mRNA_16260 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152723
Unique NamemRNA_16260
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152723 vs. uniprot
Match: A0A836CIE0_9STRA (Phox homologous domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIE0_9STRA)

HSP 1 Score: 405 bits (1040), Expect = 4.640e-143
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 
Query:    1 QQHSQYMVSVIDAVTRGQGLQAHTAYVIDVSALTTGEDWCVNRRFNQFAALHRRLQQHHRSSQTELTVKLPPKEWVGGRHQGVVATRRAALTSYLQDLLSLYNSSERMPPALSAFLELDSSRRGACAYGREFGVDTIIASGMLQVKWWHGPTKPVIGPLDVALGWLNAYVVLAPGPVLTVLRGREHDPRKPVWRFP 588
            QQHSQYMVSVIDAVTRGQGLQAHTAYVIDVSALTTGEDWCVNRRFNQFAALHRRLQQHHRSSQTELTVKLPPKEWVGGRHQGVVATRRAALTSYLQDLLSLYNSSERMPPALSAFLELDSSRRGACAYGREFGVDTIIASGMLQVKWWHGPTKPVIGPLDVALGWLNAYVVLAPGPVLTVLRGREHDPRKPVWRFP
Sbjct:    1 QQHSQYMVSVIDAVTRGQGLQAHTAYVIDVSALTTGEDWCVNRRFNQFAALHRRLQQHHRSSQTELTVKLPPKEWVGGRHQGVVATRRAALTSYLQDLLSLYNSSERMPPALSAFLELDSSRRGACAYGREFGVDTIIASGMLQVKWWHGPTKPVIGPLDVALGWLNAYVVLAPGPVLTVLRGREHDPRKPVWRFP 196
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BLAST of jgi.p|Trimin1|152723 vs. uniprot
Match: A0A2R7VXV2_ONCFA (Uncharacterized protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7VXV2_ONCFA)

HSP 1 Score: 53.5 bits (127), Expect = 5.350e-5
Identity = 31/104 (29.81%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:   28 VIDAVTRGQGLQAHTAYVIDVS-ALTTGEDWCVNRRFNQFAALHRRLQQHHRSSQTELTVKLPPKEWVGGRHQGVVATRRAALTSYLQDLLSLYNSSERMPPAL 336
            ++  + + +    HT Y+I V    +    W + RR+N F ALH  LQ+        L++ LPPK+++G   +  ++ R+AAL  YL+ +L     +E  P  L
Sbjct:   30 LVPNIIKSEFSDGHTEYIIRVQRGYSIEHRWYIQRRYNDFLALHNALQE------ANLSLPLPPKKYIGNLDRRFISERQAALQVYLEKVLKNPFLAESFPVKL 127
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152723 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CIE0_9STRA4.640e-143100.00Phox homologous domain-containing protein (Fragmen... [more]
A0A2R7VXV2_ONCFA5.350e-529.81Uncharacterized protein n=1 Tax=Oncopeltus fasciat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_196contigContig_196:198201..198788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152723|gw1.196.80.1
BRITEko00000,ko04131
KEGG koko:K17923
Descriptioncleavage furrow formation
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2528@1|root,KOG2528@2759|Eukaryota
Evalue3.31e-07
Seed ortholog157072.XP_008876710.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-12_000010.1
TranscriptId153045
TrackFilteredModels1
ProteinId152723
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152723gene_16260Tribonema minus UTEX_B_3156 geneContig_196 198201..198788 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16260_1exon_16260_1Tribonema minus UTEX_B_3156 exonContig_196 198201..198788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16260CDS_16260Tribonema minus UTEX_B_3156 CDSContig_196 198201..198788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152723Trimin1|152723|gw1.196.80.1Tribonema minus UTEX_B_3156 polypeptideContig_196 198201..198788 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16260 ID=mRNA_16260|Name=jgi.p|Trimin1|152723|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_196:198201..198788- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGCACAGTCAGTACATGGTATCCGTCATCGATGCGGTCACCCGGGG
GCAGGGCCTGCAGGCCCACACAGCCTACGTCATAGACGTCTCAGCGCTCA
CGACAGGCGAGGACTGGTGTGTCAACAGGAGGTTCAACCAGTTCGCGGCA
CTCCACAGACGCCTCCAGCAGCACCACCGGAGCTCCCAGACGGAGCTGAC
CGTTAAGCTGCCGCCTAAGGAGTGGGTTGGCGGTCGACACCAGGGCGTCG
TCGCCACCCGCCGCGCAGCGCTCACGTCCTACCTGCAAGACCTGCTCTCG
CTGTACAACAGCAGCGAGCGCATGCCGCCGGCGCTCTCAGCCTTCTTAGA
GCTGGATTCCTCGCGGCGCGGCGCATGCGCGTACGGCCGAGAGTTCGGCG
TCGACACCATCATCGCCAGCGGCATGCTGCAGGTAAAGTGGTGGCACGGC
CCCACGAAGCCGGTCATCGGCCCCCTCGACGTTGCCCTGGGGTGGCTCAA
CGCCTACGTGGTGCTAGCGCCGGGGCCCGTGCTGACGGTGCTGCGTGGGC
GCGAGCACGACCCGCGCAAGCCTGTATGGCGCTTCCCC
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protein sequence of jgi.p|Trimin1|152723

>Trimin1|152723|gw1.196.80.1 ID=Trimin1|152723|gw1.196.80.1|Name=jgi.p|Trimin1|152723|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
QQHSQYMVSVIDAVTRGQGLQAHTAYVIDVSALTTGEDWCVNRRFNQFAA
LHRRLQQHHRSSQTELTVKLPPKEWVGGRHQGVVATRRAALTSYLQDLLS
LYNSSERMPPALSAFLELDSSRRGACAYGREFGVDTIIASGMLQVKWWHG
PTKPVIGPLDVALGWLNAYVVLAPGPVLTVLRGREHDPRKPVWRFP
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mRNA from alignment at Contig_196:198201..198788-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16260 ID=mRNA_16260|Name=jgi.p|Trimin1|152723|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_196:198201..198788- (Tribonema minus UTEX_B_3156 )
CAGCAGCACAGTCAGTACATGGTATCCGTCATCGATGCGGTCACCCGGGG
GCAGGGCCTGCAGGCCCACACAGCCTACGTCATAGACGTCTCAGCGCTCA
CGACAGGCGAGGACTGGTGTGTCAACAGGAGGTTCAACCAGTTCGCGGCA
CTCCACAGACGCCTCCAGCAGCACCACCGGAGCTCCCAGACGGAGCTGAC
CGTTAAGCTGCCGCCTAAGGAGTGGGTTGGCGGTCGACACCAGGGCGTCG
TCGCCACCCGCCGCGCAGCGCTCACGTCCTACCTGCAAGACCTGCTCTCG
CTGTACAACAGCAGCGAGCGCATGCCGCCGGCGCTCTCAGCCTTCTTAGA
GCTGGATTCCTCGCGGCGCGGCGCATGCGCGTACGGCCGAGAGTTCGGCG
TCGACACCATCATCGCCAGCGGCATGCTGCAGGTAAAGTGGTGGCACGGC
CCCACGAAGCCGGTCATCGGCCCCCTCGACGTTGCCCTGGGGTGGCTCAA
CGCCTACGTGGTGCTAGCGCCGGGGCCCGTGCTGACGGTGCTGCGTGGGC
GCGAGCACGACCCGCGCAAGCCTGTATGGCGCTTCCCC
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Coding sequence (CDS) from alignment at Contig_196:198201..198788-

>mRNA_16260 ID=mRNA_16260|Name=jgi.p|Trimin1|152723|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_196:198201..198788- (Tribonema minus UTEX_B_3156 )
CAGCAGCACAGTCAGTACATGGTATCCGTCATCGATGCGGTCACCCGGGG
GCAGGGCCTGCAGGCCCACACAGCCTACGTCATAGACGTCTCAGCGCTCA
CGACAGGCGAGGACTGGTGTGTCAACAGGAGGTTCAACCAGTTCGCGGCA
CTCCACAGACGCCTCCAGCAGCACCACCGGAGCTCCCAGACGGAGCTGAC
CGTTAAGCTGCCGCCTAAGGAGTGGGTTGGCGGTCGACACCAGGGCGTCG
TCGCCACCCGCCGCGCAGCGCTCACGTCCTACCTGCAAGACCTGCTCTCG
CTGTACAACAGCAGCGAGCGCATGCCGCCGGCGCTCTCAGCCTTCTTAGA
GCTGGATTCCTCGCGGCGCGGCGCATGCGCGTACGGCCGAGAGTTCGGCG
TCGACACCATCATCGCCAGCGGCATGCTGCAGGTAAAGTGGTGGCACGGC
CCCACGAAGCCGGTCATCGGCCCCCTCGACGTTGCCCTGGGGTGGCTCAA
CGCCTACGTGGTGCTAGCGCCGGGGCCCGTGCTGACGGTGCTGCGTGGGC
GCGAGCACGACCCGCGCAAGCCTGTATGGCGCTTCCCC
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