mRNA_16217 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|177349
Unique Name	mRNA_16217
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: A0A835ZHG5_9STRA (Tubulin-tyrosine ligase/Tubulin polyglutamylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHG5_9STRA)

HSP 1 Score: 538 bits (1387), Expect = 2.260e-193
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1

Query:    1 PRSRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAATNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQATRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALIRVCSARRVVACSRRERPS 819
            PRSRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAATNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQATRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALIRVCSARRVVACSRRERPS
Sbjct:    1 PRSRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAATNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQATRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALIRVCSARRVVACSRRERPS 273

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: D7FTB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB8_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 5.650e-97
Identity = 162/262 (61.83%), Postives = 197/262 (75.19%), Query Frame = 1

Query:    1 PRSRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAA--------TNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQ------ATRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDR 744
            P SRELTRKDLL KH++R MA   R A+EFHIMPQTFVLPHE+T FV+A         N+WIMKPVG+SRGRGI +IDD+  + Y+D VV+QRY+G PLLL GYKFDLRLYVLVTSFN LEAF+Y+EGFAR+ST  Y+  A  + +RF+HLTNSSIQ      A RDSPL   +  E GGTK +L+YLW RL  + V V  LW++I ++VVK+LV  E  +P QPN+FELFG+DVL+D  LRPWL+EVNASP M RD  +DR
Sbjct:  763 PNSRELTRKDLLNKHVSRFMAPGGRLAKEFHIMPQTFVLPHEFTLFVSAFTSSSGTRENLWIMKPVGMSRGRGIRLIDDIKDICYADKVVLQRYIGNPLLLDGYKFDLRLYVLVTSFNKLEAFIYKEGFARLSTHRYEKGA--IDNRFIHLTNSSIQRLNEAGAARDSPLNQAKTSEAGGTKTTLSYLWRRLAASGVDVGALWAEICSVVVKSLVCVESSIPNQPNSFELFGYDVLIDDRLRPWLIEVNASPSMARDTHVDR 1022

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: A0A6H5L5P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P9_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.100e-83
Identity = 149/261 (57.09%), Postives = 184/261 (70.50%), Query Frame = 1

Query:   25 KDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAA--------TNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQ------ATRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALI 765
            K+LL KH++R MA   R A+EFHIMPQTFVLPHE+T FV+A         N+WIMKPVG+SRGRGI +IDD+  + Y+D VV+QRY+G PLLL GYKFDLRLYVLVTSFN LEAF+Y+EGFAR+ST  Y+     + +RF+HLTNSSIQ      A RDSPL   +  E GGTK +L+YLW RL  + + V  LW++I ++VVK+LV  E  +P QPN              LRPWL+EVNASP M RD  +DR+VKEALI
Sbjct: 1017 KNLLNKHMSRFMAPGGRLAKEFHIMPQTFVLPHEFTLFVSAFTSSSGKRENLWIMKPVGMSRGRGIRLIDDIKDICYADKVVLQRYIGNPLLLDGYKFDLRLYVLVTSFNKLEAFIYKEGFARLSTHRYE--KGDIDNRFIHLTNSSIQRLNEAGAARDSPLNQAKTSEAGGTKTTLSYLWRRLAASGLDVGALWAEICSVVVKSLVCVESSIPNQPNR----------QVKLRPWLIEVNASPSMARDTHVDRQVKEALI 1265

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: F0YDV0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDV0_AURAN)

HSP 1 Score: 260 bits (665), Expect = 2.940e-83
Identity = 145/279 (51.97%), Postives = 178/279 (63.80%), Query Frame = 1

Query:    1 PRSRELTRKDLLKKHLTR-----AMAASARHAREFHIMPQTFVLPHEYTAFVAA---------TNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQATRDS-------PLLDGELHETGGTKASLTYLWARLRRARVPVD--RLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALIR 768
            P ++ LTRKD L + + R     A     +HA  F + P+T++LP EY+A VAA            WIMKPVGLSRGRGI V+  +  V Y+D VVVQ Y+ RP LLGG+KFDLRLYVLVTSF PLEAFLYREGFARV+T+ +    +   D+FVHLTN+SIQ            PL      E GGTK SL +LW RLRR     D  R+W  +  LV+K+LV  E  +P QPN+FELFG+DVL+DA  R WL+EVNASP M R+ +LD  VKE  IR
Sbjct:    7 PHAKHLTRKDFLARSIGRCRHLAATGGGGKHAGFFDLCPETYLLPAEYSALVAAHVDKQKRGAKPTWIMKPVGLSRGRGISVVSSIEDVTYADPVVVQAYLDRPRLLGGHKFDLRLYVLVTSFAPLEAFLYREGFARVATKPFSAPGDDNGDKFVHLTNASIQKHGGQEKGELYGPLAGAGPDEAGGTKCSLDFLWRRLRREDPTFDEARVWDGVRELVLKSLVCVEDSIPHQPNSFELFGYDVLIDADSRCWLIEVNASPSMARETSLDADVKERCIR 285

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: A0A7R9YEJ0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEJ0_9STRA)

HSP 1 Score: 270 bits (691), Expect = 6.210e-82
Identity = 149/288 (51.74%), Postives = 191/288 (66.32%), Query Frame = 1

Query:    1 PRSRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAA------------------------TNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQATRD-------SPLLDGELH-ETGGTKASLTYLWARLRRAR-VPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALI 765
            P SR LTRKD +K++L R +  S R A+ + IMP+T+VLP E+  F+ A                         N+WIMKPV  SRGRGI+++ D+  V YS++ V+Q+Y+  P LL G+KFDLR+YVLVTSFNPLEAF+YREGFAR+STR Y   AE + D+FVHLTNSSIQ T         +PL   +L  E GGTK SL+YL   L+  R +   RLW  I  LV+K+LVACE  +P  P+AFELFG+DVL+D+ LRPWLLEVN+SP +DR  ALD R+K AL+
Sbjct:  378 PGSRALTRKDFVKRNLHRFVRLSQRFAKFWTIMPETYVLPSEFKQFIPAFTSSEKSARAAQEARQKDATVSLQPNLWIMKPVCSSRGRGIKLVKDICQVLYSETTVIQKYIRDPFLLDGFKFDLRIYVLVTSFNPLEAFIYREGFARLSTRLYTTDAESMTDKFVHLTNSSIQRTNGPAGTDFGNPLDKADLCCEAGGTKLSLSYLSRYLQNVRGIDFHRLWQKICVLVLKSLVACEGEIPFCPSAFELFGYDVLLDSKLRPWLLEVNSSPSLDRGSALDDRIKIALV 665

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: W4FVY9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVY9_9STRA)

HSP 1 Score: 273 bits (699), Expect = 1.560e-80
Identity = 137/270 (50.74%), Postives = 184/270 (68.15%), Query Frame = 1

Query:    7 SRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAA-----------TNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQA------TRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALI 765
            ++ LTRKD+LKK L R  A   +    F I P+TF+LP+EY  FV A            N WIMKPV LSRGRGI +++D+  V Y  +V++Q+Y+  PLLL G+KFDLRLYVLVTSFNPLEAF Y EGF R+ T  Y+  +E + D F+HLTNSSIQ         D+P+ + E  E GGTKASL YLW+RL  A  PVD + + I  +++K+LVA E  +P Q N+F+L+G+D+L+D + RPWL+E+N+SP M RD++LD  +K+ALI
Sbjct:  906 AKALTRKDMLKKSLQRYAAMGDKMKASFDIAPETFILPNEYIPFVQAFKRRADAIGSSKNFWIMKPVALSRGRGISLLNDLGQVTYGQAVILQKYIENPLLLDGFKFDLRLYVLVTSFNPLEAFFYNEGFVRICTHRYNTDSEDMNDLFMHLTNSSIQKHGHMDQVSDNPVNNAEATEAGGTKASLAYLWSRLAAAHAPVDTIKAAILDVIIKSLVAGEDSIPFQVNSFDLYGYDILLDESFRPWLIEINSSPSMGRDNSLDYVIKDALI 1175

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: T0RLZ6_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RLZ6_SAPDV)

HSP 1 Score: 270 bits (689), Expect = 3.200e-79
Identity = 134/270 (49.63%), Postives = 183/270 (67.78%), Query Frame = 1

Query:    7 SRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAA-----------TNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQA------TRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALI 765
            ++ LTRKD+LKK L R  +      + F I P+TF+LP++Y  FV A            N+WIMKPV LSRGRGI +++D+  V Y ++VVVQ+Y+  PLLL G+KFDLRLYVLVTSFNPLEAF Y+EGF R+ T  Y   A  + D F+HLTNSSIQ         D+P+ +    E GGTKASL YLW+RL     PV+++  DI  +++K+LVA E  +P Q N+F++FG+D+L+D A RPWL+E+N+SP M R++ LD  +K+AL+
Sbjct:  870 AKALTRKDMLKKSLHRYTSLGGERLKSFDIAPETFILPNDYIPFVQAFKKRGDAIGQAKNVWIMKPVALSRGRGISLLNDLGQVAYGEAVVVQKYIENPLLLDGFKFDLRLYVLVTSFNPLEAFFYQEGFVRICTHRYSTDATDINDLFMHLTNSSIQKYGDMDQVTDNPVNNASTTEAGGTKASLAYLWSRLAAVHAPVEKIKEDIIHVILKSLVAGEDAIPYQVNSFDVFGYDILLDEAYRPWLIEINSSPSMARENNLDYVIKDALM 1139

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: A0A067C1V7_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C1V7_SAPPC)

HSP 1 Score: 268 bits (686), Expect = 5.030e-79
Identity = 134/270 (49.63%), Postives = 183/270 (67.78%), Query Frame = 1

Query:    7 SRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAA-----------TNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQA------TRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALI 765
            ++ LTRKD+LKK L R  +      + F I P+TF+LP++Y  FV A            N+WIMKPV LSRGRGI +++D+  V Y ++VVVQ+Y+  PLLL G+KFDLRLYVLVTSFNPLEAF Y+EGF R+ T  Y   A  + D F+HLTNSSIQ         D+P+ +    E GGTKASL YLW+RL     PV+++  DI  +++K+LVA E  +P Q N+F++FG+D+L+D A RPWL+E+N+SP M R++ LD  +K+AL+
Sbjct:  786 AKALTRKDMLKKSLHRYTSLGGERLKSFDIAPETFILPNDYIPFVQAFKKRGDAIGPTKNVWIMKPVALSRGRGISLLNDLGQVAYGEAVVVQKYIENPLLLDGFKFDLRLYVLVTSFNPLEAFFYQEGFVRICTHRYSSDATDINDLFMHLTNSSIQKYGDMDQVADNPVNNASTTEAGGTKASLAYLWSRLAAVHAPVEQIKEDIIHVILKSLVAGEDAIPYQVNSFDVFGYDILLDEAYRPWLIEINSSPSMARENNLDYVIKDALM 1055

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: A0A024TG46_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TG46_9STRA)

HSP 1 Score: 266 bits (680), Expect = 4.470e-78
Identity = 137/270 (50.74%), Postives = 179/270 (66.30%), Query Frame = 1

Query:    7 SRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFV-----------AATNIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQA------TRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALI 765
            ++ LTRKD LKK L R  A   +    F I P+TF+LPH+Y  FV           A  N WIMKPV LSRGRGI +++D+  V Y D+VVVQ+Y+  PLLL G+KFDLRLYVLVTSFNPLEAF Y EGF R+ T  Y   +  L + F+HLTNSSIQ         D+P+   +  E GGTKASL YLW+RL  A  PVD + + I  ++VK+LVA E  +P Q N+F+L+G+D+L+D   RPWL+E+N+SP M R++ LD  +K+AL+
Sbjct:  823 AKALTRKDQLKKSLQRFTAMGDKMKAAFDIAPETFILPHDYIPFVQAFKRRADAVGATHNFWIMKPVALSRGRGISLLNDLGQVAYGDAVVVQKYIENPLLLDGFKFDLRLYVLVTSFNPLEAFFYNEGFVRICTHRYSTDSADLGNLFMHLTNSSIQKHGHMDQVADNPVHQADATEAGGTKASLAYLWSRLAAANAPVDAIKAAIVDVIVKSLVAGEDSIPYQVNSFDLYGYDILLDDQYRPWLIEINSSPSMARENHLDYVIKDALL 1092

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BLAST of jgi.p|Trimin1|177349 vs. uniprot
Match: A0A7S3RFB0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RFB0_EMIHU)

HSP 1 Score: 253 bits (646), Expect = 2.580e-76
Identity = 142/282 (50.35%), Postives = 183/282 (64.89%), Query Frame = 1

Query:    1 PRSRELTRKDLLKKHLTRAMA-ASARHAR---------EFHIMPQTFVLPHEYTAFVAA-------------TNIWIMKPVG--LSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDLRLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQATRDSPLLDGEL--HETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKALVACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRVKEALI 765
            P SR+LTRKDLLK+HL RA+   SAR  +         E  +MP TF LP EY AF                 NIWIMKP G   SRGR I ++DD+S V Y +S+V+QRY+ RPLLL G+KFDLRLYVLVTSFNPLE F+Y +GF R ++  Y      L + +VHLTNSSIQ  R +     E    E GG+K  L+Y+  +LRR  V  + +W  I ALV+++L+A +  +P Q N+FELFG+DVL+D  L+PWL+EVNASP + RD+ALDR VK+AL+
Sbjct:  273 PHSRQLTRKDLLKRHLQRALLPGSARGCQTLGTTCASTEGEVMPLTFALPAEYNAFAMVFAEARSSAKATGEPNIWIMKPTGGGASRGRRITLLDDISGVCYGESIVLQRYIHRPLLLDGFKFDLRLYVLVTSFNPLECFIYGDGFGRFASERYTSDPARLDNLYVHLTNSSIQKERPTAAERNEHLDSEEGGSKCRLSYVAEQLRRLGVDWEVMWEKIKALVLRSLLAVQDAIPHQRNSFELFGYDVLIDEGLKPWLIEVNASPSLARDNALDREVKDALL 554

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|177349 vs. uniprot

BLAST of jgi.p|Trimin1|177349 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZHG5_9STRA	2.260e-193	100.00	Tubulin-tyrosine ligase/Tubulin polyglutamylase n=...	[more]
D7FTB8_ECTSI	5.650e-97	61.83	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L5P9_9PHAE	1.100e-83	57.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
F0YDV0_AURAN	2.940e-83	51.97	Uncharacterized protein (Fragment) n=1 Tax=Aureoco...	[more]
A0A7R9YEJ0_9STRA	6.210e-82	51.74	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
W4FVY9_9STRA	1.560e-80	50.74	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
T0RLZ6_SAPDV	3.200e-79	49.63	Uncharacterized protein n=1 Tax=Saprolegnia diclin...	[more]
A0A067C1V7_SAPPC	5.030e-79	49.63	Uncharacterized protein n=1 Tax=Saprolegnia parasi...	[more]
A0A024TG46_9STRA	4.470e-78	50.74	Uncharacterized protein n=2 Tax=Aphanomyces invada...	[more]
A0A7S3RFB0_EMIHU	2.580e-76	50.35	Hypothetical protein n=1 Tax=Emiliania huxleyi Tax...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_150	contig	Contig_150:186226..191283 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|177349\|e_gw1.150.59.1
BRITE	ko00000,ko01000,ko04812
KEGG ko	ko:K16600,ko:K16602
Description	protein polyglycylation
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG2157@1\|root,KOG2157@2759\|Eukaryota
Evalue	9.27e-98
Seed ortholog	2880.D7FTB8
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Tubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 ortholog	Ec-05_000280.1
TranscriptId	177671
Track	FilteredModels1
ProteinId	177349

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177349	gene_16217	Tribonema minus UTEX_B_3156	gene	Contig_150 186226..191283 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177349	Trimin1\|177349\|e_gw1.150.59.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_150 186226..191283 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_16217_1	exon_16217_1	Tribonema minus UTEX_B_3156	exon	Contig_150 186226..186371 +
exon_16217_2	exon_16217_2	Tribonema minus UTEX_B_3156	exon	Contig_150 186912..186983 +
exon_16217_3	exon_16217_3	Tribonema minus UTEX_B_3156	exon	Contig_150 188875..189107 +
exon_16217_4	exon_16217_4	Tribonema minus UTEX_B_3156	exon	Contig_150 190087..190139 +
exon_16217_5	exon_16217_5	Tribonema minus UTEX_B_3156	exon	Contig_150 190966..191283 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_16217	CDS_16217	Tribonema minus UTEX_B_3156	CDS	Contig_150 186226..186371 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_150:186226..191283+
coding sequence from alignment at Contig_150:186226..191283+

spliced messenger RNA

>mRNA_16217 ID=mRNA_16217|Name=jgi.p|Trimin1|177349|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_150:186226..191283+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGCGCAGCCGCGAGCTCACGCGCAAGGACCTGCTCAAGAAGCACCTGAC
GCGCGCGATGGCGGCAAGCGCGCGGCACGCGCGCGAGTTTCACATCATGC
CCCAGACGTTCGTGCTGCCGCACGAGTACACGGCGTTCGTCGCGGCGACC
AACATTTGGATCATGAAGCCCGTCGGGCTGAGTCGCGGGCGCGGAATTGA
AGTTATCGACGATGTCAGCGCCGTGCGCTACAGCGACAGCGTCGTCGTGC
AGCGCTACGTCGGGCGCCCGCTGCTGCTGGGCGGCTACAAGTTCGACCTG
CGCCTGTACGTCCTCGTGACGTCCTTCAACCCGCTGGAGGCGTTCCTGTA
TCGCGAAGGCTTCGCGCGCGTGAGCACGCGCGCGTACGACGTAACTGCCG
AGGGCCTGCGCGACCGCTTCGTGCACCTCACCAACAGCAGCATACAGGCA
ACGCGTGACTCTCCCCTGCTCGACGGCGAGCTGCACGAGACGGGCGGCAC
CAAGGCATCGCTCACCTACCTGTGGGCGCGGCTGCGACGCGCGCGCGTGC
CGGTGGATCGCCTGTGGTCCGACATCACCGCGCTCGTCGTCAAGGCGCTC
GTGGCGTGCGAGCCGGGCGTCCCTGCGCAGCCCAACGCGTTCGAGCTGTT
TGGCTTCGACGTGCTGGTGGATGCCGCGCTGCGGCCGTGGCTGCTGGAGG
TCAACGCGTCGCCGCAGATGGACCGGGACCACGCGCTCGACCGGCGCGTC
AAGGAGGCGCTCATAAGGGTATGCAGCGCTAGGCGCGTTGTTGCTTGCTC
ACGGCGTGAAAGACCCAGCTGA

protein sequence of jgi.p|Trimin1|177349

>Trimin1|177349|e_gw1.150.59.1 ID=Trimin1|177349|e_gw1.150.59.1|Name=jgi.p|Trimin1|177349|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
PRSRELTRKDLLKKHLTRAMAASARHAREFHIMPQTFVLPHEYTAFVAAT
NIWIMKPVGLSRGRGIEVIDDVSAVRYSDSVVVQRYVGRPLLLGGYKFDL
RLYVLVTSFNPLEAFLYREGFARVSTRAYDVTAEGLRDRFVHLTNSSIQA
TRDSPLLDGELHETGGTKASLTYLWARLRRARVPVDRLWSDITALVVKAL
VACEPGVPAQPNAFELFGFDVLVDAALRPWLLEVNASPQMDRDHALDRRV
KEALIRVCSARRVVACSRRERPS*

mRNA from alignment at Contig_150:186226..191283+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_16217 ID=mRNA_16217|Name=jgi.p|Trimin1|177349|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5058bp|location=Sequence derived from alignment at Contig_150:186226..191283+ (Tribonema minus UTEX_B_3156 )
CCGCGCAGCCGCGAGCTCACGCGCAAGGACCTGCTCAAGAAGCACCTGAC
GCGCGCGATGGCGGCAAGCGCGCGGCACGCGCGCGAGTTTCACATCATGC
CCCAGACGTTCGTGCTGCCGCACGAGTACACGGCGTTCGTCGCGGCGTTC
TACGCTGCCGCAGAGGCTGCTGCTGCTGCCGGCGGCGGCGGCGGGGATGG
CAGCGGCGGCGGCAGCAGCGGCGCGGCGGCGCCTGAAGGCGGCGAAAGCG
GTATGTACGAGAAGTTGAAGTTCTCCTATGTCTTTTGTTTCAGAGAGGCG
TGGGTGAATATGCAACAAGCAGTCGCTTTGCAGCAGCGTTCAGCATCACC
ATGCCGCAGATGCGGCAGAGCCAAGCGGCATTAGAATTAGGGCGAAACGT
GAGCGTTAAGGTTAGAGTGGGGGTCAGGCGCTTGACTCATGAGCGTGCAG
CTCTAGCAAGGCGTTATCGCATCCACACAGCGCGCAACCTCCCCAATATT
CAGCTTCTTGCAGTGCTACACCACGCAGCAGTAGTGACATGTGGTGTGTG
CCAAGCTTGCGCGCGAACAGTCTCAAGCTCCTGTGCCCTAACCCTATCCT
CGGCCGCTCTTGCTGCTATCGTCAGCGGGCAATGGTGCAGCTGGGGTTCA
AGCAGCCTCTGGCGAACGCCCCTGCTCGGCTGACAGGACCAACATTTGGA
TCATGAAGCCCGTCGGGCTGAGTCGCGGGCGCGGAATTGAAGTTATCGAC
GATGTCAGGTGCGTTGTACATCGAACACTCGCCATGTGCTCCCTCCTTCG
CGATGCGTCATGCTTTGCTTGTGCCGGCGACACAAATTTGGCATAACTGG
CATAAACGTACATCTAATGATACACTTCTATTTGTATACACATGACAGTG
TAGTGATATGTATGCACAATAGCGGCTTGCGGTGATGCGCCAATCTGCAC
TCTCACAGTGCAACACTTGTGTGTCATGTAGCAAAGCAATGCGCCTTTCA
GAATGCAGTCGCCTCTCTGGTGCGCCAAAGGGACGCAGTAACAAAGTTGC
ACAGAAGATGAGAATGAGTAATAAGTACTCGAGGAGTACTACTCCCGATA
GAGCTGAAATTTACATGAGTGCTACAGTACAACTCCTGTTTCAAATATAA
ATTACATGAGTTCCAGAGTACTGCCCTCCTTACCATTGAAAATGTACACG
AGTCCAAGTACTGTACCCGAGTAGGTAATCGACGAGAACTCGAGTAGTCC
ACGAGTCCCATGAGCAAAGAGAGCCAAGCGTGCTCAAATGTTCCACAGAA
AGCTTCTTTTAGCATGTTTCGTTCCTCTTGCTGGAATGAGTATGCATTGT
GCATGGCAAGCTGCAGCACTCTGAATAATTTAACGTCAGGACGAGCAAGT
ATTCGTAGAGTGTTCCTTTGGAACTCCAGAATTGTGCATGAGTACTTGAG
AACTACTTCCATCATATTGAAAATTTACACGAGTACATGAGGACCACTCC
TGTAAATGTTATTAAAGTTTACACAAAGCATCGACCACGTCTCCTTGTCT
GGCAACGAGCAGTACTCTTACTCCTTAAAAGTACTCGTGTTCGTCCTGTC
TGTGCAAGGTTGCTGTGAACAGGAAAACTGAGGCTCATGGGTATGCACGT
ACACATACACGCCTGCCCATCTCTTACCCTGAGCCAAGTGCACTATGGTT
ACTTGCGCCAGAAGCAAAGAAAAAAAAGGCGGCAGTTGAAGATGCATATA
CCAATGTGTGATTGTGTGGTACTCATGCGGCGGCAGTGCGGCTGGTGTGC
TACAGCCGCAGCGTTGTCGTGCAGCACTATGTGCAGCCACACCACTTCGC
ATCCTGCGCGTACTCCTCACTTAGCGGTAAGGGTAGCGTTAGGGTCACTT
ATCCCTGTTGCACGTGCACGCAGCATCCGCAACACCATTAAGGACATTCT
TTATGCGTGCCTGCGCATTGCGCTGTTGTGTTGTGGGTAGAGCGTTCGGT
GCGCTACAGTGACCTCATCGCCGCGCAGCACTGCTACCGCACCGCTGCGC
ACCCGCGCGCAAACTGCGCACGTGCGGCAGACCCAGCACTTTTACAACCA
AGACTTTGAACTTGAGCTTATCGTACACTCCTGTTCTTGTGACGCGCTGT
CTGCGAATGGCGGCACCGCCGTGCGCTACAGCGACAGCATCGTCGTGCAG
CGCCTCTGTGTACCTATGCGATCACGCCGCTCTGCATTTCATCCATGACC
TCTGCGCACACATCGCGCTCGCGTCTCCGACCAAGCATAAACCACGCTCA
AGACCTGATCACGTACTCCTGCTGTCACGATGCGCCGTTCCGGTTCTGAA
CTTTTGCCAAGTAGGGAAGGTTTAAAAACTCTGAAGTGAAGTTTGAACAG
GGCTCAGTGCTCATCACGGATTACTCACCAGCTGCAACACCAGTCCCTTC
ACCTCATAAACCTCGCAACGCGGCGCGCTACAGCAACGGCGTCGTCACTG
TGCACACAGTCACGCCGCTCTGCACTTGACTATGACCTGTGCACACACGT
CGCGCTCCCTTCTTCAACTGTGCATACTTGAAGTATATAACTCACGCCGC
TCAGGACCTGACCATGTTGCCGCCGCGATGCTCTGTTCCACCGCCGCAGC
GCCGTGCGCTACAGCGACAGCGTCGTCGTGCAGCGCTACGTCGGGCGCCC
GCTGCTGCTGGGCGGCTACAAGTTCGACCTGCGCCTGTACGTCCTCGTGA
CGTCCTTCAACCCGCTGGAGGCGTTCCTGTATCGCGAAGGCTTCGCGCGC
GTGAGCACGCGCGCGTACGACGTAACTGCCGAGGGCCTGCGCGACCGCTT
CGTGCACCTCACCAACAGCAGCATACAGGCAAGTGGGTGACTCTCCTCTG
CGCGGCAATGTCCCTGTGCAGTAGCGTGCGTGCATGCAGGTGTAAACTGT
AAGTACTTTGCAGTATCTTTGTGTTCATGATGGCCATCGCGTGGTGATTG
AATTAGTACTATGAAAAGGGCCGCTTTGTGCACCTCACCAACAGCAGCAT
ACAGGCGAGTGGTGACGCTCCTATGCGGCACGGAAGTGTGCGCATTTAGG
TGCACACTGCAACTACTTCGTAGTGTCATTATGACCATGGTGGCCATCCA
TGATCATGATGGTCACTGAATCGGTGCTACACAAAGGTCCGCTTTGTGCA
CCTCACGGACAGTGGCATATGTTCTAGTGGTGACGCTCATGCACTTGGTG
ATGCTCTTATGCAAGCCGAAGCGTCCGTATAGAGGTACATGCACACCATG
GGCGGTCCCTGACGAGAGCTGAGGCCCATTTGATTGGGGTTAGGGTTAGG
TTCAGGTCCAGGCTGTGGTGCCAAGCTTGAAGTTGATCTCCTAGGATTTT
CGGCTCTGGGGCGGATGTTCCAGGAGTGCTTAGAGGTGCTCATGTGGCGC
CATCACTTAGGGTTAGGGTTAAGCAATTGCCCATCTGCCGTCGGTATCCA
TTGCACCTCCCATTTCCAGCGATATGCACACGTAATGCCCTGCGCAGAAG
CTCAGCAAGGCACGCATGCATGACCTGCGCAGATGCTCGACAACACGTGT
AGATGTATGAACCGCGCAACAGCTCAACAAGGCAAGTCACCTTTGCAGAA
GTTCAACAAGGCGTTGAAGAACGACCTGCACAGAAGTGAGGTCTGCACAT
ATAACCGGCGCAGACTCTCAACAGCGCATGTATATACTTCGAAGTACTTC
GAAGTATGATTGCGCGAGACTCATTAGGGCATGTATGCATGAAGTGTGCA
GAAGTTTGACCAGCTGTGTATGTATCATGACCCGCGCAGAAACTCAACGA
GGAGGGGGCAGCGCGTGACTCTCCCCTGCTCGACGGCGAGCTGCACGAGA
CGGGCGGCACCAAGGTAACTTCAACCCTACATAGGTGGTGCAGGCCACAC
CCTATGCTTTCTGTTCGCGGTTTCGTAAGTTTGTTGCAGGTCACTGACAA
CATGTGTTACTGTATACATATACAGAACGTTCACATTCAAAAGCCACATA
TTATTGCACCGCGCGTCAAGACATGTGCTGTTTGCTGTAACCGCGCGCAC
TGAGCCCGACTTGGTGCGGTACTGTGAGCCAGATCATGCATGGCACGCAG
CGCCGCCCGCGCTCATGCGCCCCACTTCGCTCCCATCCCCATTTAAAAGT
ACGGCTGCCGTCATGCTGTGTCCTCGTTGACTCTTCTCCCAGCCCGTGCC
ACAAAACTTTGGTGCCGTCGCTCACCTACCTGCAGCTCTGCTCGGCCACC
CTAACCCTAACCCTAACCCAAACTTCAGTCACTGCACAAACACCGTCCTC
GGCGTATCGACGCGTATTACCCTGACCTGAGCGCTAAAGCTCATGTGCGC
CGCCGCAGGCATCGCTCAGCTACCTGTGGCTGTGCCTGGGGGTACGGGTG
ACCCGCGCTCCAACAACCGGTTTGTGTGCTTCCATCTTGCACCGTCAGTT
CCCCGCATTATCCTCTTCATTGACATGAAGTGTACAGCTAACCTGAGCGC
TGCAACGAGTGCGCGCTGCAGGCATCGCTCAGCTACCTGTGGGCACGCCT
CAGACGCGCGCGCGTGCCGGTGGACCGCCTGTGGTCCGACATCACTGATT
GATCCTCTTCCTTGACTTGAAGTGCACACCCTCTTCCTTGACTTGAAGTG
TACGGCTAACCTGAACGCTGCCACGTGGGCGCCGCCGCAGGCATCGCTCA
CCTACCTGTGGGCGCGGCTGCGACGCGCGCGCGTGCCGGTGGATCGCCTG
TGGTCCGACATCACCGCGCTCGTCGTCAAGGCGCTCGTGGCGTGCGAGCC
GGGCGTCCCTGCGCAGCCCAACGCGTTCGAGCTGTTTGGCTTCGACGTGC
TGGTGGATGCCGCGCTGCGGCCGTGGCTGCTGGAGGTCAACGCGTCGCCG
CAGATGGACCGGGACCACGCGCTCGACCGGCGCGTCAAGGAGGCGCTCAT
AAGGGTATGCAGCGCTAGGCGCGTTGTTGCTTGCTCACGGCGTGAAAGAC
CCAGCTGA

Coding sequence (CDS) from alignment at Contig_150:186226..191283+

>mRNA_16217 ID=mRNA_16217|Name=jgi.p|Trimin1|177349|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_150:186226..191283+ (Tribonema minus UTEX_B_3156 )
CCGCGCAGCCGCGAGCTCACGCGCAAGGACCTGCTCAAGAAGCACCTGAC
GCGCGCGATGGCGGCAAGCGCGCGGCACGCGCGCGAGTTTCACATCATGC
CCCAGACGTTCGTGCTGCCGCACGAGTACACGGCGTTCGTCGCGGCGACC
AACATTTGGATCATGAAGCCCGTCGGGCTGAGTCGCGGGCGCGGAATTGA
AGTTATCGACGATGTCAGCGCCGTGCGCTACAGCGACAGCGTCGTCGTGC
AGCGCTACGTCGGGCGCCCGCTGCTGCTGGGCGGCTACAAGTTCGACCTG
CGCCTGTACGTCCTCGTGACGTCCTTCAACCCGCTGGAGGCGTTCCTGTA
TCGCGAAGGCTTCGCGCGCGTGAGCACGCGCGCGTACGACGTAACTGCCG
AGGGCCTGCGCGACCGCTTCGTGCACCTCACCAACAGCAGCATACAGGCA
ACGCGTGACTCTCCCCTGCTCGACGGCGAGCTGCACGAGACGGGCGGCAC
CAAGGCATCGCTCACCTACCTGTGGGCGCGGCTGCGACGCGCGCGCGTGC
CGGTGGATCGCCTGTGGTCCGACATCACCGCGCTCGTCGTCAAGGCGCTC
GTGGCGTGCGAGCCGGGCGTCCCTGCGCAGCCCAACGCGTTCGAGCTGTT
TGGCTTCGACGTGCTGGTGGATGCCGCGCTGCGGCCGTGGCTGCTGGAGG
TCAACGCGTCGCCGCAGATGGACCGGGACCACGCGCTCGACCGGCGCGTC
AAGGAGGCGCTCATAAGGGTATGCAGCGCTAGGCGCGTTGTTGCTTGCTC
ACGGCGTGAAAGACCCAGCTGA