Identity = 96/116 (82.76%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:    1 MQPLAAVTLLGSAISPPYEDDTSQHPVPGKEGAVGGKRKRGKSSGGKSAKPARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCE 348
            M PLA VTLLGS+I+PP  DDTSQHP PGKEGAV GKRKRGK SGGKSA+PA+TCPVPDCGKPAKRKWCEDHRHYK+CRAEGCEK +TYGI G GAQWCITHKEEGME+V+ K+CE
Sbjct:    1 MPPLATVTLLGSSINPPCGDDTSQHPKPGKEGAVSGKRKRGKRSGGKSAEPAKTCPVPDCGKPAKRKWCEDHRHYKICRAEGCEKLTTYGITGAGAQWCITHKEEGMENVVCKQCE 116
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BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A835Z3T1_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T1_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.770e-36
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:   88 KEGAVGGKRKRGKSSGGKSAKPARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCE 348
            K GAVGGKRKRG+SSG KSA+PA+ C VP CG PAK KWCEDHR+YK+CRAEGCEKRS YGI G GAQ CITH EEGME+VI+KRCE
Sbjct:   13 KRGAVGGKRKRGQSSGAKSAQPAKKCLVPGCGNPAKHKWCEDHRYYKICRAEGCEKRSAYGITGAGAQRCITHNEEGMENVISKRCE 99
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BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A835YYI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.240e-29
Identity = 63/111 (56.76%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:    7 PLAAVTLLGSAISPPYEDDTSQHPVPGKEGAVGGKRKRGKSSGGKSAKPARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINK 339
            PLA VTLLG+ I PP +DD S+   PG+EG VGGKRKRG S+ GK AK A+ C V  C   AKRKWC +H+H+KVCR +GC K  +Y I G GAQWCI HK   M    +K
Sbjct:  349 PLAEVTLLGNTIQPPCQDDCSRPSAPGQEGVVGGKRKRGSSNPGKRAKTAKQCAVKGCSNLAKRKWCGEHKHFKVCRQQGCSKAPSYNIRGVGAQWCIEHKTGDMHTAKSK 459
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BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A836CFL9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.320e-17
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  169 VPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCEL 351
            +P+C   AK KWC++HR Y +CRA+GCEK S YGIIGGG QWC+ HK   ME V  K CEL
Sbjct:    1 MPNCCNSAKLKWCDEHRSYVICRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCEL 61
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BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A836CPB0_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPB0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.230e-16
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:  154 ARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRC 345
            A+ CPV DC KPA RKWC++H+    C+ +GC K+ +Y I G GAQ+C  H EEGMED+++KRC
Sbjct:    6 AKACPVSDCNKPAARKWCDEHKRLDECKKDGCNKKPSYNIPGAGAQYCKNHAEEGMEDIVHKRC 69
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BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A836CF86_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF86_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.670e-12
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:  163 CPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRC 345
            C  P C   A  KWC+DH   + CR EGC KR+ +   G GAQWC THK+EGM DV++  C
Sbjct:    5 CCAPGCHNTAAHKWCQDHLSSRTCRKEGCTKRTRFNHRGQGAQWCGTHKDEGMIDVVSSTC 65
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BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A835Z4C5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.710e-9
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  154 ARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVIN 336
            ++ C  P C   A RKWCE+H+ +K CRA  C   + Y + G G QWC  H+ E M DV+N
Sbjct:   75 SKECAFPGCTGHAPRKWCEEHKSHKKCRAPACTNTAGYNLHGAGGQWCKAHRGEDMVDVVN 135
[Close]
BLAST of jgi.p|Trimin1|177729 vs. uniprot
Match: A0A835YV81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV81_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.790e-8
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  232 CRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCEL 351
            CRA+GCEKRS YGIIGGG QWC+ HK   M  V ++ CEL
Sbjct:    1 CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCEL 40
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177729 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835ZAP8_9STRA3.780e-74100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YL77_9STRA1.580e-6082.76Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z3T1_9STRA4.770e-3678.16EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835YYI8_9STRA3.240e-2956.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFL9_9STRA1.320e-1760.66Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CPB0_9STRA1.230e-1654.69EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A836CF86_9STRA3.670e-1250.82Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4C5_9STRA6.710e-944.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YV81_9STRA1.790e-865.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_157contigContig_157:59319..60644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177729|e_gw1.157.33.1
Hectar predicted targeting categoryother localisation
TranscriptId178051
TrackFilteredModels1
ProteinId177729
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177729gene_16349Tribonema minus UTEX_B_3156 geneContig_157 59319..60644 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16349_1exon_16349_1Tribonema minus UTEX_B_3156 exonContig_157 59319..60644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16349CDS_16349Tribonema minus UTEX_B_3156 CDSContig_157 59319..60644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177729Trimin1|177729|e_gw1.157.33.1Tribonema minus UTEX_B_3156 polypeptideContig_157 59319..60644 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16349 ID=mRNA_16349|Name=jgi.p|Trimin1|177729|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1326bp|location=Sequence derived from alignment at Contig_157:59319..60644- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCGCTGGCCGCCGTCACACTCCTCGGCAGCGCCATAAGCCCTCC
ATACGAAGACGACACCAGTCAACACCCAGTGCCTGGAAAAGAGGGGGCGG
TTGGCGGCAAACGCAAGCGAGGCAAGAGCAGCGGGGGTAAGTCTGCTAAA
CCTGCCAGAACGTGCCCGGTACCAGACTGCGGCAAGCCAGCGAAACGCAA
GTGGTGTGAAGACCACCGCCATTACAAGGTTTGCCGCGCAGAGGGGTGCG
AAAAACGGTCTACATACGGCATAATTGGTGGAGGAGCACAATGGTGCATA
ACACACAAGGAGGAGGGCATGGAAGATGTGATCAACAAGCGGTGCGAGCT
CTGCACGAAGCAACCAAGCTTCGGGTATGATTGGAGGCGTCCTCTGCGCT
GCGCCGATCACAGGGAGGAAGGCATGGAGGACGTGGTCAATAAGCGGTGC
GAGCAATGCAGCAAGCACCCAAGCTTCGGGTATGATTGGATGCGCCCTCT
GCGCTGTGCCGATCACAAGGAGGAGGGCATGGATGATGTCAGTAGCAAAC
AGTGTGAGCAATGCAGCAAGCGACCAAGCTTCGGGTATGATTGGAGGCGT
CCTCTGCGCTGCGCCGATCACAGGGAGGAAGGCATGGAGGACGTGATCAA
TAAGCGATGCGAGCAATGCAGCAAGCAACCGAGCTTCGGGTATGATTGGA
GGCGTCCTCTGCGCTGCGCCGATCACAGGGAGGAAGGCATGGAGAATGTA
GTTAGCAAGCGGTGCGAGCAATGCAGCAAGCAACCAAGCTTTGGGTATGA
TTGGATGCGCCCTCTGCGCTGCGCCGATCACAAGGAGGAGGGCATGGAGG
ATGTAGTTAGCAAGCAGTGCGAGCAATGCAGCAAGCGTCCCAGCTTGGGG
TATGATTGGATGCGCCCTTTAAGCTGCGCAGATCACAGGGAGGAGGGCAT
GGAGAATGTAGTTGACAAGCGGTGCGAGCAATGCAGCAAGCAACCAAACT
TTGGGTATAATTGGAAGCGCCCTCTGCGCTGCGCTGACCACAGGGAGGAG
GGCATGGAGGATGTGATCAATAAGCGGTGCGAGCAATGCAGCAAGCAACC
AAGCTTCGGGTATGATTGGAAGCGCCCTCTGCGCTGCGCTGACCACAGGG
AAGAGGACATGGAGGATGTAGTAAGTAAGCAGTGTGAGAAATGCAGCAAG
CAACCAAGCTTCGGTTTTAATTGGAGGCGTCCTCTGCGCTGCGCCGATCA
CAGGGAAGAAGGCATGGAAGGACGTGATCAATCAGCGGTGCGAGCAATGC
AGCAAGCAACCAAGCTTCGGGTGTGA
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protein sequence of jgi.p|Trimin1|177729

>Trimin1|177729|e_gw1.157.33.1 ID=Trimin1|177729|e_gw1.157.33.1|Name=jgi.p|Trimin1|177729|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=442bp
MQPLAAVTLLGSAISPPYEDDTSQHPVPGKEGAVGGKRKRGKSSGGKSAK
PARTCPVPDCGKPAKRKWCEDHRHYKVCRAEGCEKRSTYGIIGGGAQWCI
THKEEGMEDVINKRCELCTKQPSFGYDWRRPLRCADHREEGMEDVVNKRC
EQCSKHPSFGYDWMRPLRCADHKEEGMDDVSSKQCEQCSKRPSFGYDWRR
PLRCADHREEGMEDVINKRCEQCSKQPSFGYDWRRPLRCADHREEGMENV
VSKRCEQCSKQPSFGYDWMRPLRCADHKEEGMEDVVSKQCEQCSKRPSLG
YDWMRPLSCADHREEGMENVVDKRCEQCSKQPNFGYNWKRPLRCADHREE
GMEDVINKRCEQCSKQPSFGYDWKRPLRCADHREEDMEDVVSKQCEKCSK
QPSFGFNWRRPLRCADHREEGMEGRDQSAVRAMQQATKLRV*
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mRNA from alignment at Contig_157:59319..60644-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16349 ID=mRNA_16349|Name=jgi.p|Trimin1|177729|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1326bp|location=Sequence derived from alignment at Contig_157:59319..60644- (Tribonema minus UTEX_B_3156 )
ATGCAACCGCTGGCCGCCGTCACACTCCTCGGCAGCGCCATAAGCCCTCC
ATACGAAGACGACACCAGTCAACACCCAGTGCCTGGAAAAGAGGGGGCGG
TTGGCGGCAAACGCAAGCGAGGCAAGAGCAGCGGGGGTAAGTCTGCTAAA
CCTGCCAGAACGTGCCCGGTACCAGACTGCGGCAAGCCAGCGAAACGCAA
GTGGTGTGAAGACCACCGCCATTACAAGGTTTGCCGCGCAGAGGGGTGCG
AAAAACGGTCTACATACGGCATAATTGGTGGAGGAGCACAATGGTGCATA
ACACACAAGGAGGAGGGCATGGAAGATGTGATCAACAAGCGGTGCGAGCT
CTGCACGAAGCAACCAAGCTTCGGGTATGATTGGAGGCGTCCTCTGCGCT
GCGCCGATCACAGGGAGGAAGGCATGGAGGACGTGGTCAATAAGCGGTGC
GAGCAATGCAGCAAGCACCCAAGCTTCGGGTATGATTGGATGCGCCCTCT
GCGCTGTGCCGATCACAAGGAGGAGGGCATGGATGATGTCAGTAGCAAAC
AGTGTGAGCAATGCAGCAAGCGACCAAGCTTCGGGTATGATTGGAGGCGT
CCTCTGCGCTGCGCCGATCACAGGGAGGAAGGCATGGAGGACGTGATCAA
TAAGCGATGCGAGCAATGCAGCAAGCAACCGAGCTTCGGGTATGATTGGA
GGCGTCCTCTGCGCTGCGCCGATCACAGGGAGGAAGGCATGGAGAATGTA
GTTAGCAAGCGGTGCGAGCAATGCAGCAAGCAACCAAGCTTTGGGTATGA
TTGGATGCGCCCTCTGCGCTGCGCCGATCACAAGGAGGAGGGCATGGAGG
ATGTAGTTAGCAAGCAGTGCGAGCAATGCAGCAAGCGTCCCAGCTTGGGG
TATGATTGGATGCGCCCTTTAAGCTGCGCAGATCACAGGGAGGAGGGCAT
GGAGAATGTAGTTGACAAGCGGTGCGAGCAATGCAGCAAGCAACCAAACT
TTGGGTATAATTGGAAGCGCCCTCTGCGCTGCGCTGACCACAGGGAGGAG
GGCATGGAGGATGTGATCAATAAGCGGTGCGAGCAATGCAGCAAGCAACC
AAGCTTCGGGTATGATTGGAAGCGCCCTCTGCGCTGCGCTGACCACAGGG
AAGAGGACATGGAGGATGTAGTAAGTAAGCAGTGTGAGAAATGCAGCAAG
CAACCAAGCTTCGGTTTTAATTGGAGGCGTCCTCTGCGCTGCGCCGATCA
CAGGGAAGAAGGCATGGAAGGACGTGATCAATCAGCGGTGCGAGCAATGC
AGCAAGCAACCAAGCTTCGGGTGTGA
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Coding sequence (CDS) from alignment at Contig_157:59319..60644-

>mRNA_16349 ID=mRNA_16349|Name=jgi.p|Trimin1|177729|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1326bp|location=Sequence derived from alignment at Contig_157:59319..60644- (Tribonema minus UTEX_B_3156 )
ATGCAACCGCTGGCCGCCGTCACACTCCTCGGCAGCGCCATAAGCCCTCC
ATACGAAGACGACACCAGTCAACACCCAGTGCCTGGAAAAGAGGGGGCGG
TTGGCGGCAAACGCAAGCGAGGCAAGAGCAGCGGGGGTAAGTCTGCTAAA
CCTGCCAGAACGTGCCCGGTACCAGACTGCGGCAAGCCAGCGAAACGCAA
GTGGTGTGAAGACCACCGCCATTACAAGGTTTGCCGCGCAGAGGGGTGCG
AAAAACGGTCTACATACGGCATAATTGGTGGAGGAGCACAATGGTGCATA
ACACACAAGGAGGAGGGCATGGAAGATGTGATCAACAAGCGGTGCGAGCT
CTGCACGAAGCAACCAAGCTTCGGGTATGATTGGAGGCGTCCTCTGCGCT
GCGCCGATCACAGGGAGGAAGGCATGGAGGACGTGGTCAATAAGCGGTGC
GAGCAATGCAGCAAGCACCCAAGCTTCGGGTATGATTGGATGCGCCCTCT
GCGCTGTGCCGATCACAAGGAGGAGGGCATGGATGATGTCAGTAGCAAAC
AGTGTGAGCAATGCAGCAAGCGACCAAGCTTCGGGTATGATTGGAGGCGT
CCTCTGCGCTGCGCCGATCACAGGGAGGAAGGCATGGAGGACGTGATCAA
TAAGCGATGCGAGCAATGCAGCAAGCAACCGAGCTTCGGGTATGATTGGA
GGCGTCCTCTGCGCTGCGCCGATCACAGGGAGGAAGGCATGGAGAATGTA
GTTAGCAAGCGGTGCGAGCAATGCAGCAAGCAACCAAGCTTTGGGTATGA
TTGGATGCGCCCTCTGCGCTGCGCCGATCACAAGGAGGAGGGCATGGAGG
ATGTAGTTAGCAAGCAGTGCGAGCAATGCAGCAAGCGTCCCAGCTTGGGG
TATGATTGGATGCGCCCTTTAAGCTGCGCAGATCACAGGGAGGAGGGCAT
GGAGAATGTAGTTGACAAGCGGTGCGAGCAATGCAGCAAGCAACCAAACT
TTGGGTATAATTGGAAGCGCCCTCTGCGCTGCGCTGACCACAGGGAGGAG
GGCATGGAGGATGTGATCAATAAGCGGTGCGAGCAATGCAGCAAGCAACC
AAGCTTCGGGTATGATTGGAAGCGCCCTCTGCGCTGCGCTGACCACAGGG
AAGAGGACATGGAGGATGTAGTAAGTAAGCAGTGTGAGAAATGCAGCAAG
CAACCAAGCTTCGGTTTTAATTGGAGGCGTCCTCTGCGCTGCGCCGATCA
CAGGGAAGAAGGCATGGAAGGACGTGATCAATCAGCGGTGCGAGCAATGC
AGCAAGCAACCAAGCTTCGGGTGTGA
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