mRNA_16063 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178972
Unique NamemRNA_16063
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178972 vs. uniprot
Match: A0A835Z663_9STRA (Chitin-binding type-1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z663_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.730e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 GVCSDPKLCCSKYGYCGSTADYCAVVVIPNATCGNGNRGNRIXXXXXXXXXXXXXXXXXXXXXTSGTCGK 210
            GVCSDPKLCCSKYGYCGSTADYCAVVVIPNATCGNGNRGNRIXXXXXXXXXXXXXXXXXXXXXTSGTCGK
Sbjct:    1 GVCSDPKLCCSKYGYCGSTADYCAVVVIPNATCGNGNRGNRIXXXXXXXXXXXXXXXXXXXXXTSGTCGK 70
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178972 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z663_9STRA4.730e-27100.00Chitin-binding type-1 domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_181contigContig_181:104116..104328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178972|e_gw1.181.1.1
CAZyGH18
BRITEko00000,ko00001,ko01000
KEGG rclassRC00467
KEGG ReactionR01206,R02334
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG koko:K01183
EC3.2.1.14
DescriptionBelongs to the glycosyl hydrolase 18 family
COG categoryG
Max annot lvl4751|Fungi
EggNOG OGsCOG3325@1|root,KOG2806@2759|Eukaryota,38BJK@33154|Opisthokonta,3NVAI@4751|Fungi,3QMBI@4890|Ascomycota,20AUY@147545|Eurotiomycetes,3B6GF@33183|Onygenales,3FYH6@34384|Arthrodermataceae
Evalue0.000237
Seed ortholog63405.XP_002848484.1
Hectar predicted targeting categoryother localisation
TranscriptId179294
TrackFilteredModels1
ProteinId178972
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178972gene_16063Tribonema minus UTEX_B_3156 geneContig_181 104116..104328 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16063_1exon_16063_1Tribonema minus UTEX_B_3156 exonContig_181 104116..104328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16063CDS_16063Tribonema minus UTEX_B_3156 CDSContig_181 104116..104328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178972Trimin1|178972|e_gw1.181.1.1Tribonema minus UTEX_B_3156 polypeptideContig_181 104116..104328 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16063 ID=mRNA_16063|Name=jgi.p|Trimin1|178972|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_181:104116..104328+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTGTATGCTCAGACCCCAAGCTGTGCTGCAGCAAATATGGCTATTGCGG
CAGCACGGCGGATTACTGTGCGGTAGTGGTGATTCCTAATGCCACTTGTG
GCAATGGCAACAGGGGCAACAGAATTTGCTTCGACTCCACACACTGTTGC
AGCCAATATGGCTATTGTGACTCAGGACCTGATTACTGCACATCCGGCAC
TTGTGGTAAGTGA
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protein sequence of jgi.p|Trimin1|178972

>Trimin1|178972|e_gw1.181.1.1 ID=Trimin1|178972|e_gw1.181.1.1|Name=jgi.p|Trimin1|178972|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
GVCSDPKLCCSKYGYCGSTADYCAVVVIPNATCGNGNRGNRICFDSTHCC
SQYGYCDSGPDYCTSGTCGK*
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mRNA from alignment at Contig_181:104116..104328+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16063 ID=mRNA_16063|Name=jgi.p|Trimin1|178972|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_181:104116..104328+ (Tribonema minus UTEX_B_3156 )
GGTGTATGCTCAGACCCCAAGCTGTGCTGCAGCAAATATGGCTATTGCGG
CAGCACGGCGGATTACTGTGCGGTAGTGGTGATTCCTAATGCCACTTGTG
GCAATGGCAACAGGGGCAACAGAATTTGCTTCGACTCCACACACTGTTGC
AGCCAATATGGCTATTGTGACTCAGGACCTGATTACTGCACATCCGGCAC
TTGTGGTAAGTGA
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Coding sequence (CDS) from alignment at Contig_181:104116..104328+

>mRNA_16063 ID=mRNA_16063|Name=jgi.p|Trimin1|178972|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_181:104116..104328+ (Tribonema minus UTEX_B_3156 )
GGTGTATGCTCAGACCCCAAGCTGTGCTGCAGCAAATATGGCTATTGCGG
CAGCACGGCGGATTACTGTGCGGTAGTGGTGATTCCTAATGCCACTTGTG
GCAATGGCAACAGGGGCAACAGAATTTGCTTCGACTCCACACACTGTTGC
AGCCAATATGGCTATTGTGACTCAGGACCTGATTACTGCACATCCGGCAC
TTGTGGTAAGTGA
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