mRNA_15893 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128771
Unique NamemRNA_15893
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A836CJH0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH0_9STRA)

HSP 1 Score: 530 bits (1364), Expect = 3.210e-190
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
Query:    1 VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 789
            VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE
Sbjct:    1 VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 263          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A836CJI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI6_9STRA)

HSP 1 Score: 388 bits (996), Expect = 2.180e-132
Identity = 202/294 (68.71%), Postives = 222/294 (75.51%), Query Frame = 1
Query:    1 VVLIGDFDSNFGMLSTVVANRTVDW-----------------------VHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEE-LWRTYRRYVGGSGXXXXXXXLPL-------PPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 789
            VV IGDFDSN GMLST + +RTVDW                         PPG PPRRYVGMEGLQAFLDDERLLL+AVNQHQAAPPAPHAKLLSLPLGL    D   LWR YRR+   + XXXXXXX            RR LLA+NNSGWQHRAAVNARVNATFGG L+NSY S RPYWEIL+ESKFVLAPSGMGYD +R+WE LAHGA+PI++  PG  RTYA LPVLT+ADW DVTP LL+EVW E+ +ER  EWD+RRLTE+YWLELLADAAA GS+DAITAQHPLRTE
Sbjct:   79 VVFIGDFDSNVGMLSTHLRDRTVDWGDLYNDMRSCLPDSDAAPAADPKFQPPGTPPRRYVGMEGLQAFLDDERLLLFAVNQHQAAPPAPHAKLLSLPLGLAEEADAHALWRVYRRFTRAAXXXXXXXXXDARXXXXXXXXRRALLAINNSGWQHRAAVNARVNATFGGTLINSYGSERPYWEILMESKFVLAPSGMGYDTFRLWEALAHGAVPIIDACPGFSRTYAGLPVLTVADWGDVTPALLQEVWHEFAVERTHEWDYRRLTERYWLELLADAAATGSVDAITAQHPLRTE 372          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A835Z7M1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M1_9STRA)

HSP 1 Score: 374 bits (959), Expect = 1.270e-126
Identity = 183/265 (69.06%), Postives = 206/265 (77.74%), Query Frame = 1
Query:    1 VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDE-ELWRTYRRYVG-GSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 789
            VVL+GDF+ N G  ST + +RTV+W +       R+VGMEG+ A LDD RLLLWA+ Q Q APPAPH KLLSLPLGLP  G    LW TY R++  G G         LPPR VLL +NNSGWQHRA VNA VNATFGG LVNSY SGRPYW+ILLESKFVL+PSGMGYDCYR WE LAHGAIP+VE SPGLDRTYA LPVL +ADW DVTPELLE VW EYT+ERAAEWDF RLTE YWL+LLADAAAAGSID++T +HPL ++
Sbjct:  121 VVLVGDFNDNIGTFSTHIPDRTVNWGNLTAQVEERFVGMEGVSALLDDTRLLLWAIQQQQIAPPAPHPKLLSLPLGLPNAGSAGALWHTYHRFLAHGDGCEQ------LPPRSVLLTINNSGWQHRAMVNAVVNATFGGTLVNSYGSGRPYWDILLESKFVLSPSGMGYDCYRQWEALAHGAIPVVESSPGLDRTYAGLPVLIVADWTDVTPELLESVWHEYTVERAAEWDFNRLTEGYWLDLLADAAAAGSIDSVTERHPLYSD 379          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A7R9WVZ0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVZ0_9STRA)

HSP 1 Score: 136 bits (343), Expect = 8.200e-35
Identity = 94/288 (32.64%), Postives = 135/288 (46.88%), Query Frame = 1
Query:    4 VLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGL------QAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYR-RYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGA----LVNSYASGRP---------------------YWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEW----SPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDA 759
            V++  FD N G LS  V NRT ++ +  G  P  +   +GL        +LD   +L +   QH       H K  S+PLG+     E L+R Y   ++ G          P P +  LL +N+SGWQHRAA++ARV   F  A    + N+Y  G                       Y E L  SKF+L PSG+G+D YR+W+ L    IPI+E       G  RT+  LPVL +    D+TP LLE  + +   + +  + + RLT+ YW + +   A A  +DA
Sbjct:   25 VMLSQFDENVGALSVYVHNRTKNYYY--GTGPDAWANRDGLCSREEAMEYLDHPNMLGFVTTQHHGID---HPKAHSIPLGM----KEALFRIYTGTWLHGQNGITK----PTPKKTQLLMINDSGWQHRAAMSARVIHNFAEAGYSNMTNTYCRGGAKTKSKDQASSCPASQTQRNHLYMEELARSKFILCPSGLGWDSYRIWDALMMMTIPIIERYERPHDGWRRTFDGLPVLWVEHVEDITPALLEREYAKIIAKESQSYQWERLTKNYWFDFIESMAKASPVDA 299          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A482SYM3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYM3_9ARCH)

HSP 1 Score: 127 bits (320), Expect = 9.970e-33
Identity = 72/171 (42.11%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  337 LLAVNNSGWQHRAAVNARVNATFGGALVNSYA--SGRPYWEILL--------------------ESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLR 783
            LL++NNSGW  R  +NA V   F   + N+Y   +  P  +I L                    +SKFVL PSG+G+D YR+WEVL  G+IPIVE +PGLDRTYA+LPVL +  +  VTPELL   + +  ++ A ++ F  L E YWL L+  A    +ID +  QHP R
Sbjct:   19 LLSINNSGWGARTEINAMVARAFNNTVQNTYTRKNNAPRKKIKLTRFNSTETVVVAEDHMVEIAQSKFVLCPSGLGFDTYRLWEVLLLGSIPIVETNPGLDRTYASLPVLVVRSFDQVTPELLHRSY-DCFVKHAHDFKFTHLREDYWLGLIQKALLTANIDHVMKQHPFR 188          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A3E1DRE6_9PROT (Uncharacterized protein n=1 Tax=Candidatus Nitrotoga sp. CP45 TaxID=2184309 RepID=A0A3E1DRE6_9PROT)

HSP 1 Score: 127 bits (318), Expect = 3.120e-31
Identity = 86/254 (33.86%), Postives = 127/254 (50.00%), Query Frame = 1
Query:    4 VLIGDFDSNFGMLSTVVANRTVDW------VHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYA-SGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAA 744
            VLI   + N+G  ST V  RTV W      +   G  P+       ++ +LDD  +      QH A     H  +LS+P+G+    DE +       V   G                L +NNSGW HR  +N  + A FGG + N+Y  S   Y+E +  S+FVL PSGMG+D YR+WE L  GAIP+VE+S G       LPVL + ++ +VTP+LL++ + E  M     +D+ +LT+++W+  +     A
Sbjct:   82 VLITHLNENWGGFSTNVPYRTVQWGDWHSDMINAGCTPQM------VRQYLDDPEVKAVVTPQHTAFW---HPTILSIPIGI-RQSDEII----DHIVNADGTKTKE-----------LLLNNSGWGHRPQINECIIANFGGHISNTYGMSQTEYFEAITCSRFVLCPSGMGWDSYRIWETLMLGAIPVVEFSAGWHTVLDDLPVLFVTNFNEVTPDLLDKAYPEI-MSHCGRFDYGKLTKQWWVSKITKLLVA 309          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: B8LCI3_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCI3_THAPS)

HSP 1 Score: 128 bits (321), Expect = 5.930e-31
Identity = 83/256 (32.42%), Postives = 125/256 (48.83%), Query Frame = 1
Query:    4 VLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLG--LPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEW---SPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSID 756
            V+    + N+G+ S+ V NRTVDW         +    + L  +L+   LL      HQ+    PH K+  LPLG  L     E+L                    P+  R   + +N S +  R ++   V A FGG L N+Y  G  +W+ L E+KF+L PSG+G+D YR WE L  GAIP++E      G  + Y  LPVL +  + +VTP LLE+ +    + +A E+ F +LT ++W++L+     A   D
Sbjct:  157 VVFAHINENWGVFSSPVPNRTVDWYDLMLLWENQGCDRDDLYTYLNHPNLLAVFTTTHQSTI-EPHPKVFPLPLGVTLAKQASEQLHAK-----------------PMSNRTKTVMINMSSFGGRPSIAKSVIANFGGTLNNTYKDGSDFWQQLREAKFILCPSGLGWDTYRSWEALVMGAIPVLETYYRRDGFYQAYDGLPVLWVDHYDNVTPSLLEKAY-PIILAKAHEYKFEKLTIQWWIDLINSKRVAAPRD 393          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: B5YNC8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNC8_THAPS)

HSP 1 Score: 120 bits (300), Expect = 6.980e-28
Identity = 82/245 (33.47%), Postives = 117/245 (47.76%), Query Frame = 1
Query:   22 DSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVN-------QHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEW---SPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELL 726
            D N+G  S +V  RT D +   G   +  V        LDD    L   N       QHQ+A   PH K+   PLG+              +                 R  LL +N S W+HR  +   V A F G + N+Y  G  YW+ L ESKF+L+PSG+G+D YR W+ L  GAIP++E    + G  R +  LPVL +  + +VTP LLEE + +  + +A  ++F +LT  +W EL+
Sbjct:  176 DENWGAFSDIVPTRTDDEL---GGKVKWSVQWNESGCSLDDLWYYLNHTNASAIFTTQHQSAI-EPHPKVFPFPLGV--------------FRAKDALNNLMTNKQSAVRTTLLVINQSHWRHRIGIAEEVIAKFNGTISNTYMDGTDYWQHLQESKFILSPSGIGFDTYRTWDALTMGAIPVLETYYRNDGFYRIFDDLPVLWVDHYDNVTPALLEEEYPKI-IAKARSYNFEKLTIGWWYELI 401          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: K0SI05_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SI05_THAOC)

HSP 1 Score: 110 bits (274), Expect = 7.830e-24
Identity = 82/251 (32.67%), Postives = 117/251 (46.61%), Query Frame = 1
Query:    4 VLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQ-------HQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEW---SPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELL 726
            V+IG+ + N+G  S  V NRTVDWV       R +    G     D+    L  VN        HQ      H K+ S+PLGL      E +                    LP R  LL +  S +  R ++  R+ + F G + N Y  G  Y+  L  SKF++ PSG+G+D YR WE L  G IP++E      G  RT+  LPVL +  + +VTP LLEE +    +  A  + F +LT  +W++L+
Sbjct:  179 VVIGNINENWGAFSEFVPNRTVDWV-------RNWTAFFGTSK--DELLRYLGHVNTSAVFTVTHQFID---HPKVFSVPLGLKYPNIPEAF----------------YETSLPNRTNLLFMAISDFGGRPSIAQRITSNFNGTVQNHYHDGTDYFRELRASKFMVCPSGLGWDTYRAWESLVMGTIPVLETYGRQDGFYRTFDDLPVLWVDHYDNVTPSLLEEAYPRI-LRGARSYKFEKLTNWWWVDLI 400          
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A7S3HMB8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMB8_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.180e-23
Identity = 81/270 (30.00%), Postives = 124/270 (45.93%), Query Frame = 1
Query:    4 VLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRA----AVNARVNATFGGALVNSYASGR----PYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 789
            + I   + N+GMLST   NRT  W      P    V     + FLD  + L+   NQH       H KL+ +P G+P       W   R  +  +        L    ++ LL    SGW  R      V+  V A      VN+  + R     Y+  L  + F L   G+GYDC+R WE++  G+I ++E   G DR    LPVL + D+ ++TPELL   + E  + RA ++++ RL + +W   +A+ +A  S+  I  + P+  E
Sbjct:  282 ISICTLNENWGMLSTRFPNRTAGWGRCCDQPKDSVV-----REFLDHPKTLMLVTNQHVNVS---HPKLMIMPRGIPL-----TWGFTRFMIWDA----MRNTLKHTRKQSLLFAAASGWGPRPQILKCVSDHVPAELFDGHVNTPKAERLGREQYYNKLGSAMFGLGLPGLGYDCFRAWELMLMGSIVVLESGVGFDRMMYRLPVLFVEDFYEITPELLRVAYVE-ALYRADDFEYERLKQSFWFGFIANVSATMSVQTILDKFPMSAE 533          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJH0_9STRA3.210e-190100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CJI6_9STRA2.180e-13268.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7M1_9STRA1.270e-12669.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9WVZ0_9STRA8.200e-3532.64Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A482SYM3_9ARCH9.970e-3342.11Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A3E1DRE6_9PROT3.120e-3133.86Uncharacterized protein n=1 Tax=Candidatus Nitroto... [more]
B8LCI3_THAPS5.930e-3132.42Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
B5YNC8_THAPS6.980e-2833.47Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
K0SI05_THAOC7.830e-2432.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3HMB8_9STRA8.180e-2330.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_173contigContig_173:279693..281810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128771|gw1.173.2.1
Max annot lvl2759|Eukaryota
EggNOG OGs2D0W7@1|root,2SFRJ@2759|Eukaryota,2XEWX@2836|Bacillariophyta
Evalue9.73e-32
Seed ortholog35128.Thaps10391
Hectar predicted targeting categoryother localisation
TranscriptId129093
TrackFilteredModels1
ProteinId128771
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128771gene_15893Tribonema minus UTEX_B_3156 geneContig_173 279693..281810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128771Trimin1|128771|gw1.173.2.1Tribonema minus UTEX_B_3156 polypeptideContig_173 279693..281810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15893_3exon_15893_3Tribonema minus UTEX_B_3156 exonContig_173 279693..279851 -
exon_15893_2exon_15893_2Tribonema minus UTEX_B_3156 exonContig_173 281112..281660 -
exon_15893_1exon_15893_1Tribonema minus UTEX_B_3156 exonContig_173 281730..281810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15893CDS_15893Tribonema minus UTEX_B_3156 CDSContig_173 281730..281810 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15893 ID=mRNA_15893|Name=jgi.p|Trimin1|128771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_173:279693..281810- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGTCCTCATCGGCGACTTCGACAGCAACTTCGGCATGCTCAGCACGGT
CGTCGCCAACAGGACCGTAGACTGGGTCCACCCCCCCGGAGCCCCCCCGC
GCCGCTACGTGGGGATGGAAGGCCTGCAGGCGTTTCTCGACGACGAGCGG
CTGCTGCTGTGGGCGGTCAATCAGCACCAGGCGGCGCCGCCGGCGCCGCA
CGCGAAGCTGCTGTCGCTGCCGCTGGGCCTGCCGACGCACGGCGACGAGG
AGCTGTGGCGCACGTACAGGAGGTATGTGGGGGGCAGCGGCAGCGGCGGC
GGCGGGGCAGCGCTGCCGCTGCCGCCGCGCCGCGTCCTGCTCGCCGTCAA
CAACAGCGGCTGGCAGCACCGCGCGGCGGTCAACGCGCGCGTGAACGCGA
CCTTTGGCGGCGCGCTCGTCAACTCTTACGCGTCGGGGCGCCCGTACTGG
GAGATACTGCTGGAGTCGAAGTTCGTGCTCGCGCCCTCGGGCATGGGCTA
CGACTGCTACAGGGTGTGGGAGGTGCTGGCGCACGGCGCGATACCGATAG
TGGAGTGGAGCCCGGGGCTCGACAGGACGTACGCGGCGTTGCCGGTGCTG
ACGATCGCGGATTGGGCCGACGTAACTCCGGAGCTCCTGGAGGAAGTCTG
GCGCGAGTACACAATGGAGCGCGCCGCAGAGTGGGACTTCCGCCGCCTTA
CGGAGAAGTACTGGCTGGAGCTGCTGGCAGACGCCGCCGCGGCCGGCAGC
ATCGACGCCATCACCGCGCAGCACCCGCTGCGTACGGAG
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protein sequence of jgi.p|Trimin1|128771

>Trimin1|128771|gw1.173.2.1 ID=Trimin1|128771|gw1.173.2.1|Name=jgi.p|Trimin1|128771|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp
VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDER
LLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGSGG
GGAALPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYW
EILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVL
TIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGS
IDAITAQHPLRTE
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mRNA from alignment at Contig_173:279693..281810-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15893 ID=mRNA_15893|Name=jgi.p|Trimin1|128771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2118bp|location=Sequence derived from alignment at Contig_173:279693..281810- (Tribonema minus UTEX_B_3156 )
GTCGTCCTCATCGGCGACTTCGACAGCAACTTCGGCATGCTCAGCACGGT CGTCGCCAACAGGACCGTAGACTGGGTCCACGTACCGGAGGAGCTGCAGC GCTGCCTCCCCGACTCGGACGCGGCGCCCGCGGCGGACCCCGAATTCCAG CCCCCCGGAGCCCCCCCGCGCCGCTACGTGGGGATGGAAGGCCTGCAGGC GTTTCTCGACGACGAGCGGCTGCTGCTGTGGGCGGTCAATCAGCACCAGG CGGCGCCGCCGGCGCCGCACGCGAAGCTGCTGTCGCTGCCGCTGGGCCTG CCGACGCACGGCGACGAGGAGCTGTGGCGCACGTACAGGAGGTATGTGGG GGGCAGCGGCAGCGGCGGCGGCGGGGCAGCGCTGCCGCTGCCGCCGCGCC GCGTCCTGCTCGCCGTCAACAACAGCGGCTGGCAGCACCGCGCGGCGGTC AACGCGCGCGTGAACGCGACCTTTGGCGGCGCGCTCGTCAACTCTTACGC GTCGGGGCGCCCGTACTGGGAGATACTGCTGGAGTCGAAGTTCGTGCTCG CGCCCTCGGGCATGGGCTACGACTGCTACAGGGTGTGGGAGGTGCTGGCG CACGGCGCGATACCGATAGTGGAGTGGAGCCCGGGGCTCGACAGGACGTA CGCGGCGTTGCCGGTGCTGACGATCGCGGATTGGGCCGACGTAACTCCGG TGAGCGCCGCTGCTGCTGATTGTCCGCCAGTGAGCTTTGCTGGCCGTGCA GCACAGAGGCGCTGTGTGGGCTTTGTGTATGTGTGTGTGTGTGTGTGTTT GTGCTTGCGCGTTTGCGCCTTCCTCGCAGGTTTTCAAGACTTACAGTAGG TCACCTGCGGGATGGAACGCATTACAGTATGCGATGGTTATCTGCAGGAG TGTGGTGCCCGAAATCTGCACGTTCTCCCGATACTCTGATGCTTGCTAAC GCCGTGCGAGTGTCCTGGTGCGTCTTCAGAGAACGACCAATCCAAGGAGG CTGCGGCACACATGCTCCTTCCTGGGGCTCTGACGCTCCTGCCGCTAGAA GCAGGCGCCGGCATCATCATGTAGAGCAGCGCTGTGTCGCTGTCTGCACA AGCATGGGGCCAGCGCGTTGTTGAACTGCTGCGATGTACAGAGGTCGTCA ACGACATAGAGACAGCGAGCCACGCATTGCCTGTGACGGCCGGCCTCAAA ACTGCGCAGGCGCTGTTCCATACACTGTGTATGGGAACATGTGCATAGCA TACCACGGACGGCGGAGCCAGCGCAGGCGCCTGCTGCGCGCTCGCGCGGC CGGCGGCGCTCGCGCGTTCATCAGGGCTAAGCAGCACCCGCTGCTCCGTG CGGCGTTAAGCAATCACGCGCTGCACCCTGCCTGCATCGCCTAAAGGTGG AATTATAATAGTGCACGAGCGTATACACACTCCGCGGTGCTGACGAGCGT GCCGGGTGCGCTCGGTTCGCCGACGCCCATGGAGGTCACAACAGAGTCGC GCCATCGCGTTGCGGAGCGCAGCGCAGCAGCCCTCGAGTCACCTACAAAC TGCGCCTCCGCTTCCTCACAAGCATGCGCAACAACGGCGGCAGCAGCAGC GCTTCCCCGTCCACCCCCCTCACCGCGGCGACCACAGTCGCGCACGCCAA TTCGTCGCCGATCGCTGACCGCACACACCCGCTGCTCCCCCATCGCAGTC TCTGCTGGAGGAAGTCTGGCAGGAGTACACCGTGGAGCGCGCCGCAGAGT GGGACTTCCCCACATGTAGGAATGGTACATGAGCAGTTGGCAGCAGCGCG CTGCCAACTCTGCGCTCTGAGTGCGTCACCGCACCGTTGTGCCGCGTCTG GTCACAGCGGCCTCGCAGCCCGGCCTCGCAGTCGTGCTTCTCCAGCGCAG TGCGCGCTGTTGCTGAGCAAACGACGTCTGCTCCTTTGCGTGCGCTGCCA CGCCCGCAGGAGCTCCTGGAGGAAGTCTGGCGCGAGTACACAATGGAGCG CGCCGCAGAGTGGGACTTCCGCCGCCTTACGGAGAAGTACTGGCTGGAGC TGCTGGCAGACGCCGCCGCGGCCGGCAGCATCGACGCCATCACCGCGCAG CACCCGCTGCGTACGGAG
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Coding sequence (CDS) from alignment at Contig_173:279693..281810-

>mRNA_15893 ID=mRNA_15893|Name=jgi.p|Trimin1|128771|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_173:279693..281810- (Tribonema minus UTEX_B_3156 )
GTCGTCCTCATCGGCGACTTCGACAGCAACTTCGGCATGCTCAGCACGGT
CGTCGCCAACAGGACCGTAGACTGGGTCCACCCCCCCGGAGCCCCCCCGC
GCCGCTACGTGGGGATGGAAGGCCTGCAGGCGTTTCTCGACGACGAGCGG
CTGCTGCTGTGGGCGGTCAATCAGCACCAGGCGGCGCCGCCGGCGCCGCA
CGCGAAGCTGCTGTCGCTGCCGCTGGGCCTGCCGACGCACGGCGACGAGG
AGCTGTGGCGCACGTACAGGAGGTATGTGGGGGGCAGCGGCAGCGGCGGC
GGCGGGGCAGCGCTGCCGCTGCCGCCGCGCCGCGTCCTGCTCGCCGTCAA
CAACAGCGGCTGGCAGCACCGCGCGGCGGTCAACGCGCGCGTGAACGCGA
CCTTTGGCGGCGCGCTCGTCAACTCTTACGCGTCGGGGCGCCCGTACTGG
GAGATACTGCTGGAGTCGAAGTTCGTGCTCGCGCCCTCGGGCATGGGCTA
CGACTGCTACAGGGTGTGGGAGGTGCTGGCGCACGGCGCGATACCGATAG
TGGAGTGGAGCCCGGGGCTCGACAGGACGTACGCGGCGTTGCCGGTGCTG
ACGATCGCGGATTGGGCCGACGTAACTCCGGAGCTCCTGGAGGAAGTCTG
GCGCGAGTACACAATGGAGCGCGCCGCAGAGTGGGACTTCCGCCGCCTTA
CGGAGAAGTACTGGCTGGAGCTGCTGGCAGACGCCGCCGCGGCCGGCAGC
ATCGACGCCATCACCGCGCAGCACCCGCTGCGTACGGAG
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