mRNA_16 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157545
Unique NamemRNA_16
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A835YW87_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW87_9STRA)

HSP 1 Score: 387 bits (994), Expect = 1.790e-133
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1 
Query:    1 MAWNGAPDQALAALHRLCSLGASIAFDYKYALQAYETPPHNWYGALKVLNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLISDRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSFNR 822
            MAWNGAPDQALAALHRLCSLGASIAFDYKYALQAYETPPHNWYGALKVLNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLISDRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSFNR
Sbjct:    1 MAWNGAPDQALAALHRLCSLGASIAFDYKYALQAYETPPHNWYGALKVLNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLISDRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSFNR 274
[Close]
BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A835Z487_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z487_9STRA)

HSP 1 Score: 183 bits (464), Expect = 5.960e-50
Identity = 115/289 (39.79%), Postives = 143/289 (49.48%), Query Frame = 1 
Query:    1 MAWNGAPDQALAALHRLCSLGASIAFDYKYALQAYETPPHNWYGALKVLNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLISD----------------RGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSFN 819
            +A  G  D+  AA+ RL  LGA  AFDY++ALQA+E P H W GAL++L+ M+    +WT RACSHAL    FAGRLN AL+L+  M++RGLSP PA+YL+LI++                RGGSKQA                   S+AINVCG AGDWA+A                                                                         WREM +L+LTPDTQSYGA INCYAVAGEP+KAE+VLAEM  S+  KP+A  +N
Sbjct:  186 LARGGGKDEVWAAVQRLSDLGALTAFDYEHALQAHEKPRH-WSGALRLLSHMDKNNIKWTVRACSHALLTLGFAGRLNAALQLLQKMHQRGLSPDPANYLQLIAECRRHSKKALVRDAGDSRGGSKQAXXXXXXXXXXXXXXXXXXXSAAINVCGKAGDWAAAVHIFQQMQQKVKRAKKIDLMLTAYRSMLTSGQRPNVVTLTCILDQAGAAGECSITEDI---------------WREMQRLKLTPDTQSYGACINCYAVAGEPDKAESVLAEMRQSSMTKPNAIVYN 458
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BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A835YWR0_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.360e-46
Identity = 81/136 (59.56%), Postives = 97/136 (71.32%), Query Frame = 1 
Query:   76 FDYKYALQAYETPPHNWYGALKVLNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLISD--------------RGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASA 441
            F+Y+YALQAYE   H W GAL++L+ M++   +WT RACSHAL AC FAGRLN A +LI  M++RG+SP   DYL+LI +              R GSKQA+EL Q MEQLGVMPNFKHY +AINVCG AGDWASA
Sbjct:    1 FNYEYALQAYEKSSH-WSGALRLLSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASA 135
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BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.190e-32
Identity = 121/289 (41.87%), Postives = 147/289 (50.87%), Query Frame = 1 
Query:    1 MAWNGAPDQALAALHRLCSLGASIAFDYKYALQAY--ETPPHNWYGALKVLNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLI------------SDRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-WREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSFNR 822
            MA+N  P  A+ AL +L   GA    DY+ A+ A+  E P      AL++L++ME +GF WT RA    L A    GRLN AL LI  M +R  SP   DYL LI             DRGGS+QA+E  Q M+  G +P+ +HY++A+ VC T G     XXXXXXXXXXXXXXXXXXXXXX                                                    W E    QL P+ ++Y A INCYA A +P+KAE VLAEM  SAAVKPDA SFNR
Sbjct:  137 MAYNHQPQHAMIALRQLQGSGAVTFHDYELAIHAHAKELP----LVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPDAISFNR 421
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BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.420e-30
Identity = 153/288 (53.12%), Postives = 187/288 (64.93%), Query Frame = 1 
Query:    1 MAWNGAPDQALAALHRLCSLGASIAFDYKYALQAYETPPHNWYGALKVLNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLISD----------------RGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSF 816
            MA +  P  A+ AL RL   GA+ + DY+ A+QAYE      + A+++L EM+ +GF WT RACS  L A   AGRLN A++LI  M E G+SP   D+L L ++                RGGSK AI+L Q M    V P+ K++++A+ VC    +  +A           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     W+EMH+LQL PD +SY + IN YA   EPEKAEAV AEM  +A VKP+A +F
Sbjct:  337 MACSHQPQHAMIALRRLQVSGAN-SHDYELAIQAYENQLP--FKAMELLREMKREGFGWTHRACSAVLLAFGKAGRLNAAVQLIKAMQEVGISPDKVDFLMLTTNCVRDERSEVVTPAGDSRGGSKMAIKLLQLMRDTRVAPDVKNFNAALKVCARERNPVNASIIFQQMATQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVQDIWKEMHRLQLEPDVRSYTSRINFYATTKEPEKAEAVFAEMCQAANVKPNAFTF 621
[Close]
BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.020e-29
Identity = 104/236 (44.07%), Postives = 124/236 (52.54%), Query Frame = 1 
Query:  154 MESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLIS-------------DRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-WREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSFN 819
            ME +G  WT RACS  L A   AGRLN AL+LI  M +RG+SP   DYL LI              DRGGS+QA+EL Q M+  G +P+ +HY++A+ VC T GD A A                                              XXXXXXXXXXXXXXXXXXXX        WR+M   QL PD +SY   I+CYA A +P++AE VLAEM  SAAVKP+A  FN
Sbjct:    1 MEREGLAWTHRACSTVLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLIGACARGKKNGTRAGDRGGSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAKAVNIFRSMRDQGIKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFN 236
[Close]
BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A836CK12_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK12_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.890e-24
Identity = 73/214 (34.11%), Postives = 91/214 (42.52%), Query Frame = 1 
Query:  220 AGRLNHALELIANMYERGLSPYPADYLRLI------------SDRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---WREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSF 816
            AGRL+ AL+LI  M +RG+SP   DYL LI             DRGGSKQA+EL Q M+  G +P+ +HY +A+ VC T GD A A                                                                            WREM   QL P++ SY AFINCYA A +P+KAE VL EM  SA +KP+A +F
Sbjct:    5 AGRLSAALQLIDEMKQRGISPNDVDYLMLIVACGHGKNVMRAGDRGGSKQALELLQRMQDTGPVPDIRHYDAAMKVCATEGDLAKAINIFESARDKAMGMKPNERSWGALLDAIGRAGQVAEMMAWYAEMLTSGGLQPNNVILNSMLAHAGTAGELGIAEGIWREMRDRQLEPNSYSYSAFINCYATAKQPDKAEGVLTEMVQSATIKPNAIAF 218
[Close]
BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A835ZB42_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB42_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.560e-24
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:  145 LNEMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYLRLIS------------DRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASA 441
            L+EME +GF WT RACS  L AC  AGRLN AL+LI  M +R  SP   DYL+LI             DRGGSKQA+E  Q M+  G +P+ +HY++A+ VC T GD A A
Sbjct:    6 LHEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKA 116
[Close]
BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A835YWP6_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.360e-24
Identity = 73/203 (35.96%), Postives = 87/203 (42.86%), Query Frame = 1 
Query:  259 MYERGLSPYPADYLRLIS--------------DRGGSKQAIELSQSMEQLGV-MPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPDASSFNR 822
            M ERG+ P P D+L+L+                RGGS QA+EL Q MEQ GV  P+FKHYS+AINVCG AGDW SA                                                                          REM +L++ P+T +Y A  NCYAV GEPEKAEAVLAEM  S   KP A ++NR
Sbjct:    1 MLERGIIPGPVDFLQLLGACSRNLRKLRAAGDTRGGSAQAMELLQLMEQPGVEKPDFKHYSAAINVCGKAGDWTSAVHIFEQMQLQGVHANISCWTALLDALGRAKKVDQMLATYREMLASGQEPDTVAFGTLLAHAGAAGESGIAEDIRREMQRLKIAPNTWTYCALTNCYAVTGEPEKAEAVLAEMRQSTMTKPSAIAYNR 203
[Close]
BLAST of jgi.p|Trimin1|157545 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA)

HSP 1 Score: 100 bits (249), Expect = 9.810e-21
Identity = 73/215 (33.95%), Postives = 89/215 (41.40%), Query Frame = 1 
Query:  196 HALHACAFAGRLNHALELIANMYERGLSPYPADYLRLI------------SDRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWREMHQLQLTPDTQSYGAFINCYAVAGEPEKAEAVLAEMGHSAAVKPD 804
            HA  +     RLN AL+LI  M +R +SP  ADYL LI             DRGGS+QA+EL Q M+  G +P+ +HYS+AI VC T GD A+A                                                                         WREM   QL P+  SY A INCYA A +P+KAE VL EM  SA +KPD
Sbjct:    3 HAAASVRQRRRLNAALQLIDEMQQRNISPSDADYLILIVACDRGKRRTRGGDRGGSEQALELLQRMQDKGPVPDLRHYSAAITVCVTEGDLANAVNTFQSMRDKGIKPNDWSWAALLDAFGRAGGRNDGMVWGDGYNRRTANCLHHDHSAESCWAAGELSVAEGI--WREMRDRQLEPNAYSYNASINCYATAKQPDKAEGVLTEMVQSATIKPD 215
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157545 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A835YW87_9STRA1.790e-133100.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z487_9STRA5.960e-5039.79PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YWR0_9STRA4.360e-4659.56PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835Z1B2_9STRA2.190e-3241.87PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CK07_9STRA5.420e-3053.13PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z5Z3_9STRA2.020e-2944.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK12_9STRA2.890e-2434.11PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835ZB42_9STRA3.560e-2450.45PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YWP6_9STRA9.360e-2435.96PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YW77_9STRA9.810e-2133.95PPR_long domain-containing protein n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:149963..151366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157545|e_gw1.3.312.1
Descriptionendonuclease activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Evalue0.000372
Seed ortholog227086.JGI_V11_89959
Hectar predicted targeting categoryother localisation
TranscriptId157867
TrackFilteredModels1
ProteinId157545
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157545gene_16Tribonema minus UTEX_B_3156 geneContig_3 149963..151366 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16_1exon_16_1Tribonema minus UTEX_B_3156 exonContig_3 149963..150276 +
exon_16_2exon_16_2Tribonema minus UTEX_B_3156 exonContig_3 150319..150475 +
exon_16_3exon_16_3Tribonema minus UTEX_B_3156 exonContig_3 151013..151366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16CDS_16Tribonema minus UTEX_B_3156 CDSContig_3 149963..150276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157545Trimin1|157545|e_gw1.3.312.1Tribonema minus UTEX_B_3156 polypeptideContig_3 149963..151366 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16 ID=mRNA_16|Name=jgi.p|Trimin1|157545|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=825bp|location=Sequence derived from alignment at Contig_3:149963..151366+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTGGAATGGTGCACCAGACCAGGCGTTGGCTGCTTTGCACCGATT
GTGCAGCTTGGGTGCTTCAATCGCTTTCGACTACAAGTACGCCCTCCAGG
CATACGAAACGCCCCCCCACAACTGGTATGGAGCCTTGAAGGTATTAAAC
GAAATGGAAAGCAAGGGGTTCCAATGGACGAGTCGTGCGTGCAGCCATGC
ACTGCATGCATGTGCTTTTGCAGGGCGGCTGAACCACGCGCTGGAGCTGA
TAGCTAACATGTATGAACGCGGCCTCAGCCCTTATCCTGCAGACTATCTC
CGGCTCATCAGCGACAGAGGTGGCAGCAAGCAGGCAATAGAGTTGTCGCA
GAGCATGGAGCAGTTAGGCGTGATGCCCAACTTCAAGCACTACAGCTCTG
CAATCAACGTGTGCGGGACAGCGGGGGATTGGGCTTCTGCCGTTCACATT
TTCCAGCAGATGCAGCACAAGGGGATGAGAGCACATACCCACTGCTGGAA
TGCCCTTCTGGACGCCCTCGGAAGGGCGAAACAGATTGATCTCATGCTGA
TAGCGTACAGAAACATGCTTACAAGCGGCCAGCGGCCAGACATCATCGCG
TTGAATTGCGTGTTGGGCCATGCTGGGGCGGCAGGAGAATGCGGTATTGT
GGATGACATCTGGAGGGAGATGCATCAACTCCAGCTGACGCCTGATACCC
AGAGTTATGGTGCCTTCATCAACTGTTATGCAGTGGCAGGAGAACCGGAA
AAGGCGGAGGCAGTGCTGGCAGAAATGGGCCACTCTGCTGCGGTCAAGCC
CGATGCCTCGTCATTCAACAGGTAA
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protein sequence of jgi.p|Trimin1|157545

>Trimin1|157545|e_gw1.3.312.1 ID=Trimin1|157545|e_gw1.3.312.1|Name=jgi.p|Trimin1|157545|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp
MAWNGAPDQALAALHRLCSLGASIAFDYKYALQAYETPPHNWYGALKVLN
EMESKGFQWTSRACSHALHACAFAGRLNHALELIANMYERGLSPYPADYL
RLISDRGGSKQAIELSQSMEQLGVMPNFKHYSSAINVCGTAGDWASAVHI
FQQMQHKGMRAHTHCWNALLDALGRAKQIDLMLIAYRNMLTSGQRPDIIA
LNCVLGHAGAAGECGIVDDIWREMHQLQLTPDTQSYGAFINCYAVAGEPE
KAEAVLAEMGHSAAVKPDASSFNR*
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mRNA from alignment at Contig_3:149963..151366+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16 ID=mRNA_16|Name=jgi.p|Trimin1|157545|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1404bp|location=Sequence derived from alignment at Contig_3:149963..151366+ (Tribonema minus UTEX_B_3156 )
ATGGCTTGGAATGGTGCACCAGACCAGGCGTTGGCTGCTTTGCACCGATT
GTGCAGCTTGGGTGCTTCAATCGCTTTCGACTACAAGTACGCCCTCCAGG
CATACGAAACGCCCCCCCACAACTGGTATGGAGCCTTGAAGGTATTAAAC
GAAATGGAAAGCAAGGGGTTCCAATGGACGAGTCGTGCGTGCAGCCATGC
ACTGCATGCATGTGCTTTTGCAGGGCGGCTGAACCACGCGCTGGAGCTGA
TAGCTAACATGTATGAACGCGGCCTCAGCCCTTATCCTGCAGACTATCTC
CGGCTCATCAGCGAGTGTCATCGAGACCAAAAATAGATGTGCGATGCTGG
GGACAGCAGAGGTGGCAGCAAGCAGGCAATAGAGTTGTCGCAGAGCATGG
AGCAGTTAGGCGTGATGCCCAACTTCAAGCACTACAGCTCTGCAATCAAC
GTGTGCGGGACAGCGGGGGATTGGGCTTCTGCCGTTCACATTTTCCAGCA
GATGCAGCACAAGGTAAGAGGTATCATGCACGACCTACTTGGTCTCTACA
TGCCAATATGGATGTTCTGGCCCTGGCAGTGTCACGTTGCATGCGCACAC
TAGACCTCGAGGCTCCCACTGTGACACGCTGCAGCAATTGCCTTAAGGAT
ATATGTCGACGTATCCGTTGATGATCACAATCATAATGACTGCAGCACCT
AGGTGCCAGACGGGGACCCATGTTCTACTTTTGCAAGTCTGCAAACGGCA
TTGTGTGTCACATCTTTCACATGGCTTGAGCATTCCTTGGAGCTTTCTTT
GCAGCCTGAGTGCTACCGTAACTGTCAGTGATATTGTACTCGAGCAAAGG
AAACGCATGCATCATGATTTGTACGATGCAATCACATATTGCATAAGCGG
CGTCAGCCAGTGTTCAAACAAGTCAACGACACCATTGTATGTGCACAACC
CAACTTTTTGCCAATCAGGAGGCTTCATATTATTGGCAACATGTTGCTGC
GCAATTGACAAAGGCTGTCTTGTTGCTGGCATGCTGAATGCGTGTTGCAG
GGGATGAGAGCACATACCCACTGCTGGAATGCCCTTCTGGACGCCCTCGG
AAGGGCGAAACAGATTGATCTCATGCTGATAGCGTACAGAAACATGCTTA
CAAGCGGCCAGCGGCCAGACATCATCGCGTTGAATTGCGTGTTGGGCCAT
GCTGGGGCGGCAGGAGAATGCGGTATTGTGGATGACATCTGGAGGGAGAT
GCATCAACTCCAGCTGACGCCTGATACCCAGAGTTATGGTGCCTTCATCA
ACTGTTATGCAGTGGCAGGAGAACCGGAAAAGGCGGAGGCAGTGCTGGCA
GAAATGGGCCACTCTGCTGCGGTCAAGCCCGATGCCTCGTCATTCAACAG
GTAA
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Coding sequence (CDS) from alignment at Contig_3:149963..151366+

>mRNA_16 ID=mRNA_16|Name=jgi.p|Trimin1|157545|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=825bp|location=Sequence derived from alignment at Contig_3:149963..151366+ (Tribonema minus UTEX_B_3156 )
ATGGCTTGGAATGGTGCACCAGACCAGGCGTTGGCTGCTTTGCACCGATT
GTGCAGCTTGGGTGCTTCAATCGCTTTCGACTACAAGTACGCCCTCCAGG
CATACGAAACGCCCCCCCACAACTGGTATGGAGCCTTGAAGGTATTAAAC
GAAATGGAAAGCAAGGGGTTCCAATGGACGAGTCGTGCGTGCAGCCATGC
ACTGCATGCATGTGCTTTTGCAGGGCGGCTGAACCACGCGCTGGAGCTGA
TAGCTAACATGTATGAACGCGGCCTCAGCCCTTATCCTGCAGACTATCTC
CGGCTCATCAGCGACAGAGGTGGCAGCAAGCAGGCAATAGAGTTGTCGCA
GAGCATGGAGCAGTTAGGCGTGATGCCCAACTTCAAGCACTACAGCTCTG
CAATCAACGTGTGCGGGACAGCGGGGGATTGGGCTTCTGCCGTTCACATT
TTCCAGCAGATGCAGCACAAGGGGATGAGAGCACATACCCACTGCTGGAA
TGCCCTTCTGGACGCCCTCGGAAGGGCGAAACAGATTGATCTCATGCTGA
TAGCGTACAGAAACATGCTTACAAGCGGCCAGCGGCCAGACATCATCGCG
TTGAATTGCGTGTTGGGCCATGCTGGGGCGGCAGGAGAATGCGGTATTGT
GGATGACATCTGGAGGGAGATGCATCAACTCCAGCTGACGCCTGATACCC
AGAGTTATGGTGCCTTCATCAACTGTTATGCAGTGGCAGGAGAACCGGAA
AAGGCGGAGGCAGTGCTGGCAGAAATGGGCCACTCTGCTGCGGTCAAGCC
CGATGCCTCGTCATTCAACAGGTAA
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