mRNA_16214 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177378
Unique NamemRNA_16214
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177378 vs. uniprot
Match: A0A835Z8L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.860e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 QAVDEVARNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEAAAGNVTVRR 192
            QAVDEVARNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEAAAGNVTVRR
Sbjct:    1 QAVDEVARNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEAAAGNVTVRR 64
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BLAST of jgi.p|Trimin1|177378 vs. uniprot
Match: D8LK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK45_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.720e-17
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 QAVDEVARNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEAAAGNVTVRR 192
            + VDEV+R  MW EVI KENA IG PH FFL+P+KL F+ RKPTEVDPR   A++ +    V R
Sbjct:    7 KVVDEVSRQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQVLR 70
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BLAST of jgi.p|Trimin1|177378 vs. uniprot
Match: A0A6H5KJJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.760e-12
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   31 MWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEA 165
            MW EVI KENA IG PH FFL+P+KL F+ RKPTEVDPR   A++
Sbjct:    1 MWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADS 45
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177378 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z8L4_9STRA7.860e-39100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LK45_ECTSI3.720e-1757.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJJ2_9PHAE1.760e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_150contigContig_150:148861..149055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177378|e_gw1.150.57.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAM183 family
Ec32 orthologEc-06_008140.1
TranscriptId177700
TrackFilteredModels1
ProteinId177378
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177378gene_16214Tribonema minus UTEX_B_3156 geneContig_150 148861..149055 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16214_1exon_16214_1Tribonema minus UTEX_B_3156 exonContig_150 148861..149055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16214CDS_16214Tribonema minus UTEX_B_3156 CDSContig_150 148861..149055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177378Trimin1|177378|e_gw1.150.57.1Tribonema minus UTEX_B_3156 polypeptideContig_150 148861..149055 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16214 ID=mRNA_16214|Name=jgi.p|Trimin1|177378|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_150:148861..149055- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGCTGTAGATGAGGTCGCCAGGAATAAAATGTGGGTGGAAGTGATCAA
CAAGGAAAACGCGGTAATCGGGCGGCCGCACACATTCTTCCTGGACCCCA
GCAAGCTGTGCTTCCTGCCGCGCAAGCCGACGGAGGTGGATCCGAGGGCC
CTCGCGGCGGAGGCGGCGGCGGGCAATGTCACGGTGAGAAGGTGA
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protein sequence of jgi.p|Trimin1|177378

>Trimin1|177378|e_gw1.150.57.1 ID=Trimin1|177378|e_gw1.150.57.1|Name=jgi.p|Trimin1|177378|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
QAVDEVARNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRA
LAAEAAAGNVTVRR*
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mRNA from alignment at Contig_150:148861..149055-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16214 ID=mRNA_16214|Name=jgi.p|Trimin1|177378|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_150:148861..149055- (Tribonema minus UTEX_B_3156 )
CAGGCTGTAGATGAGGTCGCCAGGAATAAAATGTGGGTGGAAGTGATCAA
CAAGGAAAACGCGGTAATCGGGCGGCCGCACACATTCTTCCTGGACCCCA
GCAAGCTGTGCTTCCTGCCGCGCAAGCCGACGGAGGTGGATCCGAGGGCC
CTCGCGGCGGAGGCGGCGGCGGGCAATGTCACGGTGAGAAGGTGA
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Coding sequence (CDS) from alignment at Contig_150:148861..149055-

>mRNA_16214 ID=mRNA_16214|Name=jgi.p|Trimin1|177378|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_150:148861..149055- (Tribonema minus UTEX_B_3156 )
CAGGCTGTAGATGAGGTCGCCAGGAATAAAATGTGGGTGGAAGTGATCAA
CAAGGAAAACGCGGTAATCGGGCGGCCGCACACATTCTTCCTGGACCCCA
GCAAGCTGTGCTTCCTGCCGCGCAAGCCGACGGAGGTGGATCCGAGGGCC
CTCGCGGCGGAGGCGGCGGCGGGCAATGTCACGGTGAGAAGGTGA
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