mRNA_16279 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|181510
Unique NamemRNA_16279
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: A0A835Z0W3_9STRA (Histone H4 (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W3_9STRA)

HSP 1 Score: 166 bits (419), Expect = 6.470e-52
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    1 MPPDAD--VLDTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            MPPDAD  VLDTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF
Sbjct:    1 MPPDADADVLDTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 87
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: A0A3B4ZU42_9TELE (Histone H4 n=2 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZU42_9TELE)

HSP 1 Score: 116 bits (291), Expect = 3.070e-32
Identity = 56/80 (70.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:   16 DVLDTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            DVL+ +QG+TK AIRRL RRGGVKRISGL+YEE RGV+ +FL++V+ D V YTE+A+RKTV+A+DVVYALKR+G  LYGF
Sbjct:   18 DVLNYIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 97
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: C5KFG5_PERM5 (Histone H4 n=25 Tax=Eukaryota TaxID=2759 RepID=C5KFG5_PERM5)

HSP 1 Score: 116 bits (291), Expect = 3.450e-32
Identity = 57/77 (74.03%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   25 DTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            D +QG+TK AIRRL RRGGVKRISGL+YEE RGV+ +FL+ V+ DTV YTE+ARRKTV+ALDVVYALKR+G  LYGF
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLESVIKDTVTYTEHARRKTVTALDVVYALKRQGKTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 115 bits (289), Expect = 6.960e-32
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:   25 DTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            D +QG+TK AIRRL RRGGVKRISGL+YEE RGV+ +FL++V+ D+V YTE+ARRKTV+A+DVVYALKR+G  LYGF
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: M7BWI0_CHEMY (Histone H4 n=1 Tax=Chelonia mydas TaxID=8469 RepID=M7BWI0_CHEMY)

HSP 1 Score: 115 bits (289), Expect = 6.960e-32
Identity = 54/77 (70.13%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   25 DTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            D +QG+TK AIRRL RRGGVKR+SGL+YEE RGV+ +FLK+V+HD V YTE+A+RKTV+A D+VYALKR+G  LYGF
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRVSGLIYEETRGVLKVFLKNVIHDAVTYTEHAKRKTVTATDMVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: A0A8C3RS76_CHESE (Histone H4 n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3RS76_CHESE)

HSP 1 Score: 115 bits (289), Expect = 6.960e-32
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   25 DTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            D +QG+TK AIRRL RRGGVKRISGL+YEE RGV+ +FL+DV+ D V YTE+A+RKTV+A+DVVYALKR+G  LYGF
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: A0A0B2F0V8_9BACL (CENP-T_C domain-containing protein n=1 Tax=Paenibacillus sp. IHB B 3415 TaxID=867080 RepID=A0A0B2F0V8_9BACL)

HSP 1 Score: 115 bits (288), Expect = 7.380e-32
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   25 DTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            D +QG+TK AIRRL RRGGVKRISGL+YEE RGV+ +FL++V+ D V YTE+ARRKTV+A+DVVYALKR+G  LYGF
Sbjct:   15 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 91
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: A0A4D9CLB0_9STRA (Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLB0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.840e-32
Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:   25 DTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            D +QG+TK AIRRL RRGGVKRISGL+YEE RGV+ +FL++V+ D+V YTE+ARRKTV+ALDVVYALKR+G  LYGF
Sbjct:   41 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGF 117
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: R7W1L4_AEGTA (Histone H4 n=2 Tax=Eukaryota TaxID=2759 RepID=R7W1L4_AEGTA)

HSP 1 Score: 115 bits (288), Expect = 8.060e-32
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   25 DTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            D +QG+TK AIRRL RRGGVKRISGL+YEE RGV+ +FL++V+ D V YTE+ARRKTV+A+DVVYALKR+G  LYGF
Sbjct:   18 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 94
[Close]
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Match: A0A175YNJ0_DAUCS (Histone H4 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YNJ0_DAUCS)

HSP 1 Score: 115 bits (288), Expect = 9.050e-32
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   25 DTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDVLHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF 255
            D +QG+TK AIRRL RRGGVKRISGL+YEE RGV+ +FL++V+ D V YTE+ARRKTV+A+DVVYALKR+G  LYGF
Sbjct:   22 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 98
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|181510 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0W3_9STRA6.470e-5297.70Histone H4 (Fragment) n=2 Tax=Tribonema minus TaxI... [more]
A0A3B4ZU42_9TELE3.070e-3270.00Histone H4 n=2 Tax=Stegastes partitus TaxID=144197... [more]
C5KFG5_PERM53.450e-3274.03Histone H4 n=25 Tax=Eukaryota TaxID=2759 RepID=C5K... [more]
H4_SOLLC6.960e-3271.43Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
M7BWI0_CHEMY6.960e-3270.13Histone H4 n=1 Tax=Chelonia mydas TaxID=8469 RepID... [more]
A0A8C3RS76_CHESE6.960e-3271.43Histone H4 n=1 Tax=Chelydra serpentina TaxID=8475 ... [more]
A0A0B2F0V8_9BACL7.380e-3271.43CENP-T_C domain-containing protein n=1 Tax=Paeniba... [more]
A0A4D9CLB0_9STRA7.840e-3272.73Histone H4 n=1 Tax=Nannochloropsis salina CCMP1776... [more]
R7W1L4_AEGTA8.060e-3271.43Histone H4 n=2 Tax=Eukaryota TaxID=2759 RepID=R7W1... [more]
A0A175YNJ0_DAUCS9.050e-3271.43Histone H4 n=1 Tax=Daucus carota subsp. sativus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_261contigContig_261:16492..16746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|181510|e_gw1.261.46.1
BRITEko00000,ko00001,ko03036
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11254
DescriptionCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
COG categoryB
Max annot lvl35493|Streptophyta
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota,37ZQ9@33090|Viridiplantae,3GPFG@35493|Streptophyta,3KZS7@4447|Liliopsida,3II7E@38820|Poales
Evalue2.81e-33
Seed ortholog4572.TRIUR3_13063-P1
Hectar predicted targeting categoryother localisation
TranscriptId181832
TrackFilteredModels1
ProteinId181510
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181510gene_16279Tribonema minus UTEX_B_3156 geneContig_261 16492..16746 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16279_1exon_16279_1Tribonema minus UTEX_B_3156 exonContig_261 16492..16746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16279CDS_16279Tribonema minus UTEX_B_3156 CDSContig_261 16492..16746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|181510Trimin1|181510|e_gw1.261.46.1Tribonema minus UTEX_B_3156 polypeptideContig_261 16492..16746 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16279 ID=mRNA_16279|Name=jgi.p|Trimin1|181510|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_261:16492..16746+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCTGATGCCGATGTGCTGGACACGGTTCAAGGCGTAACAAAGTC
CGCCATTCGGCGACTGTGCCGCCGCGGCGGTGTGAAGCGCATCAGTGGCC
TGATGTATGAGGAGGTTCGCGGTGTCGTTACACTTTTTTTGAAGGACGTA
CTGCATGATACGGTTTTATACACTGAGAATGCGCGCCGCAAGACAGTGTC
GGCTCTAGATGTGGTGTATGCCCTAAAGCGACGAGGGCATCATCTATACG
GTTTT
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protein sequence of jgi.p|Trimin1|181510

>Trimin1|181510|e_gw1.261.46.1 ID=Trimin1|181510|e_gw1.261.46.1|Name=jgi.p|Trimin1|181510|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
MPPDADVLDTVQGVTKSAIRRLCRRGGVKRISGLMYEEVRGVVTLFLKDV
LHDTVLYTENARRKTVSALDVVYALKRRGHHLYGF
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mRNA from alignment at Contig_261:16492..16746+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16279 ID=mRNA_16279|Name=jgi.p|Trimin1|181510|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_261:16492..16746+ (Tribonema minus UTEX_B_3156 )
ATGCCACCTGATGCCGATGTGCTGGACACGGTTCAAGGCGTAACAAAGTC
CGCCATTCGGCGACTGTGCCGCCGCGGCGGTGTGAAGCGCATCAGTGGCC
TGATGTATGAGGAGGTTCGCGGTGTCGTTACACTTTTTTTGAAGGACGTA
CTGCATGATACGGTTTTATACACTGAGAATGCGCGCCGCAAGACAGTGTC
GGCTCTAGATGTGGTGTATGCCCTAAAGCGACGAGGGCATCATCTATACG
GTTTT
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Coding sequence (CDS) from alignment at Contig_261:16492..16746+

>mRNA_16279 ID=mRNA_16279|Name=jgi.p|Trimin1|181510|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_261:16492..16746+ (Tribonema minus UTEX_B_3156 )
ATGCCACCTGATGCCGATGTGCTGGACACGGTTCAAGGCGTAACAAAGTC
CGCCATTCGGCGACTGTGCCGCCGCGGCGGTGTGAAGCGCATCAGTGGCC
TGATGTATGAGGAGGTTCGCGGTGTCGTTACACTTTTTTTGAAGGACGTA
CTGCATGATACGGTTTTATACACTGAGAATGCGCGCCGCAAGACAGTGTC
GGCTCTAGATGTGGTGTATGCCCTAAAGCGACGAGGGCATCATCTATACG
GTTTT
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