mRNA_16321 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353287
Unique Name	mRNA_16321
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353287 vs. uniprot
Match: A0A835ZAZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ2_9STRA)

HSP 1 Score: 331 bits (848), Expect = 5.770e-113
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1

Query:    1 MQSGGIRSGAQPQPPRLHPPAQSPAPLADTVDQTTEDVEEEQAATDAFSEADARFAALLDRGTNRNVVRSAPLPSSSSGGXXXXXXXXXXXRRGSMGLGSRWRGRRQKEAQGAAYGQWXXXXXXXXXXXXXXAALLGGGXXXXXXWGPGVVHEDELADLLMAWYYSGYXXXRFIAGREARQREQQRSAWYAQAQAQAAEGASENGPPAQAAPGGD 645
            MQSGGIRSGAQPQPPRLHPPAQSPAPLADTVDQTTEDVEEEQAATDAFSEADARFAALLDRGTNRNVVRSAPLPSSSSGGXXXXXXXXXXXRRGSMGLGSRWRGRRQKEAQGAAYGQWXXXXXXXXXXXXXXAALLGGGXXXXXXWGPGVVHEDELADLLMAWYYSGYXXXRFIAGREARQREQQRSAWYAQAQAQAAEGASENGPPAQAAPGGD
Sbjct:    1 MQSGGIRSGAQPQPPRLHPPAQSPAPLADTVDQTTEDVEEEQAATDAFSEADARFAALLDRGTNRNVVRSAPLPSSSSGGXXXXXXXXXXXRRGSMGLGSRWRGRRQKEAQGAAYGQWXXXXXXXXXXXXXXAALLGGGXXXXXXWGPGVVHEDELADLLMAWYYSGYXXXRFIAGREARQREQQRSAWYAQAQAQAAEGASENGPPAQAAPGGD 215

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353287 vs. uniprot

BLAST of jgi.p|Trimin1|353287 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZAZ2_9STRA	5.770e-113	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_154	contig	Contig_154:153921..159134 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353287\|estExt_Genemark1.C_Ctg_1540016
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-12_000180.1
TranscriptId	353609
Track	FilteredModels1
ProteinId	353287

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353287	gene_16321	Tribonema minus UTEX_B_3156	gene	Contig_154 153921..159134 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353287	Trimin1\|353287\|estExt_Genemark1.C_Ctg_1540016	Tribonema minus UTEX_B_3156	polypeptide	Contig_154 153954..159134 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16321_4	exon_16321_4	Tribonema minus UTEX_B_3156	exon	Contig_154 153921..154086 -
exon_16321_3	exon_16321_3	Tribonema minus UTEX_B_3156	exon	Contig_154 155413..155603 -
exon_16321_2	exon_16321_2	Tribonema minus UTEX_B_3156	exon	Contig_154 157147..157437 -
exon_16321_1	exon_16321_1	Tribonema minus UTEX_B_3156	exon	Contig_154 159102..159134 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_16321	UTR3_16321	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_154 153921..153953 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16321	CDS_16321	Tribonema minus UTEX_B_3156	CDS	Contig_154 159102..159134 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_154:153921..159134-
coding sequence from alignment at Contig_154:153921..159134-

spliced messenger RNA

>mRNA_16321 ID=mRNA_16321|Name=jgi.p|Trimin1|353287|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=681bp|location=Sequence derived from alignment at Contig_154:153921..159134- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCAGGGGGCATACGCTCCGGGGCGCAACCGCAGCCGCCGCGGCT
GCACCCCCCTGCCCAATCACCAGCGCCCTTAGCTGACACCGTCGACCAGA
CCACTGAGGATGTGGAAGAGGAGCAGGCAGCAACAGACGCATTCTCGGAG
GCAGATGCGCGATTCGCGGCACTGCTGGACCGCGGGACGAATAGGAATGT
GGTGCGGTCTGCGCCGCTGCCGAGCAGCAGCAGCGGGGGTGCTGCGGGGG
GGGAGGCAGGAGGGGCAGGGGGGCGGAGGGGGTCTATGGGCCTTGGGAGC
CGCTGGAGAGGCCGGCGCCAAAAGGAGGCACAGGGGGCTGCGTATGGGCA
GTGGCAGCAGCAGCAGCAGCTGCCGCTGCCGCCGCTGCCGCACCCTGCGG
CGCTGCTGGGGGGGGGGGCGGGGGGGGGGCAGGGGTGGGGGCCGGGGGTT
GTGCATGAAGATGAGCTCGCAGACTTGCTCATGGCGTGGTACTACAGCGG
GTACTACAGCGGCAGATTCATTGCAGGGCGCGAGGCGCGTCAACGTGAGC
AACAACGCTCAGCATGGTATGCGCAGGCTCAGGCGCAGGCCGCGGAAGGC
GCTTCCGAGAACGGTCCTCCCGCGCAAGCTGCGCCTGGCGGAGATTAGGC
AGTCAAGGACACGGATGTCATACAATGCACA

protein sequence of jgi.p|Trimin1|353287

>Trimin1|353287|estExt_Genemark1.C_Ctg_1540016 ID=Trimin1|353287|estExt_Genemark1.C_Ctg_1540016|Name=jgi.p|Trimin1|353287|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp
MQSGGIRSGAQPQPPRLHPPAQSPAPLADTVDQTTEDVEEEQAATDAFSE
ADARFAALLDRGTNRNVVRSAPLPSSSSGGAAGGEAGGAGGRRGSMGLGS
RWRGRRQKEAQGAAYGQWQQQQQLPLPPLPHPAALLGGGAGGGQGWGPGV
VHEDELADLLMAWYYSGYYSGRFIAGREARQREQQRSAWYAQAQAQAAEG
ASENGPPAQAAPGGD*

mRNA from alignment at Contig_154:153921..159134-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16321 ID=mRNA_16321|Name=jgi.p|Trimin1|353287|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5214bp|location=Sequence derived from alignment at Contig_154:153921..159134- (Tribonema minus UTEX_B_3156 )
ATGCAATCAGGGGGCATACGCTCCGGGGCGCAAGTGAGTCGCTGCAACAA
GGTAGTCCAGGGACTTAAATAGCCACAAGCTCGCAGTACTCGTCGTCCGT
AGCGCGACTGGATTATATGTATCTGTCGACATGTCATGCCATGCACGATC
TTCCATGGGCTAACATGAAATCTTGATGGATCGCGGAGGACGTCGAAAAC
AGTATGGCTATCGACTTGCAGCAAACACATATCAGCTCGGCTAAAGTGCA
CCAGTATTCATTCTTCAGATCCCGAGTCAACGCTTCCGGACGCTGCTGAT
CCGAAAACATGCCTGATCATGGCCACAGACTGATGCTGAACACTTTATTC
TGCAGCTCAACTACCTGATGATATCTGTACGTGAGACAAACAACTAGCCC
CCCTCGCCACGATGGCACACGTGATATCTTTTCGCAAGAGCTGACCAAAA
CTGTTGCTTCTGTGAACTGTCATGAGTGTAATGCGGTGCCAAGTGCACCC
CACAATCCAAACCTTCCTTGCGACACCATTCACACTCTGTCGTCATTGAT
GTGCCGCCAGAAGCTGTGTGGCAGCCCCCAGTAACATGGTGGTATGATTA
ATCCATGTACTGCTTAGAATCTATTGAGGCGTGTGTCGATCGATATCCCT
CATGCTACATACTGAATGCGTTGTTCTCCTCGGTAATGAGTGTTTATTGC
TGCTTCTCTCGTAAGGCATGAAAAGCGCGCCATGCTAATAGCTAACAGCA
TTCAGTGTGGAAAGCTGAGTGCACACACTTGTTGCGGAAAAGTTGGGGCT
TGCAACACTCTCCAATGGCTCATTTCCCCATGTCTGTAGTTGGAGGTGAA
CATGCTTCGAAGTACTTGTTTTCGCAAAAGCTGGCCTACCGTTTTACACA
CCACTGGCGCATCATCAGTGCCGTGTTGCTGACATGCTGCTGCAGCAATA
CCATCATGAATGCACGTATGCCTTCCTGTGCCATCATTTGAAGCGCCATC
GCAGTGGTTCTGAACATTGGACCAGGCATTAGTAATCCGAAAGCAGAATT
CAGCATGATTACGACTCGGAGCACATGCGCAAAGGAGGATGCTCGCATCG
CCAGCCAAAGTAATAGCATCACAGACAATCTGGAAAAGAGCAGCCCCCCC
CCTGTGGCCTTGACTGTTGTGTGTGCCCTGATTGCCTCACCGGCGCTACT
GTCATCAAGCGTGTTTTGACATCAAGGCATGGGCGCTTGCATCACTATGG
TGATTTGAAAGTCGTGGGCACTTGCATCGCGATGGGGCGATCATGATGCA
AGTACCCATGCACTACGCGAGAGATCACCGATGTACCGCATGCACTCAGA
AACGCAGTGCTTCCGAGGCACCCTGTCTCCTCGCCAGAACCGCCGCAGCC
ACAGCCCTGATTGCCTTACCGGCGCTACTATCATAGAGTGTATGTCGACA
CGATACATGGGCACACGCATAATCATGGTGGTTTCTCGCATGCACTCACA
GCATTGCTTCCGCGGCACCCTCTCCCCTCGCCAGGACCGCCGCAGCCGCA
GCCCCGATTGCCGTACCGGCGCTACCATCATGAAGTGTATGTCGACACGA
TGCATGGGCACACGCATCATCATGGTGATCTCTCGCATGCTCTCAAAAAC
GCACTGCTTCCGCACCACATCCTCTCCCCTCGCCAGAACCGCCGCAGCCG
CAGCCGCCGCGGCTGCACCCCCCTGCCCAATCACCAGCGCCCTTAGCTGA
CACCGTCGACCAGACCACTGAGGATGTGGAAGAGGAGCAGGCAGCAACAG
ACGCATTCTCGGAGGCAGATGCGCGATTCGCGGCACTGCTGGACCGCGGG
ACGAATAGGAATGTGGTGCGGTCTGCGCCGCTGCCGAGCAGCAGCAGCGG
GGGTGCTGCGGGGGGGGAGGCAGGAGGGGCAGGGGGGCGGAGGGGGTCTA
TGGGCCTTGGGAGCCGCTGGAGAGGCCGGCGCCAAAAGGTAGGAGAAACA
GTTGTTTCCGCAGCAAGTTTGAGTTCAACTATTGAACGGTGGGAACAACA
GTTGATGCTGTAGGTTCAAATTTGATAAATAAGTAAAGTTGAAAATTTGA
AGCAAGGCGTAGCAGAGGTGTCACGACATTAGTTCTGTTGTGCGCCTGCC
GAGGACTGTGTGCGTGCTTTACTATATAATCTGTGAAGCGGCAGTCTGGC
TCACTGTGTGGGAAGTGGCCGATCTGGAGAGGTCGGCAAAGCAACTGTTT
TTGCCATAAATTTGATTTTATTGAAGCCAGGGGTGCAGCATTGCTGGCTG
CATGCAGTGAGAGCCCACAGAAAGCCAGGCTTAGTGGGAGATAGGCATCC
GGCGTGTTTTGTCAGTCGAGCTCCAGCTCCGATTCAAGTGAAGTTGAAAT
GTCGAATTCAAAGCAAAGGTGACCGAGGTGTGACGACTAGTTGTGCGCCG
CATCGGGAAATAGTGTGTGTACGTACACTCAACTACTGATTCTGTGAGGC
TGCAGGCGGGCTCAATCTGTGAAGGTGTGACGCTCGCTTGTTCCATATCA
AGCACTTCAAAGTATGTTGTACTCTGAGTACTCCGAAGTATACTGACTTC
CACTTGAGACAGATGCGACATGTACGTGCAGAGAACGAGCACGTGCTTGA
AGCAAGTGTGGCATGGCACCCTGATGGTTACCACCACTTAGGCACTGCAG
GTGTGGAAGCCTTCAGACCGCGTAGTGAATTGGGCCGTTCCTGCCTGCAC
CTGAGACCAAAAGTGTCGGCCAGGCTACACAAGAACTGTACACGGACACA
CGAAGACTGCATACCGTTGATGATGCTTGTTTGCATGATTGTCGCGTTCT
TGTGTTAAGGTTGCTGCTGAGCTGGTGCTTGGAGCATGCCTGCATAGCAC
TGGCCATGCGTCCTCAATGCCACGCTGCAAAGTATTACATAATTGGAAAT
ACCGCACTTCGAGTCATGTGAAGCTCACAAGACAGGGTAGGGTGTGTTGG
CTGCAGTTGTGTGGAATAGTGATCAAGCTACGCAGGTTTACCCGCACGCC
CCTGTGACATTGCTGCACGTGCACGCGCGTTGAGCTCACACGGCCCTAAC
CCTAACCCTAACCCTAAGTTGTCTTGGCTGCACTTGTGTGGAACAGTGCT
CGAGCTGAGCAGGCACAACAGCACATCCGCAAGTGCCAGTGACTTGCTGC
AACTGTGCCGACATGGTGGCACTGTTTGACTTGTGGCCAATGACTGCAGC
AGCGGCGACCACGGTTATTGGTGGAAGGCACTGGCGGCTACCCATCCCTC
GTCACCTAGAGCTCTACGATCTTTCTGATTCGTTTTTCGTTGCGCCGTCG
CTCCTTGCTCATGGTCACCAGCATCGCTTAGACTCACAAGCACTGCTGCT
GCGTCACCGCACCCGCAGCGGCGCCGCAACCGCAATGGCAAGCGCCGCCC
GCAAGCATCCCCCCCCCCACCGCCCCTGGCGCCTGGGGCACTGCCCCCCA
GCACTGGGAATACCCTCAGCAGCCGCAACAGGAGGCACAGGGGGCTGCGT
ATGGGCAGTGGCAGCAGCAGCAGCAGCTGCCGCTGCCGCCGCTGCCGCAC
CCTGCGGCGCTGCTGGGGGGGGGGGCGGGGGGGGGGCAGGGGTGGGGGCC
GGGGGTTGTGCATGAAGATGAGCTCGCAGACTTGCTCATGGCGTGGTACT
ACAGCGGGTACTACAGCGGCAGGTGAGTGGGGTTTAGTGACGGGTACTTC
TTGTACTCCTGCTTGTGTCGTGAGGGCTTTTGTACTTGTAGAAATCTTGA
AGTTTTTGGTACGAAGTACCTAAACGTGATTTGCTGATGGCGTGGTACTA
CAGCGGATACTACAGCGGCAGGTGAGTGGAGTTTTATGAGGCATTGATAC
TTCTTGTACTTACTCGTGCTAGTGTTTTGAGCGTTTTTGACATATGTGTT
TGTGAATGACCACCGCTTTGGAGCAATCTTGAGTTAGTTTGAGGTGCTTA
GACGTGACTTGCTCATGGCGTGATACCACAGCAGATACTGCAGCAGAGGT
GAATGGGCTTCAATGAGGCCTGGCAGATACTGCCAGTTTTGTTGCGTTGA
AAGTGTGAAAAGTGTGCTTTCACAGTGGAACATCATGATGTGATGCTGTA
GTCAGGCACGCAAAGGCTGCTGTGCGGTGCACGAGGTGGCTTCATGAGGA
CACAGCATGTCCATCACCCTCTTAAATTTAGTATGCATCTGCGCCTCAGT
TTTCAACAAGTTGAACTTGTCTGCAGCACTGGCAAGCCAGCAGCACTAGC
ACCACACTGGAACGGTAGTTGTAGCTTCACGCGTGAGCAGCAGCAGCAGA
CCAGTTGTGCATCGTTAGGGTTAGGTTTAGGATTAGGGTTAGGGTTTGGG
TTAGAGGCCGTGCAACGCAAAGTAGCACTGCTTGTCACATCAGAAGTGCC
AGGAAGCAACAATCAATGCTTCCACAATAAACCAGTTTGCGTGTGTGTGC
GGTGATCTGACACGCGTTTTCAGGTGGCACGCAGCATGATATTTCATCAA
AAAGCCAACGTCTGCCCGTGATCATCAGTACAATGAGCATCGTGACCTCC
TCAATGCCAACTGCTGGGAAGATGTGCTCGTGATGACAGCTGCAAATGAA
TACCACATATGGCCATGGTGTAGCTCACCATGCATGCCATGAACGCTGAC
ATGGTCAGCGCGATTAAACCTGGCCATCAACAATCTGCTTGTGTGTTTGC
TGCACGTGATGTGCCAGTGCGGCTTTGTCACATGAGAGGCATACTTCAAT
GTTGCGTACACGTCTTTGTGCCTCCTCATTTGAAGTCATCCAAAGTCATT
CAAAGCATCTCACAACTTGAAGCAGAGCATACCTCAACGCCTTGTACACT
TCTCAAGTACTTAAAGTTGCATGCCTTGAAGTTATTCAAAGTACATCACT
CCGGTAGCGTACACGCTCTTGGTTATGCCCCGTAGTTAATTGACTGTTGT
TAATTGAATGCTGCTCTGTCTTGTTCATTGCTGCTGCTGCCACGACAGAT
TCATTGCAGGGCGCGAGGCGCGTCAACGTGAGCAACAACGCTCAGCATGG
TATGCGCAGGCTCAGGCGCAGGCCGCGGAAGGCGCTTCCGAGAACGGTCC
TCCCGCGCAAGCTGCGCCTGGCGGAGATTAGGCAGTCAAGGACACGGATG
TCATACAATGCACA

Coding sequence (CDS) from alignment at Contig_154:153921..159134-

>mRNA_16321 ID=mRNA_16321|Name=jgi.p|Trimin1|353287|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_154:153921..159134- (Tribonema minus UTEX_B_3156 )
ATGCAATCAGGGGGCATACGCTCCGGGGCGCAACCGCAGCCGCCGCGGCT
GCACCCCCCTGCCCAATCACCAGCGCCCTTAGCTGACACCGTCGACCAGA
CCACTGAGGATGTGGAAGAGGAGCAGGCAGCAACAGACGCATTCTCGGAG
GCAGATGCGCGATTCGCGGCACTGCTGGACCGCGGGACGAATAGGAATGT
GGTGCGGTCTGCGCCGCTGCCGAGCAGCAGCAGCGGGGGTGCTGCGGGGG
GGGAGGCAGGAGGGGCAGGGGGGCGGAGGGGGTCTATGGGCCTTGGGAGC
CGCTGGAGAGGCCGGCGCCAAAAGGAGGCACAGGGGGCTGCGTATGGGCA
GTGGCAGCAGCAGCAGCAGCTGCCGCTGCCGCCGCTGCCGCACCCTGCGG
CGCTGCTGGGGGGGGGGGCGGGGGGGGGGCAGGGGTGGGGGCCGGGGGTT
GTGCATGAAGATGAGCTCGCAGACTTGCTCATGGCGTGGTACTACAGCGG
GTACTACAGCGGCAGATTCATTGCAGGGCGCGAGGCGCGTCAACGTGAGC
AACAACGCTCAGCATGGTATGCGCAGGCTCAGGCGCAGGCCGCGGAAGGC
GCTTCCGAGAACGGTCCTCCCGCGCAAGCTGCGCCTGGCGGAGATTAG