mRNA_16233 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A835ZHH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHH5_9STRA) HSP 1 Score: 217 bits (552), Expect = 1.720e-71 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query: 1 DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALICHPSERPLDSFQR 324
DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALICHPSERPLDSFQR
Sbjct: 1 DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALICHPSERPLDSFQR 108
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A835YVU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU8_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.980e-18 Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 1 DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPA 180
D +DL++AGVEASLWIAEQFACDVKN+FPHI IATVSANKLLG G HS+ K Q A
Sbjct: 618 DGFIDLLVAGVEASLWIAEQFACDVKNVFPHIAIATVSANKLLGFGAHSNRKCRRRRQQA 677
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A482T860_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T860_9ARCH) HSP 1 Score: 71.6 bits (174), Expect = 2.770e-12 Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKV 159
+DL++ GVE SLW+AEQFA D++ +FPH+N+AT SANKLLG+G + KV
Sbjct: 468 IDLLIGGVEVSLWLAEQFAADLRRIFPHLNVATASANKLLGMGEDNPSKV 517
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A7S1V2G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V2G1_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.160e-8 Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALI 285
+D++L G E SLW+AEQF CD++ FPH+ I VS+NKLLG V S P H ++ ++ S TFA P A S L+
Sbjct: 187 VDILLTGCETSLWLAEQFGCDLQKAFPHLYIRAVSSNKLLGTFGQEL-VVPSPGNPMSEHHPDLVGSIVIIVSHSGGTFA----PLACSNLL 273
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A7S0D8R1_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D8R1_MICPS) HSP 1 Score: 59.7 bits (143), Expect = 4.350e-8 Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALI 285
+D+V+ G E SLW+AEQFA D+ N FP +++ +VSANK+LG+ V + P G ++ V+ S TFA P ASS L+
Sbjct: 746 VDVVVTGCEVSLWLAEQFAADLANAFPRLDVRSVSANKILGLFGQDLP-VPAIGHPRGKRNDDFTDSIVIVVSHSGGTFA----PLASSNLL 832
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A830HBQ7_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HBQ7_9CHLO) HSP 1 Score: 59.3 bits (142), Expect = 5.960e-8 Identity = 30/92 (32.61%), Postives = 50/92 (54.35%), Query Frame = 1
Query: 10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALI 285
+D+++ GVE SLW+ EQFA D++NLFP + + VSANK++G+ +S + + +R ++ L S TF A + L+
Sbjct: 823 VDVLVTGVEVSLWVGEQFASDLQNLFPCLRVIPVSANKVIGVLSNSKGSFAMTGFSFCSVNIDLKRTIVVALSHSGQTFPTMHATHALAGLL 914
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A5J4XZZ3_9CHLO (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XZZ3_9CHLO) HSP 1 Score: 58.2 bits (139), Expect = 1.490e-7 Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTS---SAQPAGIHTVPRRRLLLPVLGSSASTF 246
+DLV+ GVEASLW AEQFA D+K + P + I +S+NKL+ + HS+ V++ S+ GI ++ ++R + + S TF
Sbjct: 583 VDLVIVGVEASLWTAEQFAQDLKAVLPALQITVISSNKLVAMLEHSASVVSAADLSSGKLGI-SLDKQRTTVVCISHSGQTF 663
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A8J5XLW0_DIALT (Uncharacterized protein n=5 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLW0_DIALT) HSP 1 Score: 57.8 bits (138), Expect = 2.070e-7 Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQ 174
+DL++ G+EASLW+AEQFA D+ + P + + VSANKLLG+ +S++V S +
Sbjct: 710 IDLLIGGIEASLWLAEQFAVDLARICPWLTVRCVSANKLLGVLTATSNRVHFSGE 764
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A7S1EJV7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EJV7_HEMAN) HSP 1 Score: 57.4 bits (137), Expect = 2.710e-7 Identity = 27/80 (33.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 7 RLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTF 246
+D+ + GVEASLW+ EQFA D+++LFP + + +SANK++G+ + + TV +R ++ + S TF
Sbjct: 167 EVDVFVTGVEASLWLGEQFASDLQSLFPSLRVVALSANKVIGVLSNDRGTAPMTGFSFSSLTVSLKRTIVIAVSHSGQTF 246
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: L1K3S3_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3S3_GUITC) HSP 1 Score: 57.4 bits (137), Expect = 2.810e-7 Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 1 DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGI 135
D +D++L G E SLW+AEQFA D+ +FP I++ +S+NKLLG+
Sbjct: 661 DGSIDVLLTGCEVSLWVAEQFASDLAQVFPRISVRVISSNKLLGL 705 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16233 ID=mRNA_16233|Name=jgi.p|Trimin1|177373|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=327bp|location=Sequence derived from alignment at Contig_150:339786..340112+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GACAGCCGGCTCGACCTCGTGCTCGCCGGCGTGGAGGCGTCGCTGTGGATback to top protein sequence of jgi.p|Trimin1|177373 >Trimin1|177373|e_gw1.150.3.1 ID=Trimin1|177373|e_gw1.150.3.1|Name=jgi.p|Trimin1|177373|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=109bp DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSback to top mRNA from alignment at Contig_150:339786..340112+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16233 ID=mRNA_16233|Name=jgi.p|Trimin1|177373|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=327bp|location=Sequence derived from alignment at Contig_150:339786..340112+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_150:339786..340112+ >mRNA_16233 ID=mRNA_16233|Name=jgi.p|Trimin1|177373|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=327bp|location=Sequence derived from alignment at Contig_150:339786..340112+ (Tribonema minus UTEX_B_3156 )back to top |