mRNA_1598 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157955
Unique NamemRNA_1598
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A836CET2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET2_9STRA)

HSP 1 Score: 531 bits (1369), Expect = 5.870e-190
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1 
Query:    1 MQAADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQKVRHLKLQFSGWQCLPSRTTTWALSRSSXXXXXXXXXXXXXXXXXXRERRIT 879
            MQAADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQKVRHLKLQFSGWQCLPSRTTTWALSRSSXXXXXXXXXXXXXXXXXXRERRIT
Sbjct:    1 MQAADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQKVRHLKLQFSGWQCLPSRTTTWALSRSSXXXXXXXXXXXXXXXXXXRERRIT 293
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: D8LLY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY8_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 9.120e-130
Identity = 193/241 (80.08%), Postives = 211/241 (87.55%), Query Frame = 1 
Query:    7 AADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQKV 729
            A DS ELLALQRIDETCMQLQQQG+YL+ALECMERGLVLRQHFFGSDS+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVT NNLACYYRR+GKLH+ALQYL +ALKIEA++GSRV+ PADTHLNTCAVLSQ+GRHQGAL+HAQSALILLQEELFGGG  A      G+G          PRADR+AVLAIAYHNMGVEQEFLK+F+HSLQSYRKGVEV  ++
Sbjct:    2 ATDSVELLALQRIDETCMQLQQQGDYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGG--ATVGDAGGEG------GDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVTARL 234
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A7S2RTK0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTK0_9STRA)

HSP 1 Score: 352 bits (903), Expect = 1.020e-118
Identity = 185/237 (78.06%), Postives = 205/237 (86.50%), Query Frame = 1 
Query:   16 SAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 726
            +AELLALQRIDETC +LQQQGNYLEALECMERGLVLRQHFFG++SDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERD  G+AVT NNLACYYRRQGKLH+ALQYLQ ALKIEA+L +RV  PADT+LNTCAVLSQLGRHQ AL+HAQ ALILLQEEL    SR +     G         + +P+ADR+AVLAI+YHN+GVE EFLK+FD SLQSYRKGVEVA++
Sbjct:   16 NAELLALQRIDETCRKLQQQGNYLEALECMERGLVLRQHFFGAESDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHSALQYLQNALKIEAKL-ARVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEEL----SRVVGPMADG---------KEAPKADRIAVLAISYHNVGVEYEFLKKFDQSLQSYRKGVEVAER 238
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A7S2CPG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPG4_9STRA)

HSP 1 Score: 350 bits (897), Expect = 5.690e-118
Identity = 185/238 (77.73%), Postives = 203/238 (85.29%), Query Frame = 1 
Query:   13 DSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 726
            ++AELLALQRIDETC QLQ QGNYLEALECMERGLVLRQHFFG+DSDEVWRACK VGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERD  G+AVT NNLACYYRRQGKLHAALQYLQ+ALKIE +L  +V  PADT+LNTCAVLSQLGRHQ AL+HAQ ALILLQEEL    SR L     G+          +P+ADR+AVLAIAYHN+GVE EFLK+FD SLQSYRKGVEV+++
Sbjct:    7 NNAELLALQRIDETCKQLQTQGNYLEALECMERGLVLRQHFFGADSDEVWRACKVVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDNAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIENKL-DQVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEEL----SRVLGPMADGN---------EAPKADRIAVLAIAYHNVGVEYEFLKKFDQSLQSYRKGVEVSER 230
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A7S3YLC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLC4_HETAK)

HSP 1 Score: 350 bits (898), Expect = 8.790e-118
Identity = 182/238 (76.47%), Postives = 203/238 (85.29%), Query Frame = 1 
Query:   13 DSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 726
            D+AELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFG++S+EVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERD  GKAVT NNLACYYRRQGKLH+ALQYLQ+ALKIE+++   V+ PADTHLNTCAVLSQLGRH  AL+HAQS++ILLQEELF            GDG+         PR DRVAVL IAYHN+GVEQEFLK+++ S+ SYRKGVEV ++
Sbjct:   63 DNAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGAESEEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDQKGKAVTYNNLACYYRRQGKLHSALQYLQKALKIESKMKD-VENPADTHLNTCAVLSQLGRHTSALEHAQSSMILLQEELF-----------QGDGD---------PRPDRVAVLGIAYHNIGVEQEFLKKYEQSIASYRKGVEVVER 279
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A7S4A6K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K0_9STRA)

HSP 1 Score: 345 bits (886), Expect = 2.320e-116
Identity = 186/238 (78.15%), Postives = 198/238 (83.19%), Query Frame = 1 
Query:   13 DSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 726
            D+AELLALQRIDETC   QQ G YLEALECMERGLVLRQHFFG+ SDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERD  G+AVT NNLACYYRRQGKLHAALQYLQ+ALKIE RL S V  PADT+LN CAVLSQLGRHQ AL+HAQ ALILLQEEL    S  L S  AG            P+ADRVAVLAIAYHN+GVEQEFLK+ + SLQSYRKGVEVA++
Sbjct:   15 DNAELLALQRIDETCTNFQQNGQYLEALECMERGLVLRQHFFGAGSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIEGRLES-VDNPADTYLNACAVLSQLGRHQSALEHAQQALILLQEEL----SSVLGSDNAGP-----------PKADRVAVLAIAYHNVGVEQEFLKKHNQSLQSYRKGVEVAER 236
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A7S1XJL3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJL3_9STRA)

HSP 1 Score: 341 bits (874), Expect = 5.630e-112
Identity = 179/238 (75.21%), Postives = 204/238 (85.71%), Query Frame = 1 
Query:   13 DSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 726
            ++AELLALQRIDETC+QLQQ GNYLEALECMERGLVLRQHFFGSDS+EVW AC+TVGEMCNLLAMTYLQQ+D+AMVLELLKKAEILTERD  G+AVT NN ACYYRRQGKLHAALQ+LQ+AL+IE+RL   V   ADT+LNTCAVLSQLGRHQ AL+HAQ+ALILLQEELF G         AG G    GL+  +P  DR+AVLAIAYHN+GVEQEFLK+F+ SL SYRKG++VA++
Sbjct:  114 ETAELLALQRIDETCVQLQQSGNYLEALECMERGLVLRQHFFGSDSNEVWSACRTVGEMCNLLAMTYLQQQDYAMVLELLKKAEILTERDDKGRAVTFNNFACYYRRQGKLHAALQFLQKALRIESRLVD-VPNAADTYLNTCAVLSQLGRHQSALEHAQNALILLQEELFHG-----IEGGAGMGGEEAGLAPPNPPKDRIAVLAIAYHNIGVEQEFLKKFEMSLTSYRKGIQVAER 345
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A7S3HH21_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH21_9STRA)

HSP 1 Score: 335 bits (858), Expect = 7.630e-112
Identity = 175/237 (73.84%), Postives = 198/237 (83.54%), Query Frame = 1 
Query:   16 SAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 726
            +AE+LALQR+DET  QLQ+QGNYLEALECMERGLVLRQHFFG+DS EVW+ACKTVGEMCNLLAMTYLQQEDF MVLELLKKAEILTE+D  G+A T NNLACYYRRQGKLHAALQYLQ+ALKIE+ L + VQ PADTH+N CAVLSQLGRHQ ALDHAQ+A+ILLQEEL        P    G          A P+ADR+AVLAIAYHN+GVEQEFLKR++ S+ SY+KGVEVA++
Sbjct:    4 NAEVLALQRLDETSAQLQKQGNYLEALECMERGLVLRQHFFGADSPEVWKACKTVGEMCNLLAMTYLQQEDFNMVLELLKKAEILTEKDEAGRAATFNNLACYYRRQGKLHAALQYLQKALKIESGL-TNVQNPADTHINACAVLSQLGRHQTALDHAQNAIILLQEELLS------PPGVVG---------AAPPQADRIAVLAIAYHNIGVEQEFLKRYEQSVLSYKKGVEVAER 224
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A2R5G2B1_9STRA (Clustered mitochondria protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2B1_9STRA)

HSP 1 Score: 322 bits (824), Expect = 3.700e-98
Identity = 171/239 (71.55%), Postives = 193/239 (80.75%), Query Frame = 1 
Query:    7 AADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQ 723
            A  +AELLAL RIDET  +LQQQG YLEALECMERGLVLRQHFFG  SDEVW ACKTVG+MCNLLAMTYLQQE+F+MVLELLKKAEILTERD  G+AVT NNLACY+RR GKLHAALQYLQ+ALK+E+RL   V   ADTHLN CAVLSQLGRH GAL+HAQ+ALI LQEELF G   A   S +         S A    DR+AVLAIAYHN+GVEQEFLKRF+ ++ SYRKGV++++
Sbjct:  440 AEANAELLALHRIDETSTRLQQQGKYLEALECMERGLVLRQHFFGPSSDEVWAACKTVGQMCNLLAMTYLQQEEFSMVLELLKKAEILTERDEHGRAVTYNNLACYFRRTGKLHAALQYLQKALKVESRL-ENVTNRADTHLNLCAVLSQLGRHAGALEHAQAALIQLQEELFPGALSASAKSSS---------SAALASTDRIAVLAIAYHNIGVEQEFLKRFEMAIDSYRKGVDISE 668
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BLAST of jgi.p|Trimin1|157955 vs. uniprot
Match: A0A8K1C3P2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3P2_PYTOL)

HSP 1 Score: 298 bits (762), Expect = 9.490e-98
Identity = 162/239 (67.78%), Postives = 187/239 (78.24%), Query Frame = 1 
Query:   22 ELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQKVRHL 738
            EL+AL+R+D  C QLQQ+G Y EALECME+GLVLRQHFFG+D +EVW ACKTVGEMCNLLAMTYLQQE+F++VLELLKKAEILTE+ A G+AVTLNNLACYYRRQG LH AL YL  ALKIE+RL + +   ADTHLN CAVLSQLG+HQ AL HAQSALILL EEL  GG    P++     +        S + DRVAVL IAYHN+GVE EFLK +D S+QSY+KGVE+    RHL
Sbjct:   36 ELVALERLDHKCTQLQQEGKYTEALECMEKGLVLRQHFFGADCEEVWTACKTVGEMCNLLAMTYLQQEEFSVVLELLKKAEILTEKHAPGRAVTLNNLACYYRRQGNLHKALTYLTEALKIESRLDN-IPNKADTHLNMCAVLSQLGKHQSALQHAQSALILLHEELQLGG----PNNQNTQND-----RIESAKLDRVAVLGIAYHNVGVEHEFLKCWDLSVQSYKKGVEITS--RHL 262
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157955 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CET2_9STRA5.870e-190100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LLY8_ECTSI9.120e-13080.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RTK0_9STRA1.020e-11878.06Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2CPG4_9STRA5.690e-11877.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3YLC4_HETAK8.790e-11876.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4A6K0_9STRA2.320e-11678.15Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XJL3_9STRA5.630e-11275.21Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HH21_9STRA7.630e-11273.84Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2R5G2B1_9STRA3.700e-9871.55Clustered mitochondria protein-like n=1 Tax=Hondae... [more]
A0A8K1C3P2_PYTOL9.490e-9867.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:634739..639096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157955|e_gw1.4.380.1
DescriptionTetratricopeptide repeat
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28ZWJ@1|root,2R6RA@2759|Eukaryota
Evalue1.5e-130
Seed ortholog2880.D8LLY8
Hectar predicted targeting categoryother localisation
TranscriptId158277
TrackFilteredModels1
ProteinId157955
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157955gene_1598Tribonema minus UTEX_B_3156 geneContig_4 634739..639096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157955Trimin1|157955|e_gw1.4.380.1Tribonema minus UTEX_B_3156 polypeptideContig_4 634739..639096 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1598_4exon_1598_4Tribonema minus UTEX_B_3156 exonContig_4 634739..635107 -
exon_1598_3exon_1598_3Tribonema minus UTEX_B_3156 exonContig_4 636486..636593 -
exon_1598_2exon_1598_2Tribonema minus UTEX_B_3156 exonContig_4 637632..637880 -
exon_1598_1exon_1598_1Tribonema minus UTEX_B_3156 exonContig_4 638941..639096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1598CDS_1598Tribonema minus UTEX_B_3156 CDSContig_4 638941..639096 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1598 ID=mRNA_1598|Name=jgi.p|Trimin1|157955|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=882bp|location=Sequence derived from alignment at Contig_4:634739..639096- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCTGCGGACAGCGCAGAGCTGCTGGCTCTGCAGAGGATAGATGA
GACATGCATGCAGCTGCAGCAGCAGGGCAACTATCTGGAGGCTCTGGAGT
GCATGGAGAGGGGTCTCGTCCTCAGGCAGCACTTCTTTGGCAGCGACAGC
GACGAGGTGTGGCGCGCGTGCAAGACGGTAGGCGAGATGTGCAACCTGCT
CGCCATGACATACCTCCAGCAGGAGGACTTTGCGATGGTGCTGGAGCTTC
TCAAGAAGGCGGAGATTCTGACGGAGCGCGACGCCGTTGGCAAGGCGGTG
ACGCTCAACAACCTCGCGTGCTACTACCGGCGCCAGGGCAAGCTGCACGC
GGCGCTGCAGTACCTGCAGCGCGCCCTCAAGATTGAGGCGCGCCTGGGCT
CTAGGGTGCAGACGCCTGCGGACACGCACCTCAACACATGCGCAGTGCTC
AGCCAGCTGGGGCGCCACCAGGGGGCGCTGGATCACGCGCAGAGCGCGCT
CATACTGCTGCAGGAGGAGCTGTTTGGCGGCGGAAGCAGAGCATTACCAT
CCTCGTGCGCCGGTGACGGAGAGCTGGGTCTGGGGCTGAGCCAGGCGTCG
CCGCGCGCCGATAGGGTGGCAGTGCTCGCCATCGCATACCACAACATGGG
CGTCGAGCAGGAGTTTTTGAAGCGCTTCGACCACAGCCTGCAGTCGTACC
GCAAGGGCGTGGAGGTGGCGCAGAAGGTGCGTCACTTGAAGTTGCAGTTT
TCAGGGTGGCAGTGCTTGCCATCGCGTACCACAACATGGGCGTTGAGCAG
GAGTTCCTCAAGCGTTTCAACCACAGCCTGCAGTTGTACCGCAAGTGCGT
GGAGGTGGCGCAGAGAGAGGCGCATCACTTGA
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protein sequence of jgi.p|Trimin1|157955

>Trimin1|157955|e_gw1.4.380.1 ID=Trimin1|157955|e_gw1.4.380.1|Name=jgi.p|Trimin1|157955|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp
MQAADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDS
DEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAV
TLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVL
SQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQAS
PRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQKVRHLKLQF
SGWQCLPSRTTTWALSRSSSSVSTTACSCTASAWRWRRERRIT*
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mRNA from alignment at Contig_4:634739..639096-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1598 ID=mRNA_1598|Name=jgi.p|Trimin1|157955|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4358bp|location=Sequence derived from alignment at Contig_4:634739..639096- (Tribonema minus UTEX_B_3156 )
ATGCAGGCTGCGGACAGCGCAGAGCTGCTGGCTCTGCAGAGGATAGATGA
GACATGCATGCAGCTGCAGCAGCAGGGCAACTATCTGGAGGCTCTGGAGT
GCATGGAGAGGGGTCTCGTCCTCAGGCAGCACTTCTTTGGCAGCGACAGC
GACGAGGTGCGGCAGCGCCTTCAGTGACTACGCCGCTATTGATTTGTCTC
TTGTGCAGTAGCAGCAGCGACCACATCATGGTATGCCGTGTCGCAACTCC
ACACTTGTAATAAAGACAGGGGCATGCCGTTCGACGATAGTGCCAAGGCA
TATCACTTACCTGGATGGCACATGTAAACAGCCTGCCTGCAAGACACCTC
ACTCTGCCTTCTTAAGTAAACACTTCTTGTTTTTGCCTGCATAGCCCGAT
ATTTTCGTCATACATGTGTGTAAGCAAATAAGAAGACATCGACATGAGTC
CAATTTTAGGGTTTAACAGCAACTGGCTATTCGTGCATGCAATGCGAGGA
CAGACAACTGAGTTGGCTATTGGGAACTCCTGATCACTCACACGATGCCG
CCACAAGGGCACAATTAGCTGACAGTATAGCAGGAGATGCTGATTTGGCA
AGCTGTGCGTACTTAACGCGCTGATGTTCATTGTGCTGGTCACGACAGAC
GCAGCAGTGCAGCTGCCTGCAGACGTGGGAGTACGGGGGGGTGATGGTGT
GCAGTGTGGTACGTGAGCTCGATGAGATTCATACCGCTTTTTGGTGACAT
GCACAACTTCAACTTACTCCTGGTGACGCACCTGCGGCAGGACAAATTTT
GCCTAGCTGCGGCAGAAGAAATTCGGCATAAGGGGGGGGCTTGATGTATA
CACGTAGCACTCTTGAATGTTGCTTACATGAATGCCTCAGTCAAAGACAG
CTGTGACACGTATCTCGATGACTACCATGACTGCACACGCGCTGCGGTCA
CGTTTTGCTGAAGCCCCCGCGCCGCTCCAACCGCCGCTGTGCGACCCCCC
CCGCAGGTGTGGCGCGCGTGCAAGACGGTTGGCGAGTTGTGCAACCTGCT
CGCCATGATGTACCTCCTGCTGCTCTTGAATTTTGCTTACATGAATGTTT
CAAACAAAGACAGCTGTGACACACATCCCGATGACCATCATAATCGCACG
CACTGCGGTCACGTTTTGCTGAAGCCCCCGCGCCGCTCCAACCGCCGCTG
CGTGACCCCCCCGCAGGTGTGGCGCGCGTGCAAGACGGTAGGCGAGATGT
GCAACCTGCTCGCCATGACATACCTCCAGCAGGAGGACTTTGCGATGGTG
CTGGAGCTTCTCAAGAAGGCGGAGATTCTGACGGAGCGCGACGCCGTTGG
CAAGGCGGTGACGCTCAACAACCTCGCGTGCTACTACCGGCGCCAGGGCA
AGCTGCACGCGGCGCTGCAGTACCTGCAGCGCGCCCTCAAGATTGAGGCG
CGCCTGGGCTCTAGGGTGAGCAATGTGGGGGCAGTTGCAGATGTTAATGC
ACTGTGAGCCATTTGCAACCTGCTGCAGGTATGAATAACGTCATGCGCAC
ACGCTCGCTGGGCACTGCTGCAGTAGCTGGGCACTGCTGTAGCAGTCGCA
GTCGCAGTGCCTGCAGCGCGCGCTTAAAATCGAGGCGCGCCTGGGCTCCA
GGGCGAGCCATGTGGGAGCGCCTGCAGAGACTGATTTCACGTAACACACA
CGCTGAGGACTGCTGCAGTAGCACTGGCGGTTGGAGTGCCTGCAGCGCGC
ACTCAAGACAGACAGAGGCGCGTCTGGGCTCCAGGGTACGGCGGCGGCCG
CTTCGTGAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGCCTAACCCTA
ACCCTAAGTCGGTCACAACGAGCAGGGCGAGTTCACAGCCAGTAGTCAGT
CACAATGAGCAGGGCGAGCTTCACAGCGCGCAGACAGTGCACGCCGTGAA
GCGATGGTGTCGGCGTGGCGGTGATGAGCAGCAGCCTGGCACGCTGCTAC
GCGGCGCCTCAAGGCAATCACGATGGTGGCTGCGCTTGGTTCCAGTAACT
GCTGAGCGGCGGCGTCGTGCTCCTTCAGGCGCAGGCTGCAGGGCAGCTGC
TTCAGCGGAGGAAAGTTGTGTGAGCTTCACCAGCGTCTGTCACACTGGGG
CAGTTGGTGCGCGGTCAGCGCCGGGCCCCGCACGGGGCGCCCCCTCATGT
GTAACTGCCGTACCCGTCAGGCGTGCAACCAAATGGCATTGAGCATGCAA
CTGCCATATGCGTTGCCACACATGCACACTGTGCCATCCTGAACACGCGC
ATACATATGGGTGCTGCTGCGTGTCGCAGGTCCAGACGCCTGCGGACACC
CACCTCAACACGTGCAAGTGTGACTGCCGTAATGTTCAAGCGCGCAAACA
AGATGGCAACGAGCATGTAACTGCCATATGCTTTGACGCATACGCACTTT
GCCGTCCTAAACAGACCTGTGACTTTGGGTGCTGCTGCCGCTGAATATCG
CAGGTGCAGACGCCTGCGGACACGCACCTCAACACATGCGCAGTGCTCAG
CCAGCTGGGGCGCCACCAGGGGGCGCTGGATCACGCGCAGAGCGCGCTCA
TACTGCTGCAGGTGTGTATGCTGAAGAAGACAGTTATTGTCAATGTCAAA
AGTAGCTTTGTTGAGGTGAAGGCCCTTACTACTGCAGGTGCGTATGCTTG
TGAATACCGGCAACATTGATGTCAAAAGTTGCTTTGGTGTAGTGAAGGGC
TCATACTGCTGCAGGTGCGTGTGCTGAAGAATGCCGTTGACATCCATGTC
AAAAGTAACTTGCGCATAGTAAATGAACCAACAGCCTGATAGATCAGTAG
AAACTCAGGGGGCGCTGGACCATGCGCAGAGCGCTCTCATTCTGCTTCAG
GTGTGCATGCTGCTTGTTTGCTACAAGTGGCTCAGTAGAAGTAGAATCAG
CTGCGGGTGCGGGTGATGCTCATCTGCTGTTCGTAGATCAGAGTCTCGGG
GACAGCGGCGCGTTGAAGGTGCGATGGCCAGATGACGGCCACATGGGGGG
GGGGGGGGGGGGGGGGGGCGTTGTTGCACAGTGCACAGAAGGCGATGCAA
TCTCTGAAAGTTTTTGGGAAACACCACGGGGTTACCTGCGCGTACTCCAG
AAACCTTTGCTGAACTTGATTTTTTGAAAGGTATACCATTCATATAAAAA
AACGAATGATGCATGTCTTTAAAACAATAAACTTGAGAAGCAGGAAATGG
TGAATTGGAATTAGATTCATACTGTCTGCTTAGCGTAATGCTGTTAAAAC
CTCAATGCTAGAATCACAAACATTTCCAACTGACACGCCGCGACCGCGCC
CGTGCCCGCCGCCCGTGGCCAGGAGGAGCTGTCTGGCGGCAGCAGCACAC
CATCATTCACACCATATTCTTTGATGCCTGCTGAATCACCCTGAGAAGCA
GGGAATGGCAGATGTGGCTTTTCGAATCAAAATCATTTCGTCTGCTTTCC
GTAACGTTTTGATTGAATTGAGCAGATAGGCGACACTGCTGGCTACCTGG
CTGGTGTTGCCGTGTCTACGAGAGCTTGGCCTTGTGCGGCCTAGCAGAAT
GTGAATGGCTGCCACACGCTCGCGTCCCCCTTTCTGTGCCCCTTGCTGGT
TCCTGGTTTTTGGCCCCAATTTTTCCCAAAATTGCCGAAAACTCTGAGAT
TACAAAAGTGAAGCCACAAACAGTTCAAACAGACACACCACGACCTCGCA
TATATGTGATCAGGAGGAGCTGCTTGGCGGCGGCAGCGGAGCATCACCAT
CATCACTATCATTTTCACAGCACGTACTTCTTCAAAGCATGCTCAAACAA
CTTGAAAAGCAGAGAATGGTGAATGTGGCGCTCTGAATAGAAGTAATATT
CATTTGCTCACTGCAATGTTGTCCGGACTTCAATTGAAGTTAAAGCTGCC
ACACCGCGACCTCGCGCGCGTGCCCGCCACCCTGGCCAGGAGGAGCTGTT
TGGCGGCGGAAGCAGAGCATTACCATCCTCGTGCGCCGGTGACGGAGAGC
TGGGTCTGGGGCTGAGCCAGGCGTCGCCGCGCGCCGATAGGGTGGCAGTG
CTCGCCATCGCATACCACAACATGGGCGTCGAGCAGGAGTTTTTGAAGCG
CTTCGACCACAGCCTGCAGTCGTACCGCAAGGGCGTGGAGGTGGCGCAGA
AGGTGCGTCACTTGAAGTTGCAGTTTTCAGGGTGGCAGTGCTTGCCATCG
CGTACCACAACATGGGCGTTGAGCAGGAGTTCCTCAAGCGTTTCAACCAC
AGCCTGCAGTTGTACCGCAAGTGCGTGGAGGTGGCGCAGAGAGAGGCGCA
TCACTTGA
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Coding sequence (CDS) from alignment at Contig_4:634739..639096-

>mRNA_1598 ID=mRNA_1598|Name=jgi.p|Trimin1|157955|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_4:634739..639096- (Tribonema minus UTEX_B_3156 )
ATGCAGGCTGCGGACAGCGCAGAGCTGCTGGCTCTGCAGAGGATAGATGA
GACATGCATGCAGCTGCAGCAGCAGGGCAACTATCTGGAGGCTCTGGAGT
GCATGGAGAGGGGTCTCGTCCTCAGGCAGCACTTCTTTGGCAGCGACAGC
GACGAGGTGTGGCGCGCGTGCAAGACGGTAGGCGAGATGTGCAACCTGCT
CGCCATGACATACCTCCAGCAGGAGGACTTTGCGATGGTGCTGGAGCTTC
TCAAGAAGGCGGAGATTCTGACGGAGCGCGACGCCGTTGGCAAGGCGGTG
ACGCTCAACAACCTCGCGTGCTACTACCGGCGCCAGGGCAAGCTGCACGC
GGCGCTGCAGTACCTGCAGCGCGCCCTCAAGATTGAGGCGCGCCTGGGCT
CTAGGGTGCAGACGCCTGCGGACACGCACCTCAACACATGCGCAGTGCTC
AGCCAGCTGGGGCGCCACCAGGGGGCGCTGGATCACGCGCAGAGCGCGCT
CATACTGCTGCAGGAGGAGCTGTTTGGCGGCGGAAGCAGAGCATTACCAT
CCTCGTGCGCCGGTGACGGAGAGCTGGGTCTGGGGCTGAGCCAGGCGTCG
CCGCGCGCCGATAGGGTGGCAGTGCTCGCCATCGCATACCACAACATGGG
CGTCGAGCAGGAGTTTTTGAAGCGCTTCGACCACAGCCTGCAGTCGTACC
GCAAGGGCGTGGAGGTGGCGCAGAAGGTGCGTCACTTGAAGTTGCAGTTT
TCAGGGTGGCAGTGCTTGCCATCGCGTACCACAACATGGGCGTTGAGCAG
GAGTTCCTCAAGCGTTTCAACCACAGCCTGCAGTTGTACCGCAAGTGCGT
GGAGGTGGCGCAGAGAGAGGCGCATCACTTGA
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