mRNA_1589 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: A0A835Z1H9_9STRA (SF3 helicase domain-containing protein (Fragment) n=6 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H9_9STRA) HSP 1 Score: 699 bits (1805), Expect = 1.230e-253 Identity = 352/358 (98.32%), Postives = 353/358 (98.60%), Query Frame = 1 Query: 1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQEPALPPIKKRDMHEQMAAKGFAK 1074 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGH REEIIVFLLGRSA NGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAG+ SSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLA VVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNY ARQEPALPPIKKRDMHEQMAAKGFAK Sbjct: 9 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGRSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGSASSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAGVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYRARQEPALPPIKKRDMHEQMAAKGFAK 366
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: A0A835YS19_9STRA (D5_N domain-containing protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS19_9STRA) HSP 1 Score: 698 bits (1802), Expect = 7.910e-244 Identity = 358/384 (93.23%), Postives = 359/384 (93.49%), Query Frame = 1 Query: 1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQYNFKCVYARLKSAGGY 1152 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGH REEIIVFLLG SA NGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGA SSHMMALR G +DAQMIKYISGGADISGRELFG QTSFSPTAVP ANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNN ARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQ N KCVYA LKSAGGY Sbjct: 614 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHVREEIIVFLLGCSARNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAASSHMMALRAT---------GGRCVDAQMIKYISGGADISGRELFGKQTSFSPTAVPRANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNSRARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQDNCKCVYAGLKSAGGY 988
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: A0A835Z1L1_9STRA (D5_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L1_9STRA) HSP 1 Score: 199 bits (507), Expect = 8.430e-57 Identity = 130/357 (36.41%), Postives = 187/357 (52.38%), Query Frame = 1 Query: 1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAK-FRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQEPALPPIKKRDMHEQMAAKGF 1068 D+ F LLD +KD+ S +GVV+L TATLRPRVR D L A++ ++ + P + + + + D+TL+ RL RP LE + R++GYSITGH REEIIV +G A N KG++ LL VL ++Y AP+S + AGA SS M AL G R+ +DE+P D Q + ++GGA I REL+ Q SF N N ++ A ++RI P D + + D + H + + K++ NL AF + V AK+WYE GLG P CC +N + WI + CE+G EG L +S +N++CA + P I +M +GF Sbjct: 13 DKTFLNLLDADKDVLSVTDGVVDLRTATLRPRVRGDYLIYALSTPFDPEHPELHTIEKWMKDVTLS--ERLGRPEYLEFMQRLIGYSITGHTREEIIVMFIGNGA-NSKGVLHELLSDVLESLYYAAPRSIIVQTARGGAGAASSDMAALNGKRIGAVDEMPDEPLNDTQF-RLLAGGAGIPARELYSAQASFKNLCQIILNFNFPVQMRITHATLRRIMACPFDMQALPVVPMSGAALDPTNPRHILLDIKMKGNLSRAAFFSWAVAGAKKWYEEGLGPHPKCCADLRSHIMDDNADVGMWIAERCEVG--EG------LMASTKMAWNDFCASR-PEGNNITNASFRVEMGRRGF 356
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: A0A257JK46_9PROT (SF3 helicase domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium PA3 TaxID=2015571 RepID=A0A257JK46_9PROT) HSP 1 Score: 115 bits (287), Expect = 2.060e-24 Identity = 105/377 (27.85%), Postives = 173/377 (45.89%), Query Frame = 1 Query: 22 LDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEP-AIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQEPALPPIKKRDMHEQMAAKGFAKIDDYRKAHSQYNFKCVYARLKSAGG 1149 LD + NGVV+L L P +TR D++ S + P ++ L + ++ LL LGY++TG+ EEI++F +G A NGK I +++ +LG AP L + + G + M L GAR+V ++ELPAG+ LD Q++K ++G IS R L ++ P PW TN PI+K + I +RI I+P F +++ ++ LRE + LA +V+ A+R+ GL PA K + ++D L ++ EC A A + + F + N+C ++ + P K+ +++ +GF D N K Y L+++GG Sbjct: 195 LDAKPLLLGVGNGVVDLRRKRLLPNEPGYFITRYCYADFDP-SAQCPSWLRSLDAMFQGDTATIDAVQLL------LGYTLTGYSTEEIMIFCVGFGA-NGKSIFGNVVAAILGDYSRTAPSQLLASRRTDDHGP-RNDMAMLDGARLVSINELPAGMHLDEQVVKQLAGREPISARFLHKEYFTYEPRFTPWVRTNHKPIVKGDDEGIWRRIVILPFRRTFAP----------HEQDPHLEGKLLRER---DGILAWMVEGAQRYLREGLKLSPAM-KRELAQYRTDSDMLGEFLA-ECTAT----ATGARVEQKTLFLSWQNWC--KDNGVQPGSKKTFTQRLKERGFPPKDS--------NGKRYYQGLRTSGG 533
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: A0A1Y1IMX7_KLENI (SF3 helicase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMX7_KLENI) HSP 1 Score: 112 bits (280), Expect = 3.180e-23 Identity = 97/335 (28.96%), Postives = 150/335 (44.78%), Query Frame = 1 Query: 1 DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRI-LGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAV---SAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMP-IIKAEPAIMQRIEIIPCDAKFRTPG--DAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGG--------LGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALIL 960 D + KL+D + D C NGV++L T L + TR+ + Y S + D+ N + R L++ LGY++TGH EEI G + NGK ++ LQ+ G Y P S KA + GA SSH++AL+GAR+ DE +++ IK ++GG ++ RELF SF PT TN P I A+ +++R+ ++P ++ D P+ TH T L + E L VV+ + WY L PA A D + E D ++ ++ + C++GP A A +L Sbjct: 522 DPEMIKLMDCDIDSVGCPNGVLDLRTGILSFAHPSQLCTRSTGVRYMGLSHNTDRFDAFVMDL-------FNSDESIVRWLQLFLGYALTGHTSEEIFCIWYGAGS-NGKSALKMALQKAFGS--YYTPMSKDCIIKAGGKRAEGAASSHLVALKGARLALCDESEESQVINSACIKEMTGGGAVTCRELFQKCESFVPTHANVLLTNHKPSIADADGGLLRRVSLLPFRNSYKVAEEVDPNDPHSKPQSTHL--KTWLESSEGAEECLVWVVRGSVEWYARQSANPAAKVLAPLPAPMAAAFDEYLREFDDMRMFLKEFCDIGPTFVAPSADLL 844
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: UPI000AB7246B (Uncharacterized protein n=2 Tax=Croceicoccus mobilis TaxID=1703339 RepID=UPI000AB7246B) HSP 1 Score: 110 bits (275), Expect = 1.320e-22 Identity = 97/301 (32.23%), Postives = 140/301 (46.51%), Query Frame = 1 Query: 22 LDVNKDIFSCQNGVVELATATLRPRVRKDML-TRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEP-AIMQRIEIIPCDAKFRTPG-----DAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGG---LGEKPACCKLACDAFAAENDTL 894 LD N + NGVV+L T L P R DML TR DY+ + P +Q L ++ A + + R LGY++TG EEIIVF +G A NGK I +++ +++G AP S L + G M L GAR+V ++ELPAG+ +D Q +K ++G IS REL+ +F P W TN PIIK + I +RI ++P KF +AK + N ++ + L+ + A +R Y LGE A C +A A + L Sbjct: 450 LDANPMLLGVGNGVVDLTTGALVPN-RSDMLITRHCEADYDM-AATCPRWVQFLDEVFAGDQ------ATIHSVQRSLGYTLTGLNTEEIIVFCIGFGA-NGKSIFGNIVNRIIGGYSKVAPHSLLATRRRDDHGPRGDIAM-LEGARLVSVNELPAGMQMDEQAVKALAGREPISARELYEGFRTFDPRFTVWVRTNHRPIIKGDDDGIWRRIIVLPFRQKFEGASCDKHLEAKLWAERNGILRWMIEGARQYLATGNLSLSPTILAEQRQYRSDSDLLGEFLADCTIADPAGRVHDQEL 740
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: A0A4P6JVW9_9CHLR (SF3 helicase domain-containing protein n=1 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4P6JVW9_9CHLR) HSP 1 Score: 108 bits (270), Expect = 6.950e-22 Identity = 91/320 (28.44%), Postives = 144/320 (45.00%), Query Frame = 1 Query: 40 IFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAV-SAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKA-EPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNY 993 + + +GV++L T LRP +D + + P Q L +I P+R + A L+RL GYSITG E + L G NGK + ++L++VLG T+ S GA + H+ L+G R++ +E G L+ IK+++GG++IS R+L G Q SF PT + TN P A + A +R +I D K R K Y+ + + K + LA +V+ RW + GL P+ L + + E D L ++I D C + P A + S ++ Y + Sbjct: 570 LLATPSGVLDLRTGQLRPGRPEDFIRTVCPTKWTGLETPCPRFEQFLQEIFEDKPDRTSVIAFLQRL---FGYSITGLTCEAVFPILFGEEGRNGKDTLLNVLREVLGPHAGAVSHDVFTSSDRFRSGGAPTPHLCDLQGKRLIWGNETRQGECLNVAQIKWLTGGSEISARQLHGEQFSFQPTHLMLLMTNYKPQADARDKAFWERACLI--DFKMRFVDRPKETYERKKDSTLLGRLKAERS----GILAWLVRGCLRWQQVGLNT-PSSVLLWTERYREEEDNLLAFIGDCCIVRP-----DAEVRASELYNAYKEW 874
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: A0A2D5XZC9_9ARCH (SF3 helicase domain-containing protein n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A2D5XZC9_9ARCH) HSP 1 Score: 108 bits (269), Expect = 7.860e-22 Identity = 96/329 (29.18%), Postives = 157/329 (47.72%), Query Frame = 1 Query: 22 LDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIK-AEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSSAFSGYNNYCARQ 1005 LD + + + +NG ++L T TLR R D LT ++IDY+ D+ P Q L +I +P ++E L R+ GY+ TG E+ ++ +G+ A NGK + + VLG + P S A + + G+ ++ + +LRG R+ + E A L ++K +GG ++ R L+ +Q SF P + TN P IK A+ I +RI + F D + P+ + KLR+ P L +V A++WYEGGLG+ P K A + +D L +I + P D IL + + Y ++C + Sbjct: 452 LDRHPHLLNVRNGTIDLRTGTLRDHDRGDWLTHRLDIDYDPDA-EAPRWDQFLPEIFPT------QPEMVEWLQRVCGYAATGETVEQCLIVCVGKGA-NGKSAFWNAIGHVLGPLCGVVPFS---AFEKRAPGSSTADLASLRGKRLCLVQEGEANTTLAESVLKRATGGDLVAARNLYKSQMSFQPEFLIVMATNSAPRIKGADEGIWRRIRLSNWTRFFTE--DERDPW---------LSAKLRDESP--GILRWIVDGARQWYEGGLGDPPVI-KQASRNYRHTSDELAGFIG--MVIVPD---DDGSILGADLMAAYLDWCIEE 750
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: A0A381R4E2_9ZZZZ (SF3 helicase domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381R4E2_9ZZZZ) HSP 1 Score: 105 bits (261), Expect = 8.780e-21 Identity = 83/334 (24.85%), Postives = 156/334 (46.71%), Query Frame = 1 Query: 7 DFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEPAIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEK-PACCKLACDAFAAENDTLQSWINDECELGPREGAD---PALILCSSAFSGYNNYC 996 DF+ +++ N D + +NG ++L T L R D T ++I+++ + + P + + ++DI L +N L +GYSITGH +E+ G NGK ++ LL + G ++ S + + K +AG ++H+ ++ R +DE ++ ++K I+GG + R+L VP TN P +PA+ +R+ +I +A+F + YD N+ H K++ + + L+ V+ A +WY+ G K P K F + + ++++ECEL E +L+L ++ + +YC Sbjct: 501 DFQDMINGNPDSIAVRNGNIDLRTGKLVNRRFDDYNTFFLDIEFD-EFMKTPNMDKFMSDIMLEQEEIINF------LSTFIGYSITGHNKEQKFSVWYGDKGSNGKSVLAKLLDKTFG-EYFTILDSEIFSVKKGTAGTATTHLNYIQDKRFGIMDESNKNEEMNEGLVKRITGGTKLRIRKLHKESELIEVVLVPIILTNFKPKFSNDPALFRRMILIEFEAQF-LDDETDIKYDKNNPRHKWKDSDIDNKISDNEVLSYFVRFATKWYQSGQKLKIPDKIKKYNKKFQHNCNVINKFLDNECELTTDENQKYFTSSLVL----YNKFIDYC 821
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Match: UPI001967E778 (phage/plasmid primase, P4 family n=1 Tax=Streptomyces olivoreticuli TaxID=68246 RepID=UPI001967E778) HSP 1 Score: 103 bits (256), Expect = 3.570e-20 Identity = 96/350 (27.43%), Postives = 157/350 (44.86%), Query Frame = 1 Query: 25 DVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSPRIPEVMQLLTDITLAAPNRLNRPALLERLLRILGYSITGHGREEIIVFLLGRSALNGKGIIESLLQQVLGCMFYQAPQSFLTACKAVSAGAVSSHMMALRGARVVHLDELPAGVALDAQMIKYISGGADISGRELFGTQTSFSPTAVPWANTNEMPIIKAEP-AIMQRIEIIPCDAKFRTPGDAKFPYDANDKTHFIKNTKLRENLPVEAFLAVVVQAAKRWYEGGLGEKPACCKLACDAFAAENDTLQSWINDECELGPREGADPALILCSS-AFSGYNNYC-ARQEPALPPIKKRDMHEQMAAKG 1065 D D+ + +NG V+L T LRP + D+LT A++IDYN + P L +I P PA ++RL +GY ITGH E+ L G+ A NGK ++ + V + P + K+ G + + + ALRGAR+V E +G + ++K ++G IS R L F P+ + TN P +++ + +R++++P F ++ + L E E A V+ A WY GGL + P A + +D L ++ G E AD A+++ + AF+ Y +C A PA +R ++ M +G Sbjct: 403 DNRPDLLNFKNGTVDLRTGRLRPHDQADLLTYALDIDYNPHAT-CPRWESFLAEIFPGMPEM---PAYIQRL---VGYGITGHTTEQSFGVLWGKGA-NGKSVLVDTMTSVFRAITRTTPFATFEERKS---GGIPNDIAALRGARLVMASEGESGKPMSESILKGVTGKDMISARFLRQEFFEFKPSFLLLLATNHKPKFRSQDDGLWRRVKLLPFKRWFAP----------EERDPDLDRKLLAE---AEGIAAWAVRGAMAWYRGGL-QDPQVIMGASQEYRETSDPLAGFLP-----GVLESADEAVVINGNDAFNAYLEWCEAENLPAKEQWTRRSFYDAMEERG 722 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157771 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1589 ID=mRNA_1589|Name=jgi.p|Trimin1|157771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1155bp|location=Sequence derived from alignment at Contig_4:520874..522028+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GACGAGGATTTTGAAAAGCTACTTGACGTCAACAAGGACATATTCAGCTGback to top protein sequence of jgi.p|Trimin1|157771 >Trimin1|157771|e_gw1.4.308.1 ID=Trimin1|157771|e_gw1.4.308.1|Name=jgi.p|Trimin1|157771|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=385bp DEDFEKLLDVNKDIFSCQNGVVELATATLRPRVRKDMLTRAVNIDYNADSback to top mRNA from alignment at Contig_4:520874..522028+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1589 ID=mRNA_1589|Name=jgi.p|Trimin1|157771|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1155bp|location=Sequence derived from alignment at Contig_4:520874..522028+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_4:520874..522028+ >mRNA_1589 ID=mRNA_1589|Name=jgi.p|Trimin1|157771|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1155bp|location=Sequence derived from alignment at Contig_4:520874..522028+ (Tribonema minus UTEX_B_3156 )back to top |