mRNA_16129 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A835Z9Y8_9STRA (Galactose mutarotase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y8_9STRA) HSP 1 Score: 806 bits (2081), Expect = 1.660e-291 Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 1
Query: 1 MLPSVATSVFGSISGAEVVRYDLQCPSLTASFINYGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRIDGGGKPGFASGMSFRAPMGGXXXGLAVFGPAKREAGEAQPKRAAASXXXXXXXXXXXQRQPMRHGLDHCFVVDGAPTDALSASALRPMASYXXXXXXXXXXXXXXXXXXXXXXTLSHAPSGRRVQLHGTQPGLQVNGGGAVHHSLLMTLPASAPGLQVYTNNWGSEDEGDAPHCQHWAVALETQAFPNAVNVPAWATQVILRRGQKYWHVSRHTFSTF 1392
MLPSVATSVFGSISGAEVVRYDLQCPSLTASFINYGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRIDGGGKPGFASGMSFRAPMGGXXXGLAVFGPAKREAGEAQPKRAAASXXXXXXXXXXXQRQPMRHGLDHCFVVDGAPTDALSASALRPMASYXXXXXXXXXXXXXXXXXXXXXXTLSHAPSGRRVQLHGTQPGLQVNGGGAVHHSLLMTLPASAPGLQVYTNNWGSEDEGDAPHCQHWAVALETQAFPNAVNVPAWATQVILRRGQKYWHVSRHTFSTF
Sbjct: 1 MLPSVATSVFGSISGAEVVRYDLQCPSLTASFINYGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRIDGGGKPGFASGMSFRAPMGGXXXGLAVFGPAKREAGEAQPKRAAASXXXXXXXXXXXQRQPMRHGLDHCFVVDGAPTDALSASALRPMASYXXXXXXXXXXXXXXXXXXXXXXTLSHAPSGRRVQLHGTQPGLQVNGGGAVHHSLLMTLPASAPGLQVYTNNWGSEDEGDAPHCQHWAVALETQAFPNAVNVPAWATQVILRRGQKYWHVSRHTFSTF 464
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A6H5KFI7_9PHAE (Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI7_9PHAE) HSP 1 Score: 215 bits (547), Expect = 5.340e-61 Identity = 145/430 (33.72%), Postives = 186/430 (43.26%), Query Frame = 1
Query: 103 YGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPI--HAAQIPTGELAAVAGTPFDFAQPTELGGVISRIDGGGKPGFASGMSFRAPMGGXXXGLAVFGPAKREAGEAQPKRAAASXXXXXXXXXXXQRQPMRHGLDHCFVVDGAPTDALSASALRPMASYXXXXXXXXXXXXXXXXXXXXXXTLSHAPSGRRVQLHGTQPGLQVNGGGAVHHSLLMTLPASAPGLQVYTNNWGSEDEGDAPHCQHWAVALETQAFPNAVNVPAWATQVILRRGQKYWHVSRHTFS 1386
YGSTVGRV NRI G F++DG ++ NNGP+ LHGG K FDK +W HE S+ +GVRF Y SPDGE GFPGA+ TYS M+ E +T+ + + TP+NLTNHAYWNLSG K V DHEL + C RYLP+ ++PTGE+ V GTPFDF Q LG I + GG PG + + G + RAAA+ ++G D +G P LS A SGR +++ G+QP QVYT+N+ S D D PH +H+AV LETQ FP AVN W V+L+ G+KY +RH F+
Sbjct: 75 YGSTVGRVCNRIVGASFSVDGEVISVDANNGPHCLHGGAKGFDKAVWRHEVFHTSDGIGVRFEYDSPDGEGGFPGALATKVTYSV-------------------------KRGSERGTGELHTAMEAEYVTDDDGGKEKNRGPTPVNLTNHAYWNLSGDRKRSVRDHELMMRCDRYLPLDEQPVRVPTGEIMPVLGTPFDFTQGASLGAAIDGV-GGNPPGVDNCLV--------------------RVGTSDGGRAAATSGG-------------KNGEDG----EGLPL----------------------------------IGRLSEAESGRVMEVFGSQPC-----------------------AQVYTSNYLSTDPADRPHARHYAVCLETQHFPAAVNHEGWMESVLLKPGEKYLERTRHVFT 384
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A7S2USM4_9STRA (Aldose 1-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USM4_9STRA) HSP 1 Score: 196 bits (497), Expect = 5.730e-54 Identity = 140/434 (32.26%), Postives = 186/434 (42.86%), Query Frame = 1
Query: 103 YGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSD-----SNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLT-GDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRIDGGGKPGFASGMSFRAPMGGXXXGLAVFGPAKREAGEAQPKRAAASXXXXXXXXXXXQRQPMRHGLDHCFVVDGAPTDALSASALRPMASYXXXXXXXXXXXXXXXXXXXXXXTLSHAPSGRRVQLHGTQPGLQVNGGGAVHHSLLMTLPASAPGLQVYTNNWGSEDEGDAPHCQHWAVALETQAFPNAVNVPAWATQVILRRGQKYWHVSRHTFS 1386
YGSTVGRVANRIA G+F L+G+++ + NNGP+ LHGG+ +DK +W VSD + SVG FS+ S DG+EGFPG + V Y IT NEL Y+A L G E+T +N+TNHAYWNLSG LK H LQ++ S+YLP+ IPTGE +VAGT FD PTELG + ++DG G DHCFV+D + + + M LSH SGR+++++GT PG LQVYT N E+ ++PH AV +E +AFP+A++ + + VIL GQ Y H +RH FS
Sbjct: 82 YGSTVGRVANRIANGKFGLNGKEYTIASNNGPHHLHGGIIGWDKVIWEKRVVSDIPDTEAGSVGCLFSHVSHDGDEGFPGTLYVQVLYW--------------------------------------ITPSNELHIRYKAELARGTTESTVVNMTNHAYWNLSGDLKEPARTHVLQVNASKYLPVVPPGIPTGEQNSVAGTAFDLKDPTELGQRLPQVDG--------------------------------------------------------------GFDHCFVID---REGIEEQQMCLMG------------------------VLSHPGSGRKMEVYGTHPG-----------------------LQVYTANGLPENAEESPHTFQNAVCMEAEAFPDAIHHSTFPS-VILNPGQTYHHHTRHCFS 364
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A257TUD1_9BACT (Aldose 1-epimerase n=1 Tax=Planctomycetia bacterium 21-64-5 TaxID=1970542 RepID=A0A257TUD1_9BACT) HSP 1 Score: 189 bits (479), Expect = 2.800e-51 Identity = 105/233 (45.06%), Postives = 134/233 (57.51%), Query Frame = 1
Query: 43 GAEVVRYDLQCPSLTASFINYGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRID 741
G + +D P L A +G+T GRVANRIA GRF LDG +++L NNGPN LHGG+K FDK LW+ EP+ +VGVR S+ SPDG+EG+PG + VT Y+ +T +NEL +Y A T D +ATPINLTNH YWNL+ G K DV H L++H RY+P+ A IPTGEL +V GTP DF +P E+G SR+D
Sbjct: 74 GEVTLGFDTLAPYL-AGHPYFGATCGRVANRIAKGRFTLDGVEYKLATNNGPNHLHGGLKGFDKALWTAEPIDKPGAVGVRLSHVSPDGDEGYPGKLSVTVAYT--------------------------------------LTDKNELKIDYTA--TTD-KATPINLTNHTYWNLADGGKSDVLGHVLEIHADRYVPVDANLIPTGELKSVKGTPMDFTKPMEIG---SRMD 261
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A2V7KTJ8_9BACT (Aldose 1-epimerase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7KTJ8_9BACT) HSP 1 Score: 185 bits (470), Expect = 5.610e-50 Identity = 96/214 (44.86%), Postives = 126/214 (58.88%), Query Frame = 1
Query: 103 YGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRIDG 744
+G+ VGR ANRIA GRF LDG ++ L +NNGPN+LHGGV+ FDK LWS EP + +++GV+ Y S DGEEG+PGA+ V TY+ + NEL+ EYEA T +ATP+NL+ H YWNL G +GD+ DH LQL+ S + P+ + IPTG++A VAGTPFDF Q +G +RIDG
Sbjct: 89 FGAIVGRYANRIAAGRFTLDGVEYHLAQNNGPNSLHGGVRGFDKVLWSAEPFENDSAMGVKLRYESADGEEGYPGALTVQVTYT--------------------------------------LNEANELIVEYEASTT---KATPLNLSQHTYWNLHGEGRGDILDHVLQLNASAFTPVDSTLIPTGKIAPVAGTPFDFRQSAAVG---ARIDG 258
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A6J4K4W8_9BACT (Aldose 1-epimerase n=1 Tax=uncultured Gemmatimonadaceae bacterium TaxID=246130 RepID=A0A6J4K4W8_9BACT) HSP 1 Score: 183 bits (464), Expect = 2.430e-49 Identity = 98/213 (46.01%), Postives = 123/213 (57.75%), Query Frame = 1
Query: 103 YGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRID 741
+G+ VGR ANRIA GRFALDG +QL RNNGPN+LHGG + FDK LW+ EP GVR Y+SPDGEEG+PG V V TY+ +T ++EL+ EY+A T D ATP+NL+ H+YWNL G +G + DH L L + + P+ A IPTGE+A VAGTPFDF PT +G +RID
Sbjct: 69 FGAVVGRYANRIAQGRFALDGASYQLARNNGPNSLHGGERGFDKVLWAAEPFEGDGGAGVRLRYTSPDGEEGYPGTVAVRVTYT--------------------------------------LTPRDELVVEYDA--TTD-RATPLNLSQHSYWNLHGAGRGTILDHLLTLDAAAFTPVDATLIPTGEIAPVAGTPFDFRAPTAVG---ARID 237
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A7C4QTR3_9PLAN (Aldose 1-epimerase n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4QTR3_9PLAN) HSP 1 Score: 184 bits (467), Expect = 2.800e-49 Identity = 97/213 (45.54%), Postives = 121/213 (56.81%), Query Frame = 1
Query: 103 YGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRID 741
+G GR ANRIA G+F LDGR++QL NNGP+ LHGG +F K++W HE V ++VGVRFSY SPDGEEG+PG +RV TY+ + +NEL +Y A + T +NLTNHAYWNL+G +G + DHEL L+C RYLP+ IPTGELA VAGTP DF P +G RID
Sbjct: 122 FGGICGRYANRIAFGKFTLDGREYQLATNNGPHHLHGGKVSFIKRVWDHERVDGDDAVGVRFSYVSPDGEEGYPGTLRVEVTYT--------------------------------------LNNENELRLDYRA---ETDQTTVLNLTNHAYWNLAGAGQGTILDHELTLYCDRYLPVDEGSIPTGELADVAGTPMDFRSPRRIG---ERID 290
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A350D446_9BACT (Aldose 1-epimerase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A350D446_9BACT) HSP 1 Score: 182 bits (462), Expect = 3.840e-49 Identity = 100/214 (46.73%), Postives = 124/214 (57.94%), Query Frame = 1
Query: 106 GSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRIDGG 747
G+T+GR ANRIA GRF L+GR++QL N+GPN LHGG+K FDK +WS EP S S + GVRFSY SPDGEEG+PG + TY +T N+L Y A T D T +NLTNH+Y+NLSGG K ++ DHELQ+ S Y P+ A IPTGE+ VAGTPFDF Q +G IS++ GG
Sbjct: 71 GATIGRYANRIARGRFVLEGREYQLAINDGPNHLHGGLKGFDKVIWSAEPFSQSLAAGVRFSYLSPDGEEGYPGNLSCQVTYL--------------------------------------LTDHNQLEISYRA--TTD-RLTHLNLTNHSYFNLSGGSKDNILDHELQIIASAYTPVDANLIPTGEIKTVAGTPFDFRQAVRIGERISQVRGG 243
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A2E0SME4_9PLAN (Aldose 1-epimerase (Fragment) n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SME4_9PLAN) HSP 1 Score: 180 bits (457), Expect = 4.870e-49 Identity = 92/214 (42.99%), Postives = 125/214 (58.41%), Query Frame = 1
Query: 103 YGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRIDG 744
+GS GR +NRIAGG+F+LDG+++ L NN PN LHGG + F+K+LW + + + + VG+ F+Y+SPDGEEG+PG++ VT Y+ + +NEL EY A T D + T +NLTNH YWNL+G G + DHELQL+C RY+P+ A IPTGELA VAGTP DF LG I +++G
Sbjct: 119 FGSICGRYSNRIAGGKFSLDGQEYTLATNNDPNHLHGGDEGFNKKLWMAKEIQEDDHVGIEFTYNSPDGEEGYPGSLTVTVAYT--------------------------------------LNNENELKLEYTA--TSDKK-TVLNLTNHCYWNLAGAGSGPILDHELQLNCDRYIPVDATGIPTGELAPVAGTPMDFTSFHTLGEQIEQVEG 291
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Match: A0A090MGC4_9BACT (Aldose 1-epimerase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A090MGC4_9BACT) HSP 1 Score: 180 bits (456), Expect = 3.470e-48 Identity = 98/213 (46.01%), Postives = 122/213 (57.28%), Query Frame = 1
Query: 103 YGSTVGRVANRIAGGRFALDGRDFQLERNNGPNTLHGGVKAFDKQLWSHEPVSDSNSVGVRFSYSSPDGEEGFPGAVRVTATYSAPLLLSLLLPSLXXXXXXXXXXXXXXXXXXXXXLPLRSITMQNELLTEYEACLTGDAEATPINLTNHAYWNLSGGLKGDVTDHELQLHCSRYLPIHAAQIPTGELAAVAGTPFDFAQPTELGGVISRID 741
+GS VGR NRIAGGRF LDG QL NNG N LHGG K FD+ +W EP GV F+YSS DGEEG+PG ++ + TY+ +T +NEL+ EY A T D +ATPINLTNH Y+NL+G +GD+ H++ LH +Y+P AAQIPTGE+A V GTPFDF P E+G +RID
Sbjct: 69 FGSIVGRYGNRIAGGRFMLDGSTVQLTINNGGNHLHGGAKGFDRAVWRSEPFDREAGSGVTFTYSSADGEEGYPGTLKTSVTYT--------------------------------------LTPRNELVLEYVA--TTD-KATPINLTNHTYFNLAGRGRGDILQHQMTLHAGQYVPTDAAQIPTGEIAPVTGTPFDFRTPVEIG---ARID 237 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353139 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16129 ID=mRNA_16129|Name=jgi.p|Trimin1|353139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1605bp|location=Sequence derived from alignment at Contig_146:24647..35289- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGCCCAGCGTGGCCACTTCCGTTTTCGGTAGCATATCTGGAGCCGAback to top protein sequence of jgi.p|Trimin1|353139 >Trimin1|353139|estExt_Genemark1.C_Ctg_1460004 ID=Trimin1|353139|estExt_Genemark1.C_Ctg_1460004|Name=jgi.p|Trimin1|353139|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=465bp MLPSVATSVFGSISGAEVVRYDLQCPSLTASFINYGSTVGRVANRIAGGRback to top mRNA from alignment at Contig_146:24647..35289- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16129 ID=mRNA_16129|Name=jgi.p|Trimin1|353139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10643bp|location=Sequence derived from alignment at Contig_146:24647..35289- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_146:24647..35289- >mRNA_16129 ID=mRNA_16129|Name=jgi.p|Trimin1|353139|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1395bp|location=Sequence derived from alignment at Contig_146:24647..35289- (Tribonema minus UTEX_B_3156 )back to top |