mRNA_16330 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177578
Unique NamemRNA_16330
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A835Z8A9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A9_9STRA)

HSP 1 Score: 405 bits (1040), Expect = 6.090e-143
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 
Query:    1 DAAIKAKAYSKEFLASMNTTYAADLRDPGLKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            DAAIKAKAYSKEFLASMNTTYAADLRDPGLKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP
Sbjct:    1 DAAIKAKAYSKEFLASMNTTYAADLRDPGLKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 199
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A835YK35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK35_9STRA)

HSP 1 Score: 298 bits (762), Expect = 2.150e-100
Identity = 141/166 (84.94%), Postives = 153/166 (92.17%), Query Frame = 1 
Query:  100 GSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            GSS D+QMQNFFRKCVTPGAVINVGILGGSISQ  YGYQ+ FIK L +MCPSA++KLY+GAR STPSMTLGYCAVTAMGGPSELDLFISEFT NDGVKYT DGAFSSLPYELMLRSVL+AFPYSPSV+TLHFWG +FTHKTPQA L+KLA RY +SA+SIRDVIWP
Sbjct:    1 GSSADVQMQNFFRKCVTPGAVINVGILGGSISQFGYGYQVTFIKQLAEMCPSAEVKLYNGARSSTPSMTLGYCAVTAMGGPSELDLFISEFTYNDGVKYTTDGAFSSLPYELMLRSVLTAFPYSPSVLTLHFWGLDFTHKTPQAALVKLARRYKVSALSIRDVIWP 166
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A836C984_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C984_9STRA)

HSP 1 Score: 249 bits (635), Expect = 2.110e-78
Identity = 116/186 (62.37%), Postives = 147/186 (79.03%), Query Frame = 1 
Query:   49 MNTTYAADLRDPG---LKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            M  TY ADLR PG   L  TG++TD Q+QNFFRKCVTPG+ IN+GILGGSISQM  GYQ+ ++ +L+ MCP++ +KLY+GAR ST SMTLGYCA T++GGP ++DLF++EFTLNDG KYT DG FSS  YE +LR+ L+AF Y+P+++TLH WGF F + +PQ  L+ LA RY LSAISIRD +WP
Sbjct:    1 MTATYPADLRTPGCNCLNNTGATTDTQLQNFFRKCVTPGSTINLGILGGSISQMLAGYQVTWLAYLQQMCPTSTVKLYNGARPSTGSMTLGYCAKTSVGGPEQVDLFVTEFTLNDGSKYTTDGQFSSQSYEFLLRNTLTAFQYAPAIITLHLWGFPFVYDSPQPALVALAQRYALSAISIRDAVWP 186
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A836C8S8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S8_9STRA)

HSP 1 Score: 228 bits (582), Expect = 5.820e-73
Identity = 103/170 (60.59%), Postives = 133/170 (78.24%), Query Frame = 1 
Query:   88 LKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            L  TG++TD Q+ NFFRKCVTPG+ IN+GILGGSISQ   GYQ+ +I  L+ MCP + I LYDGAR ST SMTLG+CA  ++G P E+DLF+SEFTLNDG +YT DGAF+S  YE +LR+V++ F Y+P+++TLHFWG  F +++ Q DL+ LA RY LSAIS+RD +WP
Sbjct:    1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWP 170
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A836CAR2_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR2_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.030e-49
Identity = 96/201 (47.76%), Postives = 137/201 (68.16%), Query Frame = 1 
Query:    4 AAIKAKAYSKEFLASMNTTY-AADLRDPGLKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKY--TADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            AA + KA++ +F+  M++ Y +A L    LK  G++TD Q++NF+R+CVT GA I++GILGGSIS    GY   F   + +MCPSA + ++ GAR +  S+TLG CA TAM   ++LDLF+++FTLND  KY  T  G F+S PYE+MLR+VL+ F   P+V  L+FWG  FT+ T Q +L  LA  Y+ + IS+RD++WP
Sbjct: 1258 AAYEVKAWAGKFMQQMHSNYTSAALFQNSLKTQGANTDKQLENFYRRCVTSGATIHIGILGGSISVDKEGYVGMFANRVREMCPSAYVAVHSGARNAAGSLTLGMCASTAML-TTKLDLFVADFTLNDSYKYKHTIKGIFTSTPYEIMLRNVLTQFEVPPAVFNLYFWGGAFTYDTQQDELDTLAKLYSTTGISLRDLVWP 1457
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.850e-41
Identity = 83/201 (41.29%), Postives = 125/201 (62.19%), Query Frame = 1 
Query:    1 DAAIKAKAYSKEFLASMNTTYAAD-LRDPGLKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTAD-GAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            DAA   + +  + +  M+TTY  D L +  LK+ G+ TD Q+   F KC+TPG+ I +G LGGSI+ +   Y     + +  MCP A ++ ++GAR S  ++TLG CA T       LDL +SEF+LND   YTAD G FS+LP+EL+ R++LSA+  +P+V  L FWG +F+H + Q     +   Y+++ IS+RD++WP
Sbjct:   51 DAATATQLWVAKHIRHMHTTYPPDRLFENSLKHRGAITDQQLHPLFLKCITPGSTIRIGALGGSITHLPSSYIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCARTVTA--PALDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPAPAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWP 249
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A835Z775_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z775_9STRA)

HSP 1 Score: 147 bits (371), Expect = 9.150e-41
Identity = 75/170 (44.12%), Postives = 112/170 (65.88%), Query Frame = 1 
Query:   91 KYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTA-DGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            +  G+ST+ Q++N F KCVTPGA INVG +GGSI++ D  +  NF   L  +CP A +++++GAR S  ++TLG CA   M    ELD+ + EF+LND  +YT  +G FSSLPYEL  R+VL+    +P+V  + FWG +FT+ + Q    ++   Y ++ IS+RD++WP
Sbjct:    8 RVAGASTEAQLRNVFLKCVTPGADINVGAIGGSITEHDDSWAGNFSALLSHLCPRAQVRMHNGARASHGALTLGLCARAVMA--PELDIAMLEFSLNDQGQYTLPNGTFSSLPYELATRTVLTGTDPTPAVFGISFWGRSFTYDSAQPYHEEVHKLYGVTGISLRDMVWP 175
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A836CE21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE21_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.340e-39
Identity = 77/195 (39.49%), Postives = 120/195 (61.54%), Query Frame = 1 
Query:   16 AKAYSKEFLASMNTTYAADLRDPGLKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTA-DGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            A A++   + +M+      L    L ++G  TDLQ++ FFRKC  PG+VINVG +GGS +Q+ + +    +  L++MCP   +  ++GARGS  S+TLG C  T      +LD+  +EF LND  +Y   +G  SS PYELM R++L+ +  +P+V  L  WG +FT  + QADL  +   Y+++A+S+RD++WP
Sbjct:   50 AAAFAAAHIDAMHQRPPDQLFRNSLVHSGGLTDLQLEVFFRKCANPGSVINVGAIGGSNTQLPWSFLWPVVDLLQEMCPHTTVTGFNGARGSHGSLTLGMCIKTVTA--PQLDIAFAEFALNDQGQYRRQNGRTSSFPYELMTRTMLANYDPAPAVFNLFMWGRSFTFDSAQADLEPVVEHYDVTALSLRDLVWP 242
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A835YI83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI83_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.010e-39
Identity = 81/192 (42.19%), Postives = 113/192 (58.85%), Query Frame = 1 
Query:   25 YSKEFLASMNTTYAADLR-DPGLKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            Y+ +F+  M  ++  DL     LK  G+ TD Q++N FRKCV  G  I +G                      +MCP +++ L++G+RGST S+TLG CA TAM     +D+FI+EF LND  +YT    FSSLPYELMLR  L+AF   P++  L+FWG   T+KT Q + + L  +Y L+ ISIRD++WP
Sbjct:   67 YASDFITMMQASFPPDLLFKNSLKDDGAVTDRQLENVFRKCVK-GDTIRLG----------------------EMCPLSEVILHNGSRGSTGSLTLGMCATTAMD-TKAVDIFIAEFALNDTTQYTLKTGFSSLPYELMLRDALTAFEVPPAIFNLYFWGPGLTYKTGQPEYVALEKKYQLTGISIRDLVWP 234
[Close]
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Match: A0A836CCV4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.330e-39
Identity = 76/171 (44.44%), Postives = 111/171 (64.91%), Query Frame = 1 
Query:   88 LKYTGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYT-ADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 597
            L + G  TDLQ++ FFRKCVT G+VINVG +GGS +Q+ + +    +  L++MCP   +  ++GARGS  S+TLG C  T      ELD+  +EF LND  +Y   +G  SS PYELM R++L+ +  +P+V +L  WG NF   + QADL  +   YN++A+S+RD++WP
Sbjct:   86 LVHRGGITDLQLEIFFRKCVTAGSVINVGAIGGSNTQLPWSFLWPVVDMLQEMCPKTTVTGFNGARGSHGSLTLGMCVKTVTA--PELDIAFAEFALNDEGQYRHQNGNTSSFPYELMTRTMLANYDPAPAVFSLFMWGRNFKFDSAQADLEPIVEYYNVTALSLRDLVWP 254
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177578 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A835Z8A9_9STRA6.090e-143100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YK35_9STRA2.150e-10084.94Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C984_9STRA2.110e-7862.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8S8_9STRA5.820e-7360.59Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CAR2_9STRA1.030e-4947.76RanBP2-type domain-containing protein n=1 Tax=Trib... [more]
A0A835ZKB1_9STRA2.850e-4141.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z775_9STRA9.150e-4144.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE21_9STRA1.340e-3939.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI83_9STRA4.010e-3942.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCV4_9STRA4.330e-3944.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_154contigContig_154:221485..223530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177578|e_gw1.154.4.1
Max annot lvl554065.XP_005851305.1|-
EggNOG OGs2ERWB@1|root,2SUK1@2759|Eukaryota
Evalue6.7e-05
Seed ortholog554065.XP_005851305.1
Hectar predicted targeting categoryother localisation
TranscriptId177900
TrackFilteredModels1
ProteinId177578
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177578gene_16330Tribonema minus UTEX_B_3156 geneContig_154 221485..223530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177578Trimin1|177578|e_gw1.154.4.1Tribonema minus UTEX_B_3156 polypeptideContig_154 221485..223530 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16330_2exon_16330_2Tribonema minus UTEX_B_3156 exonContig_154 221485..221691 -
exon_16330_1exon_16330_1Tribonema minus UTEX_B_3156 exonContig_154 223138..223530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16330CDS_16330Tribonema minus UTEX_B_3156 CDSContig_154 223138..223530 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16330 ID=mRNA_16330|Name=jgi.p|Trimin1|177578|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=600bp|location=Sequence derived from alignment at Contig_154:221485..223530- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGCCGCCATCAAGGCGAAAGCCTATTCGAAAGAGTTCTTGGCCAGCAT
GAATACCACCTACGCTGCAGACCTGCGCGACCCAGGCCTCAAGTACACAG
GCAGCAGCACCGACTTGCAGATGCAGAATTTCTTTCGCAAGTGCGTGACG
CCGGGGGCGGTTATCAACGTGGGCATATTGGGAGGTAGCATCTCGCAGAT
GGACTACGGCTATCAGATCAACTTCATCAAGCATCTGGAAGACATGTGCC
CGTCCGCCGACATTAAACTCTACGATGGCGCTCGTGGCAGCACTCCGTCG
ATGACCTTGGGTTACTGCGCCGTGACTGCCATGGGGGGGCCCAGCGAGCT
CGATTTGTTCATTTCGGAATTTACTTTAAACGATGGCGTGAAGTACACTG
CCGACGGTGCGTTTAGCTCGCTGCCCTACGAGCTCATGCTGCGCAGCGTC
CTGAGCGCGTTCCCGTACTCGCCGAGCGTCATGACGCTACACTTCTGGGG
CTTCAACTTCACGCACAAGACGCCCCAGGCCGACCTGCTCAAGCTCGCGC
ACCGTTACAACCTTTCTGCAATCAGCATCCGCGACGTCATCTGGCCGTAG
back to top

protein sequence of jgi.p|Trimin1|177578

>Trimin1|177578|e_gw1.154.4.1 ID=Trimin1|177578|e_gw1.154.4.1|Name=jgi.p|Trimin1|177578|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
DAAIKAKAYSKEFLASMNTTYAADLRDPGLKYTGSSTDLQMQNFFRKCVT
PGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPS
MTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSV
LSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP*
back to top

mRNA from alignment at Contig_154:221485..223530-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16330 ID=mRNA_16330|Name=jgi.p|Trimin1|177578|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2046bp|location=Sequence derived from alignment at Contig_154:221485..223530- (Tribonema minus UTEX_B_3156 )
GATGCCGCCATCAAGGCGAAAGCCTATTCGAAAGAGTTCTTGGCCAGCAT
GAATACCACCTACGCTGCAGACCTGCGCGACCCAGGCCTCAAGTACACAG
GCAGCAGCACCGACTTGCAGATGCAGAATTTCTTTCGCAAGTGCGTGACG
CCGGGGGCGGTTATCAACGTGGGCATATTGGGAGGTAGCATCTCGCAGAT
GGACTACGGCTATCAGATCAACTTCATCAAGCATCTGGAAGACATGTGCC
CGTCCGCCGACATTAAACTCTACGATGGCGCTCGTGGCAGCACTCCGTCG
ATGACCTTGGGTTACTGCGCCGTGACTGCCATGGGGGGGCCCAGCGAGCT
CGATTTGTTCATTTCGGAATTTACTTTAAACGATGGCGTGAAGGTAAGAG
CAATCAGGTTTTTTGTAAGAGCCACTATCGATTCCTGTTGCTGTGGTGCC
ATAGTTCATGCTGGCGTCACTACTCAGTCATTCGGAATGATTGAATCGGA
TTGAATGATCAGATGGCATTACTTTGACACAGTCACCACATGTCATACTA
TGAACAACTCAATGACATTGATCTTTTTGACAATATTCATACGATAGTAT
GATCATCATGATGACAATCATCAGTCGGAAAGTTGAGTCAGATTCTAAAG
TTGCAATTATTACGCTTCAAGCTGTTCAAGTTGCCAACAAACTTTAAGAC
TTAAGTCTTTTAGTGCAAGTTGAACTTCCTGTGAACATCGTGCACGATGC
GAATTGTAAAGCAAGCTAACTTTCAGAAATCGAACAGGCAACTGCTGTAG
TGACTGCTTGAGCACCTTCAAGTTGCAAATTTAATGCTCTGCAGTACCCA
GTCTGGCAGTAACTTCAGAGTGCTATTATGACTCATCAGATGTCATATTC
AATTGAATCAGATTTATGATAATGATTGTGCCACAGTGTGATTGTTACAG
ACTGAGTTACAGACTGAGTACTACGTACTGAAAGTTACAGCCTGAGGTTA
CCATATCATGATCATTATTATGATGTCATAATGTCGAGTGTCACTCAGGC
TGGGCACGCCATGATAGCGTATACTCAGGCTGTGACATGGCTGCAGCCCC
TGCGGCAGCAGCTGCTGCGGCAGCTGCGTGACCACGCATCACGAACACAT
GATCGCGCCTCAGGCTTCAGTATCAGAAGTATACTGAGTCTTTAACAGAG
CACTTCAAGTTGCAGTTACTGTACAGTAATTGTTCAGGGTGCGGTAATAA
TCATTCTTTCGAAGGAAGCTGATGACTCAGAGCGCCGCGACGTCGGACGC
ATCCTTGCACAGCCGCGGCACCGTGACTTGTCGAACACCTTCAAGGCGAA
GCTCATTAAGTCCGAGTTAGTCGATTGATAAGTTTGCTGCCCAAAGGCTT
TAATGATTTCAAAGTGCGACCAAGTTCATGCTGTGCCCAAGGACATCCCG
AACGTGTCTTGCAGTCCTCTGCTTCCAATTTCAATATGCTTGAACTTAAC
AACTCACCTAGGAGTCTGAGCTCTGACTAAAAAACGACCACAGCAACAAG
TCTTGCTGCCTTGCACTCACTGAGGCACTGGCAGTATGTGCTGCCACTTT
TTAGCAACTTGAAGGCTTGACCCAGTTGTATTAAAACACTCGCTGCTTGC
AGCCTAATAACCTAAATGCTTCAGTTGAAGATCCTGCCAGTGTCACACCG
TCTGATGTTGCGGTGCCACCACTCAGCCTGTCAGTGAGTGTCCTTCGAAA
TAGTATAAGACATAATCGCCACTCTGAGCCTGGGCGCATTTGACTTGTTG
CCTGTCACCGTGCTTTTTGACACATTGCCGCTGTTACAGTACACTGCCGA
CGGTGCGTTTAGCTCGCTGCCCTACGAGCTCATGCTGCGCAGCGTCCTGA
GCGCGTTCCCGTACTCGCCGAGCGTCATGACGCTACACTTCTGGGGCTTC
AACTTCACGCACAAGACGCCCCAGGCCGACCTGCTCAAGCTCGCGCACCG
TTACAACCTTTCTGCAATCAGCATCCGCGACGTCATCTGGCCGTAG
back to top

Coding sequence (CDS) from alignment at Contig_154:221485..223530-

>mRNA_16330 ID=mRNA_16330|Name=jgi.p|Trimin1|177578|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_154:221485..223530- (Tribonema minus UTEX_B_3156 )
GATGCCGCCATCAAGGCGAAAGCCTATTCGAAAGAGTTCTTGGCCAGCAT
GAATACCACCTACGCTGCAGACCTGCGCGACCCAGGCCTCAAGTACACAG
GCAGCAGCACCGACTTGCAGATGCAGAATTTCTTTCGCAAGTGCGTGACG
CCGGGGGCGGTTATCAACGTGGGCATATTGGGAGGTAGCATCTCGCAGAT
GGACTACGGCTATCAGATCAACTTCATCAAGCATCTGGAAGACATGTGCC
CGTCCGCCGACATTAAACTCTACGATGGCGCTCGTGGCAGCACTCCGTCG
ATGACCTTGGGTTACTGCGCCGTGACTGCCATGGGGGGGCCCAGCGAGCT
CGATTTGTTCATTTCGGAATTTACTTTAAACGATGGCGTGAAGTACACTG
CCGACGGTGCGTTTAGCTCGCTGCCCTACGAGCTCATGCTGCGCAGCGTC
CTGAGCGCGTTCCCGTACTCGCCGAGCGTCATGACGCTACACTTCTGGGG
CTTCAACTTCACGCACAAGACGCCCCAGGCCGACCTGCTCAAGCTCGCGC
ACCGTTACAACCTTTCTGCAATCAGCATCCGCGACGTCATCTGGCCGTAG
back to top