mRNA_16233 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177373
Unique NamemRNA_16233
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A835ZHH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHH5_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.720e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query:    1 DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALICHPSERPLDSFQR 324
            DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALICHPSERPLDSFQR
Sbjct:    1 DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALICHPSERPLDSFQR 108          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A835YVU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.980e-18
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPA 180
            D  +DL++AGVEASLWIAEQFACDVKN+FPHI IATVSANKLLG G HS+ K     Q A
Sbjct:  618 DGFIDLLVAGVEASLWIAEQFACDVKNVFPHIAIATVSANKLLGFGAHSNRKCRRRRQQA 677          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A482T860_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T860_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 2.770e-12
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKV 159
            +DL++ GVE SLW+AEQFA D++ +FPH+N+AT SANKLLG+G  +  KV
Sbjct:  468 IDLLIGGVEVSLWLAEQFAADLRRIFPHLNVATASANKLLGMGEDNPSKV 517          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A7S1V2G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V2G1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.160e-8
Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALI 285
            +D++L G E SLW+AEQF CD++  FPH+ I  VS+NKLLG        V S   P   H       ++ ++  S  TFA    P A S L+
Sbjct:  187 VDILLTGCETSLWLAEQFGCDLQKAFPHLYIRAVSSNKLLGTFGQEL-VVPSPGNPMSEHHPDLVGSIVIIVSHSGGTFA----PLACSNLL 273          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A7S0D8R1_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D8R1_MICPS)

HSP 1 Score: 59.7 bits (143), Expect = 4.350e-8
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALI 285
            +D+V+ G E SLW+AEQFA D+ N FP +++ +VSANK+LG+       V +   P G         ++ V+  S  TFA    P ASS L+
Sbjct:  746 VDVVVTGCEVSLWLAEQFAADLANAFPRLDVRSVSANKILGLFGQDLP-VPAIGHPRGKRNDDFTDSIVIVVSHSGGTFA----PLASSNLL 832          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A830HBQ7_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HBQ7_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 5.960e-8
Identity = 30/92 (32.61%), Postives = 50/92 (54.35%), Query Frame = 1
Query:   10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALI 285
            +D+++ GVE SLW+ EQFA D++NLFP + +  VSANK++G+  +S      +        +  +R ++  L  S  TF       A + L+
Sbjct:  823 VDVLVTGVEVSLWVGEQFASDLQNLFPCLRVIPVSANKVIGVLSNSKGSFAMTGFSFCSVNIDLKRTIVVALSHSGQTFPTMHATHALAGLL 914          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A5J4XZZ3_9CHLO (Glutamine--fructose-6-phosphate transaminase (isomerizing) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XZZ3_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.490e-7
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTS---SAQPAGIHTVPRRRLLLPVLGSSASTF 246
            +DLV+ GVEASLW AEQFA D+K + P + I  +S+NKL+ +  HS+  V++   S+   GI ++ ++R  +  +  S  TF
Sbjct:  583 VDLVIVGVEASLWTAEQFAQDLKAVLPALQITVISSNKLVAMLEHSASVVSAADLSSGKLGI-SLDKQRTTVVCISHSGQTF 663          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A8J5XLW0_DIALT (Uncharacterized protein n=5 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLW0_DIALT)

HSP 1 Score: 57.8 bits (138), Expect = 2.070e-7
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   10 LDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQ 174
            +DL++ G+EASLW+AEQFA D+  + P + +  VSANKLLG+   +S++V  S +
Sbjct:  710 IDLLIGGIEASLWLAEQFAVDLARICPWLTVRCVSANKLLGVLTATSNRVHFSGE 764          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: A0A7S1EJV7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EJV7_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 2.710e-7
Identity = 27/80 (33.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    7 RLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSSDKVTSSAQPAGIHTVPRRRLLLPVLGSSASTF 246
             +D+ + GVEASLW+ EQFA D+++LFP + +  +SANK++G+  +       +       TV  +R ++  +  S  TF
Sbjct:  167 EVDVFVTGVEASLWLGEQFASDLQSLFPSLRVVALSANKVIGVLSNDRGTAPMTGFSFSSLTVSLKRTIVIAVSHSGQTF 246          
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Match: L1K3S3_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K3S3_GUITC)

HSP 1 Score: 57.4 bits (137), Expect = 2.810e-7
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGI 135
            D  +D++L G E SLW+AEQFA D+  +FP I++  +S+NKLLG+
Sbjct:  661 DGSIDVLLTGCEVSLWVAEQFASDLAQVFPRISVRVISSNKLLGL 705          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177373 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHH5_9STRA1.720e-71100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVU8_9STRA5.980e-1871.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482T860_9ARCH2.770e-1260.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1V2G1_9STRA4.160e-839.13Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S0D8R1_MICPS4.350e-839.13Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A830HBQ7_9CHLO5.960e-832.61Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A5J4XZZ3_9CHLO1.490e-740.24Glutamine--fructose-6-phosphate transaminase (isom... [more]
A0A8J5XLW0_DIALT2.070e-747.27Uncharacterized protein n=5 Tax=Diacronema lutheri... [more]
A0A7S1EJV7_HEMAN2.710e-733.75Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1K3S3_GUITC2.810e-751.11Uncharacterized protein n=2 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_150contigContig_150:339786..340112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177373|e_gw1.150.3.1
Max annot lvl2759|Eukaryota
EggNOG OGs29176@1|root,2R831@2759|Eukaryota
Evalue4.6e-08
Seed ortholog55529.EKX55458
Hectar predicted targeting categoryother localisation
TranscriptId177695
TrackFilteredModels1
ProteinId177373
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177373gene_16233Tribonema minus UTEX_B_3156 geneContig_150 339786..340112 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16233_1exon_16233_1Tribonema minus UTEX_B_3156 exonContig_150 339786..340112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16233CDS_16233Tribonema minus UTEX_B_3156 CDSContig_150 339786..340112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177373Trimin1|177373|e_gw1.150.3.1Tribonema minus UTEX_B_3156 polypeptideContig_150 339786..340112 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16233 ID=mRNA_16233|Name=jgi.p|Trimin1|177373|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=327bp|location=Sequence derived from alignment at Contig_150:339786..340112+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACAGCCGGCTCGACCTCGTGCTCGCCGGCGTGGAGGCGTCGCTGTGGAT
AGCGGAGCAGTTTGCGTGCGACGTGAAGAACCTCTTCCCGCACATCAACA
TCGCCACCGTGAGCGCCAACAAGCTGCTGGGCATCGGGCCGCACTCCAGC
GACAAGGTGACCAGCAGCGCTCAGCCAGCTGGTATACATACTGTACCGAG
AAGACGGCTTTTATTGCCGGTTCTTGGCAGCTCTGCAAGCACGTTCGCAC
GTTCGTGCCTGCCCCAGGCTTCAAGTGCGCTCATTTGCCACCCTTCAGAG
CGGCCCCTGGACTCATTCCAGCGATGA
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protein sequence of jgi.p|Trimin1|177373

>Trimin1|177373|e_gw1.150.3.1 ID=Trimin1|177373|e_gw1.150.3.1|Name=jgi.p|Trimin1|177373|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=109bp
DSRLDLVLAGVEASLWIAEQFACDVKNLFPHINIATVSANKLLGIGPHSS
DKVTSSAQPAGIHTVPRRRLLLPVLGSSASTFARSCLPQASSALICHPSE
RPLDSFQR*
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mRNA from alignment at Contig_150:339786..340112+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16233 ID=mRNA_16233|Name=jgi.p|Trimin1|177373|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=327bp|location=Sequence derived from alignment at Contig_150:339786..340112+ (Tribonema minus UTEX_B_3156 )
GACAGCCGGCTCGACCTCGTGCTCGCCGGCGTGGAGGCGTCGCTGTGGAT AGCGGAGCAGTTTGCGTGCGACGTGAAGAACCTCTTCCCGCACATCAACA TCGCCACCGTGAGCGCCAACAAGCTGCTGGGCATCGGGCCGCACTCCAGC GACAAGGTGACCAGCAGCGCTCAGCCAGCTGGTATACATACTGTACCGAG AAGACGGCTTTTATTGCCGGTTCTTGGCAGCTCTGCAAGCACGTTCGCAC GTTCGTGCCTGCCCCAGGCTTCAAGTGCGCTCATTTGCCACCCTTCAGAG CGGCCCCTGGACTCATTCCAGCGATGA
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Coding sequence (CDS) from alignment at Contig_150:339786..340112+

>mRNA_16233 ID=mRNA_16233|Name=jgi.p|Trimin1|177373|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=327bp|location=Sequence derived from alignment at Contig_150:339786..340112+ (Tribonema minus UTEX_B_3156 )
GACAGCCGGCTCGACCTCGTGCTCGCCGGCGTGGAGGCGTCGCTGTGGAT
AGCGGAGCAGTTTGCGTGCGACGTGAAGAACCTCTTCCCGCACATCAACA
TCGCCACCGTGAGCGCCAACAAGCTGCTGGGCATCGGGCCGCACTCCAGC
GACAAGGTGACCAGCAGCGCTCAGCCAGCTGGTATACATACTGTACCGAG
AAGACGGCTTTTATTGCCGGTTCTTGGCAGCTCTGCAAGCACGTTCGCAC
GTTCGTGCCTGCCCCAGGCTTCAAGTGCGCTCATTTGCCACCCTTCAGAG
CGGCCCCTGGACTCATTCCAGCGATGA
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