mRNA_15903 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153749
Unique NamemRNA_15903
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|153749 vs. uniprot
Match: A0A836CJA2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.340e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 MVKTSYRLCLAEGCLKSASFGEAGGRPSRCRAHKAPGIGGRTQQAVRPRRLQQACLLRRG 180
            MVKTSYRLCLAEGCLKSASFGEAGGRPSRCRAHKAPGIGGRTQQAVRPRRLQQACLLRRG
Sbjct:    1 MVKTSYRLCLAEGCLKSASFGEAGGRPSRCRAHKAPGIGGRTQQAVRPRRLQQACLLRRG 60
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153749 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJA2_9STRA1.340e-32100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_210contigContig_210:23465..23935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153749|gw1.210.63.1
Hectar predicted targeting categoryother localisation
TranscriptId154071
TrackFilteredModels1
ProteinId153749
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153749gene_15903Tribonema minus UTEX_B_3156 geneContig_210 23465..23935 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15903_1exon_15903_1Tribonema minus UTEX_B_3156 exonContig_210 23465..23935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15903CDS_15903Tribonema minus UTEX_B_3156 CDSContig_210 23465..23935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153749Trimin1|153749|gw1.210.63.1Tribonema minus UTEX_B_3156 polypeptideContig_210 23465..23935 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15903 ID=mRNA_15903|Name=jgi.p|Trimin1|153749|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_210:23465..23935+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAGACCTCGTACAGACTGTGCCTGGCTGAAGGCTGCCTCAAGAG
CGCTAGCTTCGGCGAGGCAGGGGGGCGTCCATCACGCTGCAGGGCCCACA
AGGCCCCCGGCATTGGTGGACGTACTCAACAAGCTGTGCGCCCACGACGG
CTGCAGCAGGCATGCTTACTACGGCGTGGAGGGGGGCGTCCATCACGCTG
CAGGGCCCACAAGGCCCCCGATATGGTGAACCTTGCCCGCCCGCAGTGCG
CCCACGAGGGCTGCAGCAGGATCGCTTACTATGGCGAGGAGGGGGGGGGT
CGCTCCCACTGCAGCGCCCACAAGGCCCCCGGCATGGTGGACCTTGCCCA
CACGCTGTGCGCACACGAGGGCTGCAGCAAGCGTGCTCACTACGGCGAGG
AGGGGGGGGGTTGCTCCCACTGCAAGACCCACGAAGCCCCCGGTATTGTA
CTCAATCCCACCAAGCGGTGC
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protein sequence of jgi.p|Trimin1|153749

>Trimin1|153749|gw1.210.63.1 ID=Trimin1|153749|gw1.210.63.1|Name=jgi.p|Trimin1|153749|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
MVKTSYRLCLAEGCLKSASFGEAGGRPSRCRAHKAPGIGGRTQQAVRPRR
LQQACLLRRGGGRPSRCRAHKAPDMVNLARPQCAHEGCSRIAYYGEEGGG
RSHCSAHKAPGMVDLAHTLCAHEGCSKRAHYGEEGGGCSHCKTHEAPGIV
LNPTKRC
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mRNA from alignment at Contig_210:23465..23935+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15903 ID=mRNA_15903|Name=jgi.p|Trimin1|153749|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_210:23465..23935+ (Tribonema minus UTEX_B_3156 )
ATGGTCAAGACCTCGTACAGACTGTGCCTGGCTGAAGGCTGCCTCAAGAG
CGCTAGCTTCGGCGAGGCAGGGGGGCGTCCATCACGCTGCAGGGCCCACA
AGGCCCCCGGCATTGGTGGACGTACTCAACAAGCTGTGCGCCCACGACGG
CTGCAGCAGGCATGCTTACTACGGCGTGGAGGGGGGCGTCCATCACGCTG
CAGGGCCCACAAGGCCCCCGATATGGTGAACCTTGCCCGCCCGCAGTGCG
CCCACGAGGGCTGCAGCAGGATCGCTTACTATGGCGAGGAGGGGGGGGGT
CGCTCCCACTGCAGCGCCCACAAGGCCCCCGGCATGGTGGACCTTGCCCA
CACGCTGTGCGCACACGAGGGCTGCAGCAAGCGTGCTCACTACGGCGAGG
AGGGGGGGGGTTGCTCCCACTGCAAGACCCACGAAGCCCCCGGTATTGTA
CTCAATCCCACCAAGCGGTGC
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Coding sequence (CDS) from alignment at Contig_210:23465..23935+

>mRNA_15903 ID=mRNA_15903|Name=jgi.p|Trimin1|153749|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_210:23465..23935+ (Tribonema minus UTEX_B_3156 )
ATGGTCAAGACCTCGTACAGACTGTGCCTGGCTGAAGGCTGCCTCAAGAG
CGCTAGCTTCGGCGAGGCAGGGGGGCGTCCATCACGCTGCAGGGCCCACA
AGGCCCCCGGCATTGGTGGACGTACTCAACAAGCTGTGCGCCCACGACGG
CTGCAGCAGGCATGCTTACTACGGCGTGGAGGGGGGCGTCCATCACGCTG
CAGGGCCCACAAGGCCCCCGATATGGTGAACCTTGCCCGCCCGCAGTGCG
CCCACGAGGGCTGCAGCAGGATCGCTTACTATGGCGAGGAGGGGGGGGGT
CGCTCCCACTGCAGCGCCCACAAGGCCCCCGGCATGGTGGACCTTGCCCA
CACGCTGTGCGCACACGAGGGCTGCAGCAAGCGTGCTCACTACGGCGAGG
AGGGGGGGGGTTGCTCCCACTGCAAGACCCACGAAGCCCCCGGTATTGTA
CTCAATCCCACCAAGCGGTGC
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