mRNA_15893 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A836CJH0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH0_9STRA) HSP 1 Score: 530 bits (1364), Expect = 3.210e-190 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
Query: 1 VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 789
VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE
Sbjct: 1 VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 263
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A836CJI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI6_9STRA) HSP 1 Score: 388 bits (996), Expect = 2.180e-132 Identity = 202/294 (68.71%), Postives = 222/294 (75.51%), Query Frame = 1
Query: 1 VVLIGDFDSNFGMLSTVVANRTVDW-----------------------VHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEE-LWRTYRRYVGGSGXXXXXXXLPL-------PPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 789
VV IGDFDSN GMLST + +RTVDW PPG PPRRYVGMEGLQAFLDDERLLL+AVNQHQAAPPAPHAKLLSLPLGL D LWR YRR+ + XXXXXXX RR LLA+NNSGWQHRAAVNARVNATFGG L+NSY S RPYWEIL+ESKFVLAPSGMGYD +R+WE LAHGA+PI++ PG RTYA LPVLT+ADW DVTP LL+EVW E+ +ER EWD+RRLTE+YWLELLADAAA GS+DAITAQHPLRTE
Sbjct: 79 VVFIGDFDSNVGMLSTHLRDRTVDWGDLYNDMRSCLPDSDAAPAADPKFQPPGTPPRRYVGMEGLQAFLDDERLLLFAVNQHQAAPPAPHAKLLSLPLGLAEEADAHALWRVYRRFTRAAXXXXXXXXXDARXXXXXXXXRRALLAINNSGWQHRAAVNARVNATFGGTLINSYGSERPYWEILMESKFVLAPSGMGYDTFRLWEALAHGAVPIIDACPGFSRTYAGLPVLTVADWGDVTPALLQEVWHEFAVERTHEWDYRRLTERYWLELLADAAATGSVDAITAQHPLRTE 372
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A835Z7M1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M1_9STRA) HSP 1 Score: 374 bits (959), Expect = 1.270e-126 Identity = 183/265 (69.06%), Postives = 206/265 (77.74%), Query Frame = 1
Query: 1 VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDE-ELWRTYRRYVG-GSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 789
VVL+GDF+ N G ST + +RTV+W + R+VGMEG+ A LDD RLLLWA+ Q Q APPAPH KLLSLPLGLP G LW TY R++ G G LPPR VLL +NNSGWQHRA VNA VNATFGG LVNSY SGRPYW+ILLESKFVL+PSGMGYDCYR WE LAHGAIP+VE SPGLDRTYA LPVL +ADW DVTPELLE VW EYT+ERAAEWDF RLTE YWL+LLADAAAAGSID++T +HPL ++
Sbjct: 121 VVLVGDFNDNIGTFSTHIPDRTVNWGNLTAQVEERFVGMEGVSALLDDTRLLLWAIQQQQIAPPAPHPKLLSLPLGLPNAGSAGALWHTYHRFLAHGDGCEQ------LPPRSVLLTINNSGWQHRAMVNAVVNATFGGTLVNSYGSGRPYWDILLESKFVLSPSGMGYDCYRQWEALAHGAIPVVESSPGLDRTYAGLPVLIVADWTDVTPELLESVWHEYTVERAAEWDFNRLTEGYWLDLLADAAAAGSIDSVTERHPLYSD 379
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A7R9WVZ0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVZ0_9STRA) HSP 1 Score: 136 bits (343), Expect = 8.200e-35 Identity = 94/288 (32.64%), Postives = 135/288 (46.88%), Query Frame = 1
Query: 4 VLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGL------QAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYR-RYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGA----LVNSYASGRP---------------------YWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEW----SPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDA 759
V++ FD N G LS V NRT ++ + G P + +GL +LD +L + QH H K S+PLG+ E L+R Y ++ G P P + LL +N+SGWQHRAA++ARV F A + N+Y G Y E L SKF+L PSG+G+D YR+W+ L IPI+E G RT+ LPVL + D+TP LLE + + + + + + RLT+ YW + + A A +DA
Sbjct: 25 VMLSQFDENVGALSVYVHNRTKNYYY--GTGPDAWANRDGLCSREEAMEYLDHPNMLGFVTTQHHGID---HPKAHSIPLGM----KEALFRIYTGTWLHGQNGITK----PTPKKTQLLMINDSGWQHRAAMSARVIHNFAEAGYSNMTNTYCRGGAKTKSKDQASSCPASQTQRNHLYMEELARSKFILCPSGLGWDSYRIWDALMMMTIPIIERYERPHDGWRRTFDGLPVLWVEHVEDITPALLEREYAKIIAKESQSYQWERLTKNYWFDFIESMAKASPVDA 299
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A482SYM3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYM3_9ARCH) HSP 1 Score: 127 bits (320), Expect = 9.970e-33 Identity = 72/171 (42.11%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 337 LLAVNNSGWQHRAAVNARVNATFGGALVNSYA--SGRPYWEILL--------------------ESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLR 783
LL++NNSGW R +NA V F + N+Y + P +I L +SKFVL PSG+G+D YR+WEVL G+IPIVE +PGLDRTYA+LPVL + + VTPELL + + ++ A ++ F L E YWL L+ A +ID + QHP R
Sbjct: 19 LLSINNSGWGARTEINAMVARAFNNTVQNTYTRKNNAPRKKIKLTRFNSTETVVVAEDHMVEIAQSKFVLCPSGLGFDTYRLWEVLLLGSIPIVETNPGLDRTYASLPVLVVRSFDQVTPELLHRSY-DCFVKHAHDFKFTHLREDYWLGLIQKALLTANIDHVMKQHPFR 188
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A3E1DRE6_9PROT (Uncharacterized protein n=1 Tax=Candidatus Nitrotoga sp. CP45 TaxID=2184309 RepID=A0A3E1DRE6_9PROT) HSP 1 Score: 127 bits (318), Expect = 3.120e-31 Identity = 86/254 (33.86%), Postives = 127/254 (50.00%), Query Frame = 1
Query: 4 VLIGDFDSNFGMLSTVVANRTVDW------VHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYA-SGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAA 744
VLI + N+G ST V RTV W + G P+ ++ +LDD + QH A H +LS+P+G+ DE + V G L +NNSGW HR +N + A FGG + N+Y S Y+E + S+FVL PSGMG+D YR+WE L GAIP+VE+S G LPVL + ++ +VTP+LL++ + E M +D+ +LT+++W+ + A
Sbjct: 82 VLITHLNENWGGFSTNVPYRTVQWGDWHSDMINAGCTPQM------VRQYLDDPEVKAVVTPQHTAFW---HPTILSIPIGI-RQSDEII----DHIVNADGTKTKE-----------LLLNNSGWGHRPQINECIIANFGGHISNTYGMSQTEYFEAITCSRFVLCPSGMGWDSYRIWETLMLGAIPVVEFSAGWHTVLDDLPVLFVTNFNEVTPDLLDKAYPEI-MSHCGRFDYGKLTKQWWVSKITKLLVA 309
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: B8LCI3_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCI3_THAPS) HSP 1 Score: 128 bits (321), Expect = 5.930e-31 Identity = 83/256 (32.42%), Postives = 125/256 (48.83%), Query Frame = 1
Query: 4 VLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLG--LPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEW---SPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSID 756
V+ + N+G+ S+ V NRTVDW + + L +L+ LL HQ+ PH K+ LPLG L E+L P+ R + +N S + R ++ V A FGG L N+Y G +W+ L E+KF+L PSG+G+D YR WE L GAIP++E G + Y LPVL + + +VTP LLE+ + + +A E+ F +LT ++W++L+ A D
Sbjct: 157 VVFAHINENWGVFSSPVPNRTVDWYDLMLLWENQGCDRDDLYTYLNHPNLLAVFTTTHQSTI-EPHPKVFPLPLGVTLAKQASEQLHAK-----------------PMSNRTKTVMINMSSFGGRPSIAKSVIANFGGTLNNTYKDGSDFWQQLREAKFILCPSGLGWDTYRSWEALVMGAIPVLETYYRRDGFYQAYDGLPVLWVDHYDNVTPSLLEKAY-PIILAKAHEYKFEKLTIQWWIDLINSKRVAAPRD 393
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: B5YNC8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNC8_THAPS) HSP 1 Score: 120 bits (300), Expect = 6.980e-28 Identity = 82/245 (33.47%), Postives = 117/245 (47.76%), Query Frame = 1
Query: 22 DSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVN-------QHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEW---SPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELL 726
D N+G S +V RT D + G + V LDD L N QHQ+A PH K+ PLG+ + R LL +N S W+HR + V A F G + N+Y G YW+ L ESKF+L+PSG+G+D YR W+ L GAIP++E + G R + LPVL + + +VTP LLEE + + + +A ++F +LT +W EL+
Sbjct: 176 DENWGAFSDIVPTRTDDEL---GGKVKWSVQWNESGCSLDDLWYYLNHTNASAIFTTQHQSAI-EPHPKVFPFPLGV--------------FRAKDALNNLMTNKQSAVRTTLLVINQSHWRHRIGIAEEVIAKFNGTISNTYMDGTDYWQHLQESKFILSPSGIGFDTYRTWDALTMGAIPVLETYYRNDGFYRIFDDLPVLWVDHYDNVTPALLEEEYPKI-IAKARSYNFEKLTIGWWYELI 401
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: K0SI05_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SI05_THAOC) HSP 1 Score: 110 bits (274), Expect = 7.830e-24 Identity = 82/251 (32.67%), Postives = 117/251 (46.61%), Query Frame = 1
Query: 4 VLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQ-------HQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRAAVNARVNATFGGALVNSYASGRPYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEW---SPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELL 726
V+IG+ + N+G S V NRTVDWV R + G D+ L VN HQ H K+ S+PLGL E + LP R LL + S + R ++ R+ + F G + N Y G Y+ L SKF++ PSG+G+D YR WE L G IP++E G RT+ LPVL + + +VTP LLEE + + A + F +LT +W++L+
Sbjct: 179 VVIGNINENWGAFSEFVPNRTVDWV-------RNWTAFFGTSK--DELLRYLGHVNTSAVFTVTHQFID---HPKVFSVPLGLKYPNIPEAF----------------YETSLPNRTNLLFMAISDFGGRPSIAQRITSNFNGTVQNHYHDGTDYFRELRASKFMVCPSGLGWDTYRAWESLVMGTIPVLETYGRQDGFYRTFDDLPVLWVDHYDNVTPSLLEEAYPRI-LRGARSYKFEKLTNWWWVDLI 400
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Match: A0A7S3HMB8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMB8_9STRA) HSP 1 Score: 107 bits (267), Expect = 8.180e-23 Identity = 81/270 (30.00%), Postives = 124/270 (45.93%), Query Frame = 1
Query: 4 VLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERLLLWAVNQHQAAPPAPHAKLLSLPLGLPTHGDEELWRTYRRYVGGSGXXXXXXXLPLPPRRVLLAVNNSGWQHRA----AVNARVNATFGGALVNSYASGR----PYWEILLESKFVLAPSGMGYDCYRVWEVLAHGAIPIVEWSPGLDRTYAALPVLTIADWADVTPELLEEVWREYTMERAAEWDFRRLTEKYWLELLADAAAAGSIDAITAQHPLRTE 789
+ I + N+GMLST NRT W P V + FLD + L+ NQH H KL+ +P G+P W R + + L ++ LL SGW R V+ V A VN+ + R Y+ L + F L G+GYDC+R WE++ G+I ++E G DR LPVL + D+ ++TPELL + E + RA ++++ RL + +W +A+ +A S+ I + P+ E
Sbjct: 282 ISICTLNENWGMLSTRFPNRTAGWGRCCDQPKDSVV-----REFLDHPKTLMLVTNQHVNVS---HPKLMIMPRGIPL-----TWGFTRFMIWDA----MRNTLKHTRKQSLLFAAASGWGPRPQILKCVSDHVPAELFDGHVNTPKAERLGREQYYNKLGSAMFGLGLPGLGYDCFRAWELMLMGSIVVLESGVGFDRMMYRLPVLFVEDFYEITPELLRVAYVE-ALYRADDFEYERLKQSFWFGFIANVSATMSVQTILDKFPMSAE 533 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128771 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15893 ID=mRNA_15893|Name=jgi.p|Trimin1|128771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_173:279693..281810- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCGTCCTCATCGGCGACTTCGACAGCAACTTCGGCATGCTCAGCACGGTback to top protein sequence of jgi.p|Trimin1|128771 >Trimin1|128771|gw1.173.2.1 ID=Trimin1|128771|gw1.173.2.1|Name=jgi.p|Trimin1|128771|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp VVLIGDFDSNFGMLSTVVANRTVDWVHPPGAPPRRYVGMEGLQAFLDDERback to top mRNA from alignment at Contig_173:279693..281810- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15893 ID=mRNA_15893|Name=jgi.p|Trimin1|128771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2118bp|location=Sequence derived from alignment at Contig_173:279693..281810- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_173:279693..281810- >mRNA_15893 ID=mRNA_15893|Name=jgi.p|Trimin1|128771|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_173:279693..281810- (Tribonema minus UTEX_B_3156 )back to top |