mRNA_1600 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|346661
Unique NamemRNA_1600
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|346661 vs. uniprot
Match: A0A835YV48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV48_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.400e-60
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    1 MRRHSRTSCVAVPAGERCCCVRPRRAAALRILLQRAAAFLLAAALQLERYIPYRCESYEAHGFAAVRFREWPALYARAVAAQQYWNAQTAVSADAC 288
            MRRHSRTSCVAVPAGERCCCVRPRRAAALRILLQRAAAFLLAAALQLERYIPYRCESYEAHGFAAVRFREWPALYARAVAAQQYWNAQTAVSADAC
Sbjct:    1 MRRHSRTSCVAVPAGERCCCVRPRRAAALRILLQRAAAFLLAAALQLERYIPYRCESYEAHGFAAVRFREWPALYARAVAAQQYWNAQTAVSADAC 96
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346661 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YV48_9STRA1.400e-60100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:665070..666227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|346661|estExt_Genemark1.C_Ctg_40063
Hectar predicted targeting categoryother localisation
TranscriptId346983
TrackFilteredModels1
ProteinId346661
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346661gene_1600Tribonema minus UTEX_B_3156 geneContig_4 665070..666227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1600_1exon_1600_1Tribonema minus UTEX_B_3156 exonContig_4 665070..665265 +
exon_1600_2exon_1600_2Tribonema minus UTEX_B_3156 exonContig_4 666133..666227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1600CDS_1600Tribonema minus UTEX_B_3156 CDSContig_4 665070..665265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346661Trimin1|346661|estExt_Genemark1.C_Ctg_40063Tribonema minus UTEX_B_3156 polypeptideContig_4 665070..666227 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1600 ID=mRNA_1600|Name=jgi.p|Trimin1|346661|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_4:665070..666227+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGGCACAGTAGGACAAGCTGTGTTGCGGTGCCCGCGGGTGAGCG
CTGCTGCTGCGTGCGGCCGCGCCGCGCCGCTGCGCTGCGCATTCTGCTAC
AGCGCGCCGCCGCCTTCCTGCTGGCGGCGGCGCTGCAGCTAGAGCGCTAC
ATTCCCTACCGCTGCGAGTCGTACGAAGCGCACGGCTTCGCTGCGGTGCG
CTTCCGGGAGTGGCCGGCGCTGTACGCGCGGGCCGTGGCAGCGCAACAAT
ATTGGAATGCCCAAACTGCGGTGAGCGCTGATGCGTGCTAA
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protein sequence of jgi.p|Trimin1|346661

>Trimin1|346661|estExt_Genemark1.C_Ctg_40063 ID=Trimin1|346661|estExt_Genemark1.C_Ctg_40063|Name=jgi.p|Trimin1|346661|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp
MRRHSRTSCVAVPAGERCCCVRPRRAAALRILLQRAAAFLLAAALQLERY
IPYRCESYEAHGFAAVRFREWPALYARAVAAQQYWNAQTAVSADAC*
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mRNA from alignment at Contig_4:665070..666227+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1600 ID=mRNA_1600|Name=jgi.p|Trimin1|346661|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1158bp|location=Sequence derived from alignment at Contig_4:665070..666227+ (Tribonema minus UTEX_B_3156 )
ATGCGGCGGCACAGTAGGACAAGCTGTGTTGCGGTGCCCGCGGGTGAGCG
CTGCTGCTGCGTGCGGCCGCGCCGCGCCGCTGCGCTGCGCATTCTGCTAC
AGCGCGCCGCCGCCTTCCTGCTGGCGGCGGCGCTGCAGCTAGAGCGCTAC
ATTCCCTACCGCTGCGAGTCGTACGAAGCGCACGGCTTCGCTGCGGGTAA
GCTGCTGTCGTCGGTTTCATGCTGCGGGGATGTGCGTGCAATGGCGGCGG
CCGTTGACTTTGCGCCCGCTGAGAGACACACTGTGCGTGGCCATTTGGGG
GGAACTAAACACAGGGGGGAGGTTAGGGCCGTTTGCACGGGGTACTGCAT
CTGTATGGTGGAGATCTGGGGGGGGGGGGGGGGCAGAGGGTAGAGGGGCT
TTCGTTGTCGTGGTCCGTGGGTCCAAGTGTGGTGGTGGGGGGGGGGGGCG
TGCTGCACTGCGGTGTGGCAGTGCTCGAAGGCAGCCCTGCTCAGCACCTG
TTTTTCTCTGTGTGACAGCTGCTCTGGTCTTGTCAAGAGTGATCATGCAG
ATCAATGCCACGTTGTTGTCTGTTGCTCACGCCGTGGTCCTGCACTCATG
CATTGAACTGCTGCGATGGGCGAGCATGTGCTGTAGATGCGCATGAGCGT
GTGATGTCTGCTTGACAGTCCCAACTGGTTCTCTATGCACAGCATGCTTG
ACGGTCCCGACTGGTTCTCTTTGCAACGCATGTACTTGCTCTGTGTCACG
AAGCGCTGAAGTGTATGGCTGCCCACGTGTGAAACGCGTGCACCGCTTGA
TCATGGCAAGATGATACTTTAATGATACTTTGTTACCATGAAGGCGGCGT
TCACGCAATTGTATGGTGTCCCATTCGTTGATGAGACCATATTCATGTGC
ACATGTCCATAGTTCAATATTTTAATAGAGCACATGTGTCGTGGCGGGCA
TCGGCACGTCCACGTTTTGGAGGTGCACACTGCACCGATGCACGCACATT
TCTGAATGTATGATCTACCATGGCACTGCCACGAGCTACGCGTGATGTGC
TGGTGCAGTGCAGTGCGCTTCCGGGAGTGGCCGGCGCTGTACGCGCGGGC
CGTGGCAGCGCAACAATATTGGAATGCCCAAACTGCGGTGAGCGCTGATG
CGTGCTAA
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Coding sequence (CDS) from alignment at Contig_4:665070..666227+

>mRNA_1600 ID=mRNA_1600|Name=jgi.p|Trimin1|346661|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=291bp|location=Sequence derived from alignment at Contig_4:665070..666227+ (Tribonema minus UTEX_B_3156 )
ATGCGGCGGCACAGTAGGACAAGCTGTGTTGCGGTGCCCGCGGGTGAGCG
CTGCTGCTGCGTGCGGCCGCGCCGCGCCGCTGCGCTGCGCATTCTGCTAC
AGCGCGCCGCCGCCTTCCTGCTGGCGGCGGCGCTGCAGCTAGAGCGCTAC
ATTCCCTACCGCTGCGAGTCGTACGAAGCGCACGGCTTCGCTGCGGTGCG
CTTCCGGGAGTGGCCGGCGCTGTACGCGCGGGCCGTGGCAGCGCAACAAT
ATTGGAATGCCCAAACTGCGGTGAGCGCTGATGCGTGCTAA
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