mRNA_16202 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177380
Unique NamemRNA_16202
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: A0A835ZEM1_9STRA (BTB/POZ protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM1_9STRA)

HSP 1 Score: 432 bits (1110), Expect = 4.400e-153
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1 
Query:    1 MPRLSAVVELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLLLVLDNAEQPSKPADAGQARFEYAWVMEALPRARPIHEGYWSNQGEKDRRLQETVDHQGLVQLPKLTLLVQQGWQLVETHYAHNVVKIRDGRGRVHCDSYSEAHMLVKRLIVESDV 645
            MPRLSAVVELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLLLVLDNAEQPSKPADAGQARFEYAWVMEALPRARPIHEGYWSNQGEKDRRLQETVDHQGLVQLPKLTLLVQQGWQLVETHYAHNVVKIRDGRGRVHCDSYSEAHMLVKRLIVESDV
Sbjct:    1 MPRLSAVVELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLLLVLDNAEQPSKPADAGQARFEYAWVMEALPRARPIHEGYWSNQGEKDRRLQETVDHQGLVQLPKLTLLVQQGWQLVETHYAHNVVKIRDGRGRVHCDSYSEAHMLVKRLIVESDV 215
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: A0A835ZEN3_9STRA (BTB/POZ protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEN3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.730e-20
Identity = 46/74 (62.16%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:   13 SAVVELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPT 234
            +AVVELNVGG  FTT+RSTL A+P+SMLAR+V G++ SA D+Q R+FIDR+GS F+++L+YLR  G   F+LPT
Sbjct:   10 AAVVELNVGGALFTTTRSTLAADPDSMLARLVNGNLSSARDAQRRLFIDRDGSNFNIILQYLRNRG--RFSLPT 81
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: A0A835ZD86_9STRA (BTB_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD86_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.180e-20
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:   61 RSTLTAEPNSMLARMV-QGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREY--GGDHFALPT-LTADSLARLRREVEFYGLEGLLLVLD 312
            RSTL AEPNSMLAR+V  G   SA D+QGR+FIDR+G+ F ++LEYLR+   G D +A+PT + A  L  LRRE +FY LEGL+L+LD
Sbjct:   20 RSTLAAEPNSMLARLVWHGLRNSARDAQGRVFIDRDGTHFGIILEYLRDCQCGHDDYAVPTDMGARELCALRREAQFYELEGLMLLLD 107
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: A0A0D2U1A7_CAPO3 (BTB domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U1A7_CAPO3)

HSP 1 Score: 96.3 bits (238), Expect = 1.910e-19
Identity = 54/108 (50.00%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:   19 VVELNVGGTPFTTSRSTLTA-EPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLLLVLDNAEQPSKPA 339
            ++ LNVGG  F+TS  TLT  EP+SMLA M  GD P  +D  G  FIDR+G+ F  +L YLR YG  H AL +LT D+L +LR E +F+ L GLL +L     PS  A
Sbjct:  367 IIHLNVGGQRFSTSLETLTGLEPDSMLAAMFSGDFPIRQDPDGCYFIDRDGTHFRHILNYLR-YGRVHIALTSLTRDTLMQLREEADFFQLRGLLQLLPEGRDPSVSA 473
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: A0A8C4R8F7_EPTBU (Potassium channel tetramerization domain containing 6a n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R8F7_EPTBU)

HSP 1 Score: 88.2 bits (217), Expect = 8.010e-18
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = 1 
Query:   22 VELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTAD--SLARLRREVEFYGLEGLLLVLDNAEQPSKPADAGQARFEYAWVMEALPRARPI 405
            V LNVGG  +TTS STL+  P+SML  M  GD+P+A DSQG  FIDR+GSLF  VL +LR       ++ TL  D   +  LR E +FY +E L+  L N  +P  P D  +   E + V +    + P+
Sbjct:   24 VTLNVGGQLYTTSMSTLSRYPDSMLGAMFHGDLPTARDSQGNYFIDRDGSLFRFVLNFLRT------SVLTLPQDFKEIDLLREEADFYQIEALIQCL-NEPRPLYPVDTFEETVELSSVRKLSKYSNPV 146
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: UPI0001FE3212 (potassium channel tetramerisation domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE3212)

HSP 1 Score: 85.5 bits (210), Expect = 7.680e-17
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:   49 FTTSRSTLTA-EPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLLLVLDNAEQPSKPA 339
            F+TS  TLT  EP+SMLA M  GD P  +D  G  FIDR+G+ F  +L YLR YG  H AL +LT D+L +LR E +F+ L GLL +L     PS  A
Sbjct:   18 FSTSLETLTGLEPDSMLAAMFSGDFPIRQDPDGCYFIDRDGTHFRHILNYLR-YGRVHIALTSLTRDTLMQLREEADFFQLRGLLQLLPEGRDPSVSA 114
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: A0A8B9VIQ1_9AVES (BTB domain-containing protein n=1 Tax=Anas zonorhyncha TaxID=75864 RepID=A0A8B9VIQ1_9AVES)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-16
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    1 MPRLSAVVELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLLLVLDN 315
            +P ++  V LNVGG  +TTS +TLT  P+SML  M +GD P+A DSQG  FIDR+G LF  VL +LR        LP L       LR+E +FY +E L+  L++
Sbjct:    7 LPGMTDPVTLNVGGHMYTTSLTTLTRYPDSMLGAMFRGDFPTARDSQGNYFIDRDGPLFRYVLNFLRT---SELTLP-LDFKEFDLLRKEADFYQIEPLIQCLND 107
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: A0A803VS27_FICAL (Potassium channel tetramerization domain containing 6 n=166 Tax=Euteleostomi TaxID=117571 RepID=A0A803VS27_FICAL)

HSP 1 Score: 83.6 bits (205), Expect = 5.350e-16
Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:   22 VELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLLLVLDNAEQPSKPADAGQARFEYAWVMEALPRARPI 405
            V LNVGG  +TTS +TLT  P+SML  M +GD P+A DSQG  FIDR+G LF  VL +LR        LP L       LR+E +FY +E L+  L N  +P  P D  +   E +   +    + P+
Sbjct:   14 VTLNVGGHMYTTSLTTLTRYPDSMLGAMFRGDFPTARDSQGNYFIDRDGPLFRYVLNFLRT---SELTLP-LDFKEFDLLRKEADFYQIEPLIQCL-NDPKPLYPVDTFEEVVELSSTRKLSKYSNPV 136
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: A0A8B7XHA0_ACAPL (BTB/POZ domain-containing protein KCTD8-like n=3 Tax=Asteroidea TaxID=7588 RepID=A0A8B7XHA0_ACAPL)

HSP 1 Score: 83.6 bits (205), Expect = 6.240e-16
Identity = 54/111 (48.65%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:   16 AVVELNVGGTPFTTSRSTLTAEPNSMLARMVQGDM--PSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLLLVLDNAEQPSKPAD 342
            AVVELNVGG  +TT+ STLT + +SMLA+M  G    P   DS+GR FIDR+GSLF  +L+YLR        LP   A+   RLR+E E+Y L  L   L  A Q    AD
Sbjct:    9 AVVELNVGGQLYTTALSTLTQQGDSMLAQMFTGRTRGPLQRDSRGRYFIDRDGSLFKYILDYLRN---QKLVLPENFAER-GRLRQEAEYYQLSRLANALSEAAQADSTAD 115
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BLAST of jgi.p|Trimin1|177380 vs. uniprot
Match: C3YLA6_BRAFL (BTB domain-containing protein (Fragment) n=3 Tax=Branchiostoma TaxID=7737 RepID=C3YLA6_BRAFL)

HSP 1 Score: 79.3 bits (194), Expect = 8.740e-16
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   10 LSAVVELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRIFIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLL 300
            +S  V LNVGG  +TTS STLT+ P+SML  M  GD+P+  D QGR FIDR+G LF  VL +LR        LP      +++L++E +FY ++ L+
Sbjct:    1 MSPPVALNVGGHIYTTSLSTLTSYPDSMLGAMFSGDIPTGRDDQGRYFIDRDGELFRFVLNFLRT---TELLLPD-DFKEISQLKKEADFYQIQPLI 93
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177380 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEM1_9STRA4.400e-153100.00BTB/POZ protein n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A835ZEN3_9STRA1.730e-2062.16BTB/POZ protein n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A835ZD86_9STRA3.180e-2059.09BTB_2 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A0D2U1A7_CAPO31.910e-1950.00BTB domain-containing protein n=1 Tax=Capsaspora o... [more]
A0A8C4R8F7_EPTBU8.010e-1842.31Potassium channel tetramerization domain containin... [more]
UPI0001FE32127.680e-1750.00potassium channel tetramerisation domain-containin... [more]
A0A8B9VIQ1_9AVES1.030e-1645.71BTB domain-containing protein n=1 Tax=Anas zonorhy... [more]
A0A803VS27_FICAL5.350e-1641.41Potassium channel tetramerization domain containin... [more]
A0A8B7XHA0_ACAPL6.240e-1648.65BTB/POZ domain-containing protein KCTD8-like n=3 T... [more]
C3YLA6_BRAFL8.740e-1645.36BTB domain-containing protein (Fragment) n=3 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_150contigContig_150:46075..46972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177380|e_gw1.150.27.1
BRITEko00000,ko04121
KEGG koko:K21917,ko:K21919,ko:K21922
Descriptionprotein homooligomerization
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1357@1|root,KOG1665@2759|Eukaryota
Evalue1.26e-17
Seed ortholog192875.XP_004365430.1
Hectar predicted targeting categoryother localisation
TranscriptId177702
TrackFilteredModels1
ProteinId177380
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177380gene_16202Tribonema minus UTEX_B_3156 geneContig_150 46075..46972 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16202_1exon_16202_1Tribonema minus UTEX_B_3156 exonContig_150 46075..46139 +
exon_16202_2exon_16202_2Tribonema minus UTEX_B_3156 exonContig_150 46390..46972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16202CDS_16202Tribonema minus UTEX_B_3156 CDSContig_150 46075..46139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177380Trimin1|177380|e_gw1.150.27.1Tribonema minus UTEX_B_3156 polypeptideContig_150 46075..46972 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16202 ID=mRNA_16202|Name=jgi.p|Trimin1|177380|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_150:46075..46972+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGCCTCTCAGCAGTGGTGGAGCTTAACGTCGGGGGTACGCCCTT
CACCACTTCTCGCAGCACGCTGACAGCAGAGCCCAACAGCATGCTCGCCA
GGATGGTGCAGGGCGACATGCCCAGCGCCGAGGACTCACAAGGGCGCATC
TTCATCGATCGAAACGGATCTCTCTTTCATGTGGTGCTGGAGTACCTGAG
AGAGTATGGGGGCGACCACTTCGCGCTGCCAACCTTGACTGCAGACAGCC
TCGCCCGTCTGCGCCGCGAAGTAGAGTTCTATGGGCTGGAGGGGCTGTTA
TTGGTGCTAGATAACGCAGAACAGCCGTCCAAGCCAGCCGACGCAGGGCA
GGCAAGGTTTGAGTACGCGTGGGTGATGGAGGCCCTGCCTCGAGCCCGCC
CCATACACGAAGGCTACTGGTCCAATCAAGGGGAGAAAGATCGCAGACTC
CAAGAGACAGTGGATCACCAGGGCCTGGTGCAGCTGCCAAAATTGACGCT
GCTCGTACAACAGGGCTGGCAACTTGTGGAAACACACTACGCACACAATG
TGGTAAAAATTCGGGATGGTCGCGGACGCGTGCACTGCGATTCCTACAGT
GAAGCGCATATGCTGGTGAAGAGGCTAATTGTTGAGTCTGATGTATAG
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protein sequence of jgi.p|Trimin1|177380

>Trimin1|177380|e_gw1.150.27.1 ID=Trimin1|177380|e_gw1.150.27.1|Name=jgi.p|Trimin1|177380|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp
MPRLSAVVELNVGGTPFTTSRSTLTAEPNSMLARMVQGDMPSAEDSQGRI
FIDRNGSLFHVVLEYLREYGGDHFALPTLTADSLARLRREVEFYGLEGLL
LVLDNAEQPSKPADAGQARFEYAWVMEALPRARPIHEGYWSNQGEKDRRL
QETVDHQGLVQLPKLTLLVQQGWQLVETHYAHNVVKIRDGRGRVHCDSYS
EAHMLVKRLIVESDV*
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mRNA from alignment at Contig_150:46075..46972+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16202 ID=mRNA_16202|Name=jgi.p|Trimin1|177380|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=898bp|location=Sequence derived from alignment at Contig_150:46075..46972+ (Tribonema minus UTEX_B_3156 )
ATGCCACGCCTCTCAGCAGTGGTGGAGCTTAACGTCGGGGGTACGCCCTT
CACCACTTCTCGCAGGTTAGCAGCTGCAGTCGCAACATGCAATGGTGCGG
CGTAAGTCAAATCATGTCAGAACTGTGCTGTGCAGTACCCGGTAGGGACG
GGCTTCGCGCTCGGACGCGCTCTGCAATCATCCTGCAGCTGCACACGAAG
TAGTAGCAACACCCCTTTCATGTTGATTTTGGTTTGCCAGCACACAAGCA
TGTCTCTTGAGACAATTTGCAATGACCGCCGCCACACCGCTGCTGTCCCC
TCCCCCACCCGGCAGCACGCTGACAGCAGAGCCCAACAGCATGCTCGCCA
GGATGGTGCAGGGCGACATGCCCAGCGCCGAGGACTCACAAGGGCGCATC
TTCATCGATCGAAACGGATCTCTCTTTCATGTGGTGCTGGAGTACCTGAG
AGAGTATGGGGGCGACCACTTCGCGCTGCCAACCTTGACTGCAGACAGCC
TCGCCCGTCTGCGCCGCGAAGTAGAGTTCTATGGGCTGGAGGGGCTGTTA
TTGGTGCTAGATAACGCAGAACAGCCGTCCAAGCCAGCCGACGCAGGGCA
GGCAAGGTTTGAGTACGCGTGGGTGATGGAGGCCCTGCCTCGAGCCCGCC
CCATACACGAAGGCTACTGGTCCAATCAAGGGGAGAAAGATCGCAGACTC
CAAGAGACAGTGGATCACCAGGGCCTGGTGCAGCTGCCAAAATTGACGCT
GCTCGTACAACAGGGCTGGCAACTTGTGGAAACACACTACGCACACAATG
TGGTAAAAATTCGGGATGGTCGCGGACGCGTGCACTGCGATTCCTACAGT
GAAGCGCATATGCTGGTGAAGAGGCTAATTGTTGAGTCTGATGTATAG
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Coding sequence (CDS) from alignment at Contig_150:46075..46972+

>mRNA_16202 ID=mRNA_16202|Name=jgi.p|Trimin1|177380|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_150:46075..46972+ (Tribonema minus UTEX_B_3156 )
ATGCCACGCCTCTCAGCAGTGGTGGAGCTTAACGTCGGGGGTACGCCCTT
CACCACTTCTCGCAGCACGCTGACAGCAGAGCCCAACAGCATGCTCGCCA
GGATGGTGCAGGGCGACATGCCCAGCGCCGAGGACTCACAAGGGCGCATC
TTCATCGATCGAAACGGATCTCTCTTTCATGTGGTGCTGGAGTACCTGAG
AGAGTATGGGGGCGACCACTTCGCGCTGCCAACCTTGACTGCAGACAGCC
TCGCCCGTCTGCGCCGCGAAGTAGAGTTCTATGGGCTGGAGGGGCTGTTA
TTGGTGCTAGATAACGCAGAACAGCCGTCCAAGCCAGCCGACGCAGGGCA
GGCAAGGTTTGAGTACGCGTGGGTGATGGAGGCCCTGCCTCGAGCCCGCC
CCATACACGAAGGCTACTGGTCCAATCAAGGGGAGAAAGATCGCAGACTC
CAAGAGACAGTGGATCACCAGGGCCTGGTGCAGCTGCCAAAATTGACGCT
GCTCGTACAACAGGGCTGGCAACTTGTGGAAACACACTACGCACACAATG
TGGTAAAAATTCGGGATGGTCGCGGACGCGTGCACTGCGATTCCTACAGT
GAAGCGCATATGCTGGTGAAGAGGCTAATTGTTGAGTCTGATGTATAG
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