mRNA_16232 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|177375
Unique Name	mRNA_16232
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|177375 vs. uniprot
Match: A0A835Z7B2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B2_9STRA)

HSP 1 Score: 367 bits (942), Expect = 4.030e-123
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1

Query:    1 MRYHQQQPQARPITRAQLRAQQSAIVELSALSKNKAPHGGSEGDCDSDCDIVELTAEDVLQHQLYEALELSSRDGEATTSFSRAAAGSRSSRCXXXXXXXXXXXXXXXKRRAGLCEHGRKRYYCKPCSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEFHLNASLHRXXXXXXXXXXXXXXSQRRESVHGNLICEPNRHLHPXXXXXXXXXXXXXYQCRDXXXXXXXXXXXXXXXXXXXXXXSGGGGAGGRXXXXXXXXXXXXXXARRGRVCXXXXXXFYCADCWGGGIXXXXXXXXXXXXXQRRRAGALCKHGNRRRCRRCGSTPVVAM 1056
            MRYHQQQPQARPITRAQLRAQQSAIVELSALSKNKAPHGGSEGDCDSDCDIVELTAEDVLQHQLYEALELSSRDGEATTSFSRAAAGSRSSRCXXXXXXXXXXXXXXXKRRAGLCEHGRKRYYCKPCSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEFHLNASLHRXXXXXXXXXXXXXXSQRRESVHGNLICEPNRHLHPXXXXXXXXXXXXXYQCRDXXXXXXXXXXXXXXXXXXXXXXSGGGGAGGRXXXXXXXXXXXXXXARRGRVCXXXXXXFYCADCWGGGIXXXXXXXXXXXXXQRRRAGALCKHGNRRRCRRCGSTPVVAM
Sbjct:    1 MRYHQQQPQARPITRAQLRAQQSAIVELSALSKNKAPHGGSEGDCDSDCDIVELTAEDVLQHQLYEALELSSRDGEATTSFSRAAAGSRSSRCXXXXXXXXXXXXXXXKRRAGLCEHGRKRYYCKPCSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEFHLNASLHRXXXXXXXXXXXXXXSQRRESVHGNLICEPNRHLHPXXXXXXXXXXXXXYQCRDXXXXXXXXXXXXXXXXXXXXXXSGGGGAGGRXXXXXXXXXXXXXXARRGRVCXXXXXXFYCADCWGGGIXXXXXXXXXXXXXQRRRAGALCKHGNRRRCRRCGSTPVVAM 352

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|177375 vs. uniprot

BLAST of jgi.p|Trimin1|177375 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z7B2_9STRA	4.030e-123	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_150	contig	Contig_150:320333..323649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|177375\|e_gw1.150.48.1
Hectar predicted targeting category	other localisation
TranscriptId	177697
Track	FilteredModels1
ProteinId	177375

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177375	gene_16232	Tribonema minus UTEX_B_3156	gene	Contig_150 320333..323649 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177375	Trimin1\|177375\|e_gw1.150.48.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_150 320333..323649 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16232_1	exon_16232_1	Tribonema minus UTEX_B_3156	exon	Contig_150 320333..320814 +
exon_16232_2	exon_16232_2	Tribonema minus UTEX_B_3156	exon	Contig_150 321784..321844 +
exon_16232_3	exon_16232_3	Tribonema minus UTEX_B_3156	exon	Contig_150 321985..322113 +
exon_16232_4	exon_16232_4	Tribonema minus UTEX_B_3156	exon	Contig_150 322187..322365 +
exon_16232_5	exon_16232_5	Tribonema minus UTEX_B_3156	exon	Contig_150 323442..323649 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16232	CDS_16232	Tribonema minus UTEX_B_3156	CDS	Contig_150 320333..320814 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_150:320333..323649+
coding sequence from alignment at Contig_150:320333..323649+

spliced messenger RNA

>mRNA_16232 ID=mRNA_16232|Name=jgi.p|Trimin1|177375|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1059bp|location=Sequence derived from alignment at Contig_150:320333..323649+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATATCATCAGCAGCAACCACAGGCTCGCCCTATAACCCGAGCTCA
ACTCAGAGCTCAGCAGTCCGCAATTGTGGAGCTCTCTGCGCTGTCGAAGA
ACAAGGCACCGCATGGGGGATCCGAGGGCGATTGCGACTCGGACTGCGAC
ATCGTAGAGCTCACCGCGGAGGACGTACTGCAGCACCAACTGTACGAGGC
TTTAGAGCTGAGCAGCAGAGATGGCGAAGCCACCACCAGCTTCAGCAGGG
CTGCTGCTGGCAGCCGCAGCAGCAGATGCAGCAGTGGCAGCAGCAGCGCC
ACTGGCGGCGGCGGCGGCGGCGCGAAGCGCCGCGCCGGCCTGTGCGAGCA
CGGCCGCAAGCGCTACTACTGCAAGCCGTGCAGCGGCGCCGGCATCTGCG
CGCACGGCCGGCGGCGCGCGGCGTGCAAGCAGTGCGGCGGCACGAGCGTG
TGCGTCCACGCGCGCGACCGGTACCACTGCAGGGAGTGCGGCGGCGCGCA
GTTCTGCCACCACGGGCGCTGGCGCTACCAGTGCTGCGAATTTCACCTTA
ACGCCTCTCTCCACAGGGAGTGCGGCGGCGCGCAGTTCTGCCACCACGGA
CGCTGGCGCTCTCAGCGCCGCGAATCCGTGCATGGGAATCTGATCTGCGA
ACCAAATCGACACCTCCACCCGTGCGGCGGCGCGCAGTTCTGCCACCACG
GACGCTGGCGCTACCAGTGCCGCGACTGCGGCGGCGGGCGCTTCTGCGTG
CACGGCGCGCGCAAGGGCTTGTGCCGCGAGTGCGGCGGTGGCAGCGGCGG
CGGCGGCGCCGGCGGGCGGTGCCGCCACGGCGCCGAGCGCTGCAGCTGCC
GCGAGTGCGGCGCGCGCCGCGGCAGGGTCTGCGAGCACGGGCGCCAGCGC
TTCTACTGCGCCGACTGCTGGGGCGGCGGCATCTGCGAGCACCGCCGCCG
CCGCAGCGCGTGCGCCACGTGCCAGCGGCGCCGCGCCGGCGCGCTGTGCA
AGCACGGCAACCGCCGCCGCTGCCGCCGCTGCGGCAGCACGCCCGTCGTG
GCAATGTAG

protein sequence of jgi.p|Trimin1|177375

>Trimin1|177375|e_gw1.150.48.1 ID=Trimin1|177375|e_gw1.150.48.1|Name=jgi.p|Trimin1|177375|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=353bp
MRYHQQQPQARPITRAQLRAQQSAIVELSALSKNKAPHGGSEGDCDSDCD
IVELTAEDVLQHQLYEALELSSRDGEATTSFSRAAAGSRSSRCSSGSSSA
TGGGGGGAKRRAGLCEHGRKRYYCKPCSGAGICAHGRRRAACKQCGGTSV
CVHARDRYHCRECGGAQFCHHGRWRYQCCEFHLNASLHRECGGAQFCHHG
RWRSQRRESVHGNLICEPNRHLHPCGGAQFCHHGRWRYQCRDCGGGRFCV
HGARKGLCRECGGGSGGGGAGGRCRHGAERCSCRECGARRGRVCEHGRQR
FYCADCWGGGICEHRRRRSACATCQRRRAGALCKHGNRRRCRRCGSTPVV
AM*

mRNA from alignment at Contig_150:320333..323649+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16232 ID=mRNA_16232|Name=jgi.p|Trimin1|177375|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3317bp|location=Sequence derived from alignment at Contig_150:320333..323649+ (Tribonema minus UTEX_B_3156 )
ATGCGATATCATCAGCAGCAACCACAGGCTCGCCCTATAACCCGAGCTCA
ACTCAGAGCTCAGCAGTCCGCAATTGTGGAGCTCTCTGCGCTGTCGAAGA
ACAAGGCACCGCATGGGGGATCCGAGGGCGATTGCGACTCGGACTGCGAC
ATCGTAGAGCTCACCGCGGAGGACGTACTGCAGCACCAACTGTACGAGGC
TTTAGAGCTGAGCAGCAGAGATGGCGAAGCCACCACCAGCTTCAGCAGGG
CTGCTGCTGGCAGCCGCAGCAGCAGATGCAGCAGTGGCAGCAGCAGCGCC
ACTGGCGGCGGCGGCGGCGGCGCGAAGCGCCGCGCCGGCCTGTGCGAGCA
CGGCCGCAAGCGCTACTACTGCAAGCCGTGCAGCGGCGCCGGCATCTGCG
CGCACGGCCGGCGGCGCGCGGCGTGCAAGCAGTGCGGCGGCACGAGCGTG
TGCGTCCACGCGCGCGACCGGTACCACTGCAGGTGCGCCAGCGCTCCGCA
CGGCTGTCGCTTATCAATGAGATTGTCATGTACTTGTAAAGAGTGATTGC
CGTGATTTGAGAGTGGGATTTGCGGTCGTTCTTCGCGGATGCGTATAGCC
TGCAAGTGTGCAGACGTGCCGGAGTCGCTGTGAGCTCGCACAAAATTCCC
TCTGGGGGTACACGTGCGACACGTAGTGTGTACCGGAGACCCCGCGTTGC
ACTGGCCTCCCCAAAACCATATGTGCGTGCGCATGGCGCGCTGCTGTGCT
GTGCCAGCAGATTGCCGTAGATGCTCATGTTCGTTGTTCTGCAAGCGGCC
CCTGCATCTACGCATGGATCATGGACGCTTTTGCACTGTCATCTGCTGTC
TGTCGCGAGCACAATCCAAAGTGCGCTATATAGTCGTGCGTGTCCGCCAG
CTTTTGCCCGGCGGCTCGCCTCATCTCTCACCTGGAGAGTACGGGGATGG
CGGCGGCGGCGGCGCACATGTCTGCCGCCACAGACGCAGGTCAGTGGCAG
CGCCGCGCACGCCTGAACCAAGTCACCACATCAGCTTGACTGCGCACTTC
GGGTTGGGGTTAGAGTTAGCTAACCCTGACCCTTGTGCGCGGTTTACCTC
TGACCCTCGCACACGCTGAGTCGATGCTCCACAGGGCGCGCGGTGGTGCT
CAGCTCCGCTACCACAAACGCTGGCGTTGCCAGTGCCGCGCACACAAACG
CCAGCTGCAGCCCTCACTCCGATAATTGGCTTTGCCGCTTTTGCTTTGCT
GCACACGAGACGGTCTTCAACTCCAACCCTCTCACCGCTCTTGAAGTGTC
CCAGAGAGCGCAACCGCAGCTGCTGGCACTTGCAGTGCCGCGACTTCATA
CATGGAAAACTGCACACCAAATCGGCACCTCCAACCGGTCGCGCTCGCCT
GCACTTCAACTGTGACTCTCACACTCGTACCCCGGACGCCTCCCTCCACA
GGGAGTGCGGCGGCGCGCAGTTCTGCCACCACGGGCGCTGGCGCTACCAG
TGCTGCGAATTTGTATACTTCCAAGTATGGATCTGACCTTCAAACCAGAT
CGGCGCCCTCGCTCGTTTGCACTCGCATGCACTTCAACTGCGCTTCTAGC
ACCTCCACCTGGTTGCCCTCGCATAAACTCCAACTGCAACTCTCACATTT
AGCACCTTAACGCCTCTCTCCACAGGGAGTGCGGCGGCGCGCAGTTCTGC
CACCACGGACGCTGGCGCTCTCAGCGCCGCGAATCCGTGCATGGGAATCT
GATCTGCGAACCAAATCGACACCTCCACCCGGTCGCATGCACTTCAACTG
CGCACTTCAACTGTGACTCTCACACTATTACCCAAAACGCCTCTCCCCAG
AGAGTGCGGCGGCGCGCAGTTCTGCCACCACGGACGCTGGCGCTACCAGT
GCCGCGACTGCGGCGGCGGGCGCTTCTGCGTGCACGGCGCGCGCAAGGGC
TTGTGCCGCGAGTGCGGCGGTGGCAGCGGCGGCGGCGGCGCCGGCGGGCG
GTGCCGCCACGGCGCCGAGCGCTGCAGCTGCCGGTAAGTCACATATTCAG
TTTGCAAATTGAAGCGCGTGTTCAATGCGATTTGAGGAGTTCATGCACTG
CCATGTGTGCCGAAGCATGTGCTGTGGCACGGACGGTCGCTGCCTTGGGC
CGTCCAGTGGTGGCAACAAAAAGCTGATGGTGCGCTTCACGAGCTCTCTG
AGGCATGCGTGTGCTCTTTTTCATCGTGCACAAGGTTTCCTGCTGTGCTT
GACCGAGCGGCACCAGGCCCTCGCAGTCTTTACCGAGTGGCCACGGGCTG
TGGCAATTCCTAACAGCCAGCTTCAAGAGCCTTCAGCAAGTGCCTGCACG
CAACAACGGCTGACAACTGCCGCTGCCTGCGGTATCTGCAGTTGAGGTGC
GTGCGGTCTGAGCCGCCTGCGGCACGTGCACTGTCGCAGTGACTTCTGGC
CTCAACGAATCGACGCGACCACCGGTGATATCACCGCTCACGTCCGGCGA
CGCTCGCCGATCGCTGCCGCAGCCTTGCTCCATAGCAACGTGCCCCCCCC
CCCCCTGTCATTGGTCAGCAAAGCCGGTGGCTGCGCTCGCACATTGCCAA
CAGCGCCACCTGCGCGTCTGGAGAGTAGGTTGCCACGCAGTGGCTGCCGC
TACGCGACGGTGTCTGTTACTGCGCCCAAGCTGCACACGCGGCCAGCGCA
GCGTTTGCGCGGACGGCGGCGCTTGCGACTGCACCGACCAATGCCCGATG
CTGTTCCCGCACCGCGCGCCGTTTCTGTCGAGTGCACGCACTGCCGAATG
CGTGCTGGACATCTCAACCATCAAGTCGCACCTCGCAGTGGCCCCTGTCA
TCGTGCATGCGCGCAGACCGCGGCTCGAGCTGATGCAGCGCCCGCCAGCG
CCGGCGGCCGGCGCTTCCAGCGCACCGGCTGCAGTGCCATACGCTGTCCT
ATGCCACTCGGCACATCTCACCCACGAGCCGTGTCTCTCGCAGCATCAGT
GCCAGCCCAACGCCATGCCGATGAATGCACCTCAACCCCCCCCTTCCCCC
CCTCCCCCCCTCCCCCCGCCCCCCCCCCCGCGCCGCCGCGCGCGCGCTGC
GCACCGCAGCGAGTGCGGCGCGCGCCGCGGCAGGGTCTGCGAGCACGGGC
GCCAGCGCTTCTACTGCGCCGACTGCTGGGGCGGCGGCATCTGCGAGCAC
CGCCGCCGCCGCAGCGCGTGCGCCACGTGCCAGCGGCGCCGCGCCGGCGC
GCTGTGCAAGCACGGCAACCGCCGCCGCTGCCGCCGCTGCGGCAGCACGC
CCGTCGTGGCAATGTAG

Coding sequence (CDS) from alignment at Contig_150:320333..323649+

>mRNA_16232 ID=mRNA_16232|Name=jgi.p|Trimin1|177375|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1059bp|location=Sequence derived from alignment at Contig_150:320333..323649+ (Tribonema minus UTEX_B_3156 )
ATGCGATATCATCAGCAGCAACCACAGGCTCGCCCTATAACCCGAGCTCA
ACTCAGAGCTCAGCAGTCCGCAATTGTGGAGCTCTCTGCGCTGTCGAAGA
ACAAGGCACCGCATGGGGGATCCGAGGGCGATTGCGACTCGGACTGCGAC
ATCGTAGAGCTCACCGCGGAGGACGTACTGCAGCACCAACTGTACGAGGC
TTTAGAGCTGAGCAGCAGAGATGGCGAAGCCACCACCAGCTTCAGCAGGG
CTGCTGCTGGCAGCCGCAGCAGCAGATGCAGCAGTGGCAGCAGCAGCGCC
ACTGGCGGCGGCGGCGGCGGCGCGAAGCGCCGCGCCGGCCTGTGCGAGCA
CGGCCGCAAGCGCTACTACTGCAAGCCGTGCAGCGGCGCCGGCATCTGCG
CGCACGGCCGGCGGCGCGCGGCGTGCAAGCAGTGCGGCGGCACGAGCGTG
TGCGTCCACGCGCGCGACCGGTACCACTGCAGGGAGTGCGGCGGCGCGCA
GTTCTGCCACCACGGGCGCTGGCGCTACCAGTGCTGCGAATTTCACCTTA
ACGCCTCTCTCCACAGGGAGTGCGGCGGCGCGCAGTTCTGCCACCACGGA
CGCTGGCGCTCTCAGCGCCGCGAATCCGTGCATGGGAATCTGATCTGCGA
ACCAAATCGACACCTCCACCCGTGCGGCGGCGCGCAGTTCTGCCACCACG
GACGCTGGCGCTACCAGTGCCGCGACTGCGGCGGCGGGCGCTTCTGCGTG
CACGGCGCGCGCAAGGGCTTGTGCCGCGAGTGCGGCGGTGGCAGCGGCGG
CGGCGGCGCCGGCGGGCGGTGCCGCCACGGCGCCGAGCGCTGCAGCTGCC
GCGAGTGCGGCGCGCGCCGCGGCAGGGTCTGCGAGCACGGGCGCCAGCGC
TTCTACTGCGCCGACTGCTGGGGCGGCGGCATCTGCGAGCACCGCCGCCG
CCGCAGCGCGTGCGCCACGTGCCAGCGGCGCCGCGCCGGCGCGCTGTGCA
AGCACGGCAACCGCCGCCGCTGCCGCCGCTGCGGCAGCACGCCCGTCGTG
GCAATGTAG