mRNA_16294 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150869
Unique NamemRNA_16294
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|150869 vs. uniprot
Match: A0A836CG19_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG19_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.730e-23
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 
Query:    1 RTCRKEGCTKHASYNHFGAGSQWCCAHKQQNMVDVANPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVSVHKSCARPGCSQQPRF 483
            RTCRKEGCTKHASYNHFGAGSQWCCAHKQQNMVDVANPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVSVHKSCARPGCSQQPRF
Sbjct:    1 RTCRKEGCTKHASYNHFGAGSQWCCAHKQQNMVDVANPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVSVHKSCARPGCSQQPRF 161
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150869 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CG19_9STRA3.730e-23100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_261contigContig_261:74834..75316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150869|gw1.261.44.1
Hectar predicted targeting categoryother localisation
TranscriptId151191
TrackFilteredModels1
ProteinId150869
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150869gene_16294Tribonema minus UTEX_B_3156 geneContig_261 74834..75316 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16294_1exon_16294_1Tribonema minus UTEX_B_3156 exonContig_261 74834..75316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16294CDS_16294Tribonema minus UTEX_B_3156 CDSContig_261 74834..75316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150869Trimin1|150869|gw1.261.44.1Tribonema minus UTEX_B_3156 polypeptideContig_261 74834..75316 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16294 ID=mRNA_16294|Name=jgi.p|Trimin1|150869|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_261:74834..75316- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGACGTGCCGCAAGGAGGGATGTACGAAACACGCAAGCTATAACCACTT
TGGCGCAGGAAGTCAGTGGTGTTGTGCGCACAAGCAACAAAACATGGTAG
ATGTGGCAAATCCAAAATGCCAGGAGCCTGGATGTGCAAAACGCCCGACA
TTTGGAGAAGAGGGGCAGCGAGCGACACACTGTTTGAAACACAAGCTAGC
AGGTGCAATTGATGTCAGTAACCTTCTGTGTGCCGAACCAGGCTGCATGG
TGCACGCAGCGTTTGGGACAGAGAGAAATCGCCCAACTCATTGCAACAAA
CACAAGCTGCCCCGGGCGGTGAACGTTCTCACAGCCCCATGTGCCCAGCC
AGGCTGCTCGACGCTGCCCAGCTTTGGAGTGAAAGGCCAGCGCCCAACAC
ACTGTGCAACACATAGACCACCGGGCACAGTGAGCGTACATAAATCATGT
GCCCGACCAGGATGCTCACAGCAGCCACGCTTT
back to top

protein sequence of jgi.p|Trimin1|150869

>Trimin1|150869|gw1.261.44.1 ID=Trimin1|150869|gw1.261.44.1|Name=jgi.p|Trimin1|150869|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=161bp
RTCRKEGCTKHASYNHFGAGSQWCCAHKQQNMVDVANPKCQEPGCAKRPT
FGEEGQRATHCLKHKLAGAIDVSNLLCAEPGCMVHAAFGTERNRPTHCNK
HKLPRAVNVLTAPCAQPGCSTLPSFGVKGQRPTHCATHRPPGTVSVHKSC
ARPGCSQQPRF
back to top

mRNA from alignment at Contig_261:74834..75316-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16294 ID=mRNA_16294|Name=jgi.p|Trimin1|150869|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_261:74834..75316- (Tribonema minus UTEX_B_3156 )
AGGACGTGCCGCAAGGAGGGATGTACGAAACACGCAAGCTATAACCACTT
TGGCGCAGGAAGTCAGTGGTGTTGTGCGCACAAGCAACAAAACATGGTAG
ATGTGGCAAATCCAAAATGCCAGGAGCCTGGATGTGCAAAACGCCCGACA
TTTGGAGAAGAGGGGCAGCGAGCGACACACTGTTTGAAACACAAGCTAGC
AGGTGCAATTGATGTCAGTAACCTTCTGTGTGCCGAACCAGGCTGCATGG
TGCACGCAGCGTTTGGGACAGAGAGAAATCGCCCAACTCATTGCAACAAA
CACAAGCTGCCCCGGGCGGTGAACGTTCTCACAGCCCCATGTGCCCAGCC
AGGCTGCTCGACGCTGCCCAGCTTTGGAGTGAAAGGCCAGCGCCCAACAC
ACTGTGCAACACATAGACCACCGGGCACAGTGAGCGTACATAAATCATGT
GCCCGACCAGGATGCTCACAGCAGCCACGCTTT
back to top

Coding sequence (CDS) from alignment at Contig_261:74834..75316-

>mRNA_16294 ID=mRNA_16294|Name=jgi.p|Trimin1|150869|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=483bp|location=Sequence derived from alignment at Contig_261:74834..75316- (Tribonema minus UTEX_B_3156 )
AGGACGTGCCGCAAGGAGGGATGTACGAAACACGCAAGCTATAACCACTT
TGGCGCAGGAAGTCAGTGGTGTTGTGCGCACAAGCAACAAAACATGGTAG
ATGTGGCAAATCCAAAATGCCAGGAGCCTGGATGTGCAAAACGCCCGACA
TTTGGAGAAGAGGGGCAGCGAGCGACACACTGTTTGAAACACAAGCTAGC
AGGTGCAATTGATGTCAGTAACCTTCTGTGTGCCGAACCAGGCTGCATGG
TGCACGCAGCGTTTGGGACAGAGAGAAATCGCCCAACTCATTGCAACAAA
CACAAGCTGCCCCGGGCGGTGAACGTTCTCACAGCCCCATGTGCCCAGCC
AGGCTGCTCGACGCTGCCCAGCTTTGGAGTGAAAGGCCAGCGCCCAACAC
ACTGTGCAACACATAGACCACCGGGCACAGTGAGCGTACATAAATCATGT
GCCCGACCAGGATGCTCACAGCAGCCACGCTTT
back to top