mRNA_15827 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177605
Unique NamemRNA_15827
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A836CKJ0_9STRA (p-glycoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ0_9STRA)

HSP 1 Score: 563 bits (1450), Expect = 2.450e-202
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1 
Query:    1 MSLASGPFSVDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQATACDGTGAATAE 876
            MSLASGPFSVDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQATACDGTGAATAE
Sbjct:    1 MSLASGPFSVDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQATACDGTGAATAE 292
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A836CNL1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL1_9STRA)

HSP 1 Score: 317 bits (811), Expect = 3.770e-95
Identity = 168/285 (58.95%), Postives = 210/285 (73.68%), Query Frame = 1 
Query:    4 SLASGPFSVDPLSKGGARPV-KVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQATACDG 855
            +L +    +DPLS GGARPV +  GAI++ +V F YPTRP+  V G       G G   GFSL+I AGE VALVG SG+ KST + LL+RFY+ ++G V LDGR+  +LNVHWLRSQ+GYVGQEPVLF+ SI +NIARG    T EE+++ ARAAN H+F+    + Y+T+VG KS LLSGGQKQRIAIA AI+K+PAI+LLDEATSALD+E + QVQAALDRLR L KRTTL++AHRLST+RNAD IAV   GC+ E GSH  L+S    +Y  L+++ TA  G
Sbjct: 1267 ALVNDELKIDPLSDGGARPVVRAQGAIAYRNVHFTYPTRPEQAVYG-------GAGAPEGFSLDIGAGEMVALVGPSGSGKSTCIALLMRFYDVSEGSVELDGRNVKELNVHWLRSQVGYVGQEPVLFTGSIRDNIARGHPSATAEEIESAARAANAHDFVTAFAEGYDTDVGEKSALLSGGQKQRIAIARAILKNPAILLLDEATSALDNESERQVQAALDRLRALQKRTTLVVAHRLSTIRNADKIAVVTGGCVRELGSHDDLVSLPGGLYASLYNRQTAAFG 1544
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A836CDG9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG9_9STRA)

HSP 1 Score: 311 bits (796), Expect = 6.170e-94
Identity = 160/280 (57.14%), Postives = 205/280 (73.21%), Query Frame = 1 
Query:    4 SLASGPFSVDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQAT 843
            +L   P  +DPLS+GGA+P ++SGA+SF+++ FAYPTRP+  + G PL   G       FSLE+ AGETVALVG SG  KST + LL+RFY+P  G + +DGR+  +LNVHWLRS IGYVGQEPVLF+ +I ENI RG    + EEV+  A+AAN HEFI+     Y+TNVG KS LLSGGQKQRIAIA AI+++PAI+LLDEATSALD+E + QVQ ALD L+ L +RTTL++AHRL+TV NAD IAV   G +CE G+H +L++   S Y  L+ + T
Sbjct:  951 ALEDEPLKIDPLSEGGAKPERLSGAVSFSNIKFAYPTRPEQWIYGGPLAPEG-------FSLEVAAGETVALVGPSGGGKSTCISLLMRFYDPASGTILVDGRNVQELNVHWLRSNIGYVGQEPVLFTGTIRENITRGNPDASTEEVERAAKAANAHEFIKSFEHGYDTNVGEKSALLSGGQKQRIAIARAILRNPAILLLDEATSALDNESERQVQMALDHLQSLQRRTTLVVAHRLTTVHNADKIAVLGGGKVCELGTHDELMALPGSNYAKLYRRQT 1223
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA)

HSP 1 Score: 308 bits (790), Expect = 4.070e-93
Identity = 159/274 (58.03%), Postives = 201/274 (73.36%), Query Frame = 1 
Query:   22 FSVDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQAT 843
            F +DPL  GGA+P ++SGAISF ++ F+YPTRP+  + G PL   G       FSLE+ AGETVALVG SG  KST + LL+RFY+P  G + +DGR   +LNVHWLRS IGYVGQEPVLF+ +I ENI +G    T+EEV+  ARAAN H+FI   TD YET+VG KS LLSGGQKQRIAIA AI+++P I+LLDEATSALD+E + QVQAALD L+ L +RTTL++AHRL+T+RNAD IAV   G + E G+H +L++   S Y  L+ + T
Sbjct:  950 FKIDPLGAGGAKPERLSGAISFKNIKFSYPTRPEQPIYGGPLAPDG-------FSLEVAAGETVALVGPSGGGKSTCISLLMRFYDPASGSILVDGRSVQELNVHWLRSNIGYVGQEPVLFTGTIKENITKGNPDATMEEVENAARAANAHDFIMSFTDGYETDVGEKSALLSGGQKQRIAIARAILRNPNILLLDEATSALDNESERQVQAALDHLQSLQRRTTLVVAHRLTTIRNADKIAVLGTGAVRELGTHDELMATPGSTYGKLYRRQT 1216
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA)

HSP 1 Score: 304 bits (779), Expect = 4.250e-91
Identity = 158/280 (56.43%), Postives = 205/280 (73.21%), Query Frame = 1 
Query:    4 SLASGPFSVDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQAT 843
            +L      +DPL +GGA+P ++SGAISF ++ FAYPTR +  + G PL   G       FSLE+ AG+TVALVGASG+ KST + LL+RFY+   G + +DGRD  +LN+HWLRS +GYVGQEPVLF+ +I +NI +G    T+EEV+   RAAN H+FI   TD YET+VG KS LLSGGQKQRIAIA AI+++P I+LLDEATSALD+E + QVQAALDRL+ L +RTTL++AHRL+T+RNAD IAV   GC+ E G+H +L++   S Y  L+ Q T
Sbjct: 1088 ALCDAELKIDPLGEGGAKPERLSGAISFKNIKFAYPTRLEQPIYGGPLAPEG-------FSLEVAAGDTVALVGASGSGKSTCVSLLMRFYDVGDGRIEVDGRDVRELNIHWLRSNMGYVGQEPVLFTGTIRDNITKGNPDATVEEVENATRAANAHDFIMSFTDGYETDVGEKSALLSGGQKQRIAIARAILRNPNIVLLDEATSALDNESERQVQAALDRLQSLQRRTTLVVAHRLTTIRNADKIAVLGGGCVRELGTHNELMALPGSTYGKLYRQQT 1360
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A835YKK6_9STRA (Multidrug resistance protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKK6_9STRA)

HSP 1 Score: 267 bits (683), Expect = 2.000e-87
Identity = 140/156 (89.74%), Postives = 144/156 (92.31%), Query Frame = 1 
Query:  322 KLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHA 789
            +LNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQA ARAANVHEFIE LTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLII    +  +    +AVPQDGCICERGSHA
Sbjct:    3 QLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQAAARAANVHEFIEELTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIC---APSKRGTHLAVPQDGCICERGSHA 155
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A835ZHI0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI0_9STRA)

HSP 1 Score: 278 bits (711), Expect = 3.170e-84
Identity = 158/288 (54.86%), Postives = 197/288 (68.40%), Query Frame = 1 
Query:    4 SLASGPFSVDPLSKGGARP-VKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPT---KGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQATACDG 855
            +L      +DPLS GGARP V+   AI++ +V F YPTRP+  V G       G G   GFSL+  AGE  ALVG SG+ KST + LL+R Y+ +   +G V LDG +  +LNVHWLRSQ+GYVGQEPVLF+ SI +NIARG    T EE+++ ARAAN H+F+    + Y+T+VG KS LLSGGQKQRIAIA AI+K+PAI+LLDEATSALD+E + QVQAALD LR L K TTL++AHRLST+RNAD IAV         GSH  L+  S  +Y  L++  TA  G
Sbjct:  531 ALVDDELKIDPLSDGGARPIVRAQSAIAYRNVHFTYPTRPEQAVYG-------GAGAPEGFSLDTGAGEMAALVGPSGSGKSTCIVLLMRCYDVSDVSEGSVELDGCNVKELNVHWLRSQVGYVGQEPVLFTGSIRDNIARGHPSATAEEIESAARAANAHDFVTAFAEGYDTDVGEKSALLSGGQKQRIAIARAILKNPAILLLDEATSALDNESERQVQAALDCLRALQKCTTLVVAHRLSTIRNADKIAV--------LGSHDDLVILSGGLYASLYNHQTAAFG 803
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 2.340e-82
Identity = 149/279 (53.41%), Postives = 195/279 (69.89%), Query Frame = 1 
Query:    7 LASGPFSVDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQAT 843
            L   P ++DPLS+ GARP   +GA+ F ++ FAYP+RP+  + G            +GF L++ AGETVALVG SG  KST M LLLRFYE +KG V +DGRD  ++NV WLRSQIGYVGQEPVLF  +I ENIA+G  G + + +Q  A+AAN H+FI    + Y+ +VG KS LLSGGQKQRIAIA AI+ +P I+LLDEATSALD+E +  VQ ALD+L+   KRTTL +AHRL+T+RN+D IAV   G + E G+H +L++    +Y+ L +Q T
Sbjct:  928 LTDEPLNIDPLSEEGARPATTNGAVEFKNIFFAYPSRPNMQIYGSDK-------YPQGFCLDVAAGETVALVGPSGGGKSTCMGLLLRFYEASKGSVTIDGRDIKEVNVKWLRSQIGYVGQEPVLFQGTIRENIAKGDPGASDDRIQEAAKAANAHDFIMDFQEGYDADVGEKSALLSGGQKQRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAVLNGGGVQELGTHDELLA-LKGLYSTLWNQQT 1198
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A8B7PSV4_HIPAR (phosphatidylcholine translocator ABCB4-like n=1 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7PSV4_HIPAR)

HSP 1 Score: 258 bits (658), Expect = 2.260e-81
Identity = 141/273 (51.65%), Postives = 186/273 (68.13%), Query Frame = 1 
Query:   28 VDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTL--EEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQA 840
            +D  S+ G RP K  G ++FN+V+F YPTRP+  VL             +G SLE+K G+T+ALVG+SG  KST +QLL RFY+P  G V LDG++  KLN+ WLR+Q+G V QEP+LF  SI ENIA G     +  EE+ + A+AAN+H FIE L  KYET VG +   LSGGQKQRIAIA A+I+ P I+LLDEATSALD+E +  VQ ALD+ R    RT ++IAHRLST++NAD IAV Q+G + E G+H +L++     ++M+  QA
Sbjct:   70 IDSYSEEGLRPSKFEGNVTFNEVVFNYPTRPNVSVL-------------QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLTGKVLLDGQEAKKLNIQWLRAQLGIVSQEPILFDYSIAENIAYGDNSRVVSQEEIVSAAKAANIHSFIETLPQKYETRVGDRGTQLSGGQKQRIAIARALIRQPRILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLSTIQNADLIAVFQNGSVREHGTHQQLLAQKGIYFSMVSVQA 327
[Close]
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Match: A0A4Y2V5E0_ARAVE (Multidrug resistance protein 1 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2V5E0_ARAVE)

HSP 1 Score: 261 bits (668), Expect = 1.160e-80
Identity = 144/275 (52.36%), Postives = 185/275 (67.27%), Query Frame = 1 
Query:   28 VDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLERSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVALDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQATARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIMLLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAVPQDGCICERGSHAKLISGSSSVYTMLHDQATACD 852
            +D  SK G +P K+ G+++F DV F YP RPD  VL             +G SL +K GET+ALVG SG  KST +QL+LRFY+  +G V +D  +   LNV WLRS IG+VGQEPVLFST+I ENI  GK   TL+E++  A+ ANVH+FI  L  KY+T VG +   LSGGQKQRIA+A A+IK+P ++LLDEATSALD+E +A VQ+ALD+ R    RTT+I+AHRLST+RNAD I V  DG I E GSH +L+      Y ++  Q +  D
Sbjct:  105 IDSSSKVGEKPDKLDGSLTFADVHFNYPARPDVPVL-------------KGISLSVKPGETIALVGPSGCGKSTIIQLILRFYDAIEGSVEIDENNVKALNVGWLRSNIGFVGQEPVLFSTTIEENIRYGKNDATLKEIEEAAKLANVHDFISNLPQKYDTLVGDRGTQLSGGQKQRIAVARALIKNPKLLLLDEATSALDTENEAIVQSALDQAR--KGRTTIIVAHRLSTIRNADKIFVLSDGAIKEIGSHDELMERKGLYYQLVLSQTSETD 364
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177605 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKJ0_9STRA2.450e-202100.00p-glycoprotein n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A836CNL1_9STRA3.770e-9558.95P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CDG9_9STRA6.170e-9457.14ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A836CGZ9_9STRA4.070e-9358.03ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A835Z4J1_9STRA4.250e-9156.43ATP-binding cassette, sub-family B, member 1A n=2 ... [more]
A0A835YKK6_9STRA2.000e-8789.74Multidrug resistance protein 4 n=1 Tax=Tribonema m... [more]
A0A835ZHI0_9STRA3.170e-8454.86P-loop containing nucleoside triphosphate hydrolas... [more]
D7FHL4_ECTSI2.340e-8253.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8B7PSV4_HIPAR2.260e-8151.65phosphatidylcholine translocator ABCB4-like n=1 Ta... [more]
A0A4Y2V5E0_ARAVE1.160e-8052.36Multidrug resistance protein 1 (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_155contigContig_155:38673..41601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177605|e_gw1.155.12.1
KEGG TC3.A.1.201
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
KEGG koko:K05658
EC3.6.3.44
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota
Evalue3.83e-83
Seed ortholog2880.D7FHL4
Hectar predicted targeting categoryother localisation
TranscriptId177927
TrackFilteredModels1
ProteinId177605
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177605gene_15827Tribonema minus UTEX_B_3156 geneContig_155 38673..41601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177605Trimin1|177605|e_gw1.155.12.1Tribonema minus UTEX_B_3156 polypeptideContig_155 38673..41601 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15827_5exon_15827_5Tribonema minus UTEX_B_3156 exonContig_155 38673..38944 -
exon_15827_4exon_15827_4Tribonema minus UTEX_B_3156 exonContig_155 40060..40342 -
exon_15827_3exon_15827_3Tribonema minus UTEX_B_3156 exonContig_155 40464..40471 -
exon_15827_2exon_15827_2Tribonema minus UTEX_B_3156 exonContig_155 40992..41088 -
exon_15827_1exon_15827_1Tribonema minus UTEX_B_3156 exonContig_155 41383..41601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15827CDS_15827Tribonema minus UTEX_B_3156 CDSContig_155 41383..41601 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15827 ID=mRNA_15827|Name=jgi.p|Trimin1|177605|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_155:38673..41601- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTGGCAAGCGGCCCCTTCTCTGTGGACCCACTCAGCAAAGGGGG
GGCAAGGCCCGTCAAGGTGTCCGGTGCCATCAGCTTCAACGATGTGCTGT
TTGCATATCCCACGCGCCCGGATGCGCTTGTTCTCGGACGACCGCTAGAA
CGCAGCGGTGGAGGAGGGCAGAGGCGCGGTTTCAGCCTGGAGATCAAGGC
CGGAGAGACGGTCGCTCTGGTAGGAGCATCTGGAGCTATCAAGTCAACGG
GCATGCAGCTGCTCCTCAGGTTTTATGAGCCCACCAAGGGGGTTGTGGCA
CTGGACGGCCGTGACGACTCAAAACTCAATGTGCACTGGCTCCGTAGCCA
GATTGGGTACGTGGGCCAGGAGCCTGTCTTATTTAGTACAAGCATCTTTG
AGAACATAGCGAGGGGCAAGGAGGGGCCCACCTTGGAAGAGGTTCAGGCG
ACTGCCCGGGCTGCAAACGTCCATGAATTCATCGAAGGACTCACGGACAA
GTACGAGACGAATGTGGGCAGCAAGAGCTGCCTGCTCTCGGGCGGTCAGA
AGCAGCGCATTGCCATTGCAGGCGCCATCATCAAGGATCCAGCCATCATG
CTTCTAGACGAGGCCACCAGTGCATTGGACAGCGAGAGACAGGCACAGGT
GCAAGCGGCGCTGGACCGACTGCGGATGCTCAGCAAGCGGACGACGCTGA
TCATTGCGCACCGTCTAAGTACGGTACGCAATGCCGACTCAATAGCGGTG
CCGCAGGATGGCTGCATCTGCGAGCGGGGCTCTCATGCTAAGCTCATCAG
CGGCAGCAGCTCTGTGTACACCATGCTGCACGATCAAGCAACGGCCTGTG
ATGGCACCGGCGCAGCAACTGCTGAATGA
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protein sequence of jgi.p|Trimin1|177605

>Trimin1|177605|e_gw1.155.12.1 ID=Trimin1|177605|e_gw1.155.12.1|Name=jgi.p|Trimin1|177605|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp
MSLASGPFSVDPLSKGGARPVKVSGAISFNDVLFAYPTRPDALVLGRPLE
RSGGGGQRRGFSLEIKAGETVALVGASGAIKSTGMQLLLRFYEPTKGVVA
LDGRDDSKLNVHWLRSQIGYVGQEPVLFSTSIFENIARGKEGPTLEEVQA
TARAANVHEFIEGLTDKYETNVGSKSCLLSGGQKQRIAIAGAIIKDPAIM
LLDEATSALDSERQAQVQAALDRLRMLSKRTTLIIAHRLSTVRNADSIAV
PQDGCICERGSHAKLISGSSSVYTMLHDQATACDGTGAATAE*
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mRNA from alignment at Contig_155:38673..41601-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15827 ID=mRNA_15827|Name=jgi.p|Trimin1|177605|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2929bp|location=Sequence derived from alignment at Contig_155:38673..41601- (Tribonema minus UTEX_B_3156 )
ATGTCGCTGGCAAGCGGCCCCTTCTCTGTGGACCCACTCAGCAAAGGGGG
GGCAAGGCCCGTCAAGGTGTCCGGTGCCATCAGCTTCAACGATGTGCTGT
TTGCATATCCCACGCGCCCGGATGCGCTTGTTCTCGGACGACCGCTAGAA
CGCAGCGGTGGAGGAGGGCAGAGGCGCGGTTTCAGCCTGGAGATCAAGGC
CGGAGAGACGGTCGCTCTGGTGAGTCTAGGGGGGGGGGGGGGGGGCTCAA
TGAGCATTGCTTGGTGTCTTGGCCTTTCAGGCACAAGCCATCGGGTTTTG
TTGAAGCCTTGGTGCCCTGCTTGAACCGTAGACATGCCGTGCACTGCAGT
TATGCGAGATCGTCAATGACTGCACTTGCGACAATGATGCAGCATCTCTA
TATGCTGCTACATATGCTCCGTTGATTCTTTGACTGTGGATCACATTCAA
GTTGTCGTGAAGCTCAGCACAAGAGTACCTTGCTGACCGTGTGGTGCGCT
CTTTCCACTGTAGGTAGGAGCATCTGGAGCTATCAAGTCAACGGGCATGC
AGCTGCTCCTCAGGTTTTATGAGCCCACCAAGGGGGTTGTGGCACTGGAC
GGCCGTGACGGTGAGGCAAACTTGAACTGTCGCAAGCGAGAGTACTGTAC
ACTTTGTATCATTGCATGATCATGTGTGACGACAAGAGAATCGCCAAGAA
TGTGAAATGCCGATACCGGACGAGCAGCATTCTCGCCATGTGCAGTGTGC
TTGGAGGAGGTGCTGGCTGGCCAACTCCTCCAAGTGCCCAATGACGCCTT
ATCAGCAACTCAGTAATCCAGCAGTTCAATGACCCCTGGCTGTGCAAACC
TTGGCTTACTGCCTGCTGTGCTATCGCTGCCTGCCAGCCACCGTTCTGTG
CTGCTCACTGCTGCATAAATGCGTCCAGAAGCTCATTGCATCATCCGCAC
TGGCGTGCAGTGCTGTCACCAAGCCATTGCCAGGACCCTGTGCCACTTGA
TCTACACATTGATGTGCTGGGTCATGTAAGTGTTTTGTGAGACAGAGCTG
GCATTCCACCCCTGTCAGTCTGTTGGCGCCGTTTGCATATCAGTGACTAC
AAACTCAAAAGTTAAGGCCAACCCTTACAGACTCAAAAGTCAAGGCCATT
AGTTCTCGTGGTGCTTTGATTGCGCTCACATCGCTCCCTTCCTTGACTTA
ACAACGCTCGTATATGCTGCGCCTTCTGCTTGCTACTCCATGCTTCCATG
GTCCGGCAGCTCAATGTGCACTGGCTCCGTAGCCAGATTGGGTACGTGGG
CCAGGAGCCTGTCTTATTTAGTACAAGCATCTTTGAGAACATAGCGAGGG
GCAAGGAGGGGCCCACCTTGGAAGAGGTTCAGGCGACTGCCCGGGCTGCA
AACGTCCATGAATTCATCGAAGGACTCACGGACAAGTACGAGACGAATGT
GGGCAGCAAGAGCTGCCTGCTCTCGGGCGGTCAGAAGCAGCGCATTGCCA
TTGCAGGCGCCATCATCAAGGATCCAGCCATCATGCTTCTAGGTCAGTAC
GGCAGATCAGTCGTTTGTGGCAACTCTGCATGTTGACCAAGGTTTGTGTG
CGTTTTGCATTGACTTGTTTGTGAGGCGATTCACGTCTAAACTTCCAAAT
TCAGAGAAGGGAACAAACATGATTCGTTGATACTGCAGACCATGCACCTC
TGCATGATGTACCTCACAATAGTGTCAAGGAACATCAGCATTCACATCGC
CCGACTTTGCAAGCCTAGTTGTGATTCGGAATCTCGGTCGGCAGACGCTT
CACGTTATTAACTACGAGAAAAGGCAATAGCGGCCCTTTGTTGCAATGCG
CTGCGCTGCAGGCTATCAAATACTGCCAGAATGTCTTGCTCGCTCAGCAA
ACTTAAGTCTGTCATCACGCATGTGATGTGATGCTTGTGGTAACCCTGGC
TCACCACTGAGCTAAAAAGCTTGTGCATACTTGGCAGGGTAGCCGTCCCC
TTCTGGGGTGCCAGGATACCACCTGCTCCAGTTGAAATACGCATGGCTGT
GTGCTGTATCACTGCAATTACTCAAGACGTCCGTGTGACACAACGAGAGG
CACAAGTACATGCAGATGGTGTCAGCAAGCCCCCGGGGCCCAATGTCAGA
CCTTGAGGTTGAATCGCCAATGTCGTGTAAACGGCGAACAGTGTCAGCTA
TACTGATGTAAAGCTGTATTCACTGCCCTCTAAGAGGTATCTCGCTTCTC
AAAAGGCTAAAGGCACAGCCAAGGCACAAAAAGATTGTGGCTCAGGCGAG
TGCCACATTAACTTGAACGTCAGATTTCAAAGTAGCATATCTACTGTTGC
CGAGTGCTGCACCTGTTGCATCCAATGCAACTTGAAGCAGCGGCGCCTAG
TGTTTGAGTTATAGCGAGGACGCACCGCAATGTGCAGGCCCCTGCCGGTT
TCACCATTCAGCAAACTCTCATCAGTGGTCTAGGGTAAGGGTAAAAGTTC
AGTGTATGTGTAACATTAGGGAAGGTGACTGTCACTGTGGCACACCGCAC
CGCATCAGTTCAATTGCAACTTTTTCCTCAACAAGTGATGCTATGTCATG
ACCTGTGTCTAACGCTGATGTGATCATTTGGTTTCCGTGTTGCCGCATGT
GCTCCAGACGAGGCCACCAGTGCATTGGACAGCGAGAGACAGGCACAGGT
GCAAGCGGCGCTGGACCGACTGCGGATGCTCAGCAAGCGGACGACGCTGA
TCATTGCGCACCGTCTAAGTACGGTACGCAATGCCGACTCAATAGCGGTG
CCGCAGGATGGCTGCATCTGCGAGCGGGGCTCTCATGCTAAGCTCATCAG
CGGCAGCAGCTCTGTGTACACCATGCTGCACGATCAAGCAACGGCCTGTG
ATGGCACCGGCGCAGCAACTGCTGAATGA
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Coding sequence (CDS) from alignment at Contig_155:38673..41601-

>mRNA_15827 ID=mRNA_15827|Name=jgi.p|Trimin1|177605|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_155:38673..41601- (Tribonema minus UTEX_B_3156 )
ATGTCGCTGGCAAGCGGCCCCTTCTCTGTGGACCCACTCAGCAAAGGGGG
GGCAAGGCCCGTCAAGGTGTCCGGTGCCATCAGCTTCAACGATGTGCTGT
TTGCATATCCCACGCGCCCGGATGCGCTTGTTCTCGGACGACCGCTAGAA
CGCAGCGGTGGAGGAGGGCAGAGGCGCGGTTTCAGCCTGGAGATCAAGGC
CGGAGAGACGGTCGCTCTGGTAGGAGCATCTGGAGCTATCAAGTCAACGG
GCATGCAGCTGCTCCTCAGGTTTTATGAGCCCACCAAGGGGGTTGTGGCA
CTGGACGGCCGTGACGACTCAAAACTCAATGTGCACTGGCTCCGTAGCCA
GATTGGGTACGTGGGCCAGGAGCCTGTCTTATTTAGTACAAGCATCTTTG
AGAACATAGCGAGGGGCAAGGAGGGGCCCACCTTGGAAGAGGTTCAGGCG
ACTGCCCGGGCTGCAAACGTCCATGAATTCATCGAAGGACTCACGGACAA
GTACGAGACGAATGTGGGCAGCAAGAGCTGCCTGCTCTCGGGCGGTCAGA
AGCAGCGCATTGCCATTGCAGGCGCCATCATCAAGGATCCAGCCATCATG
CTTCTAGACGAGGCCACCAGTGCATTGGACAGCGAGAGACAGGCACAGGT
GCAAGCGGCGCTGGACCGACTGCGGATGCTCAGCAAGCGGACGACGCTGA
TCATTGCGCACCGTCTAAGTACGGTACGCAATGCCGACTCAATAGCGGTG
CCGCAGGATGGCTGCATCTGCGAGCGGGGCTCTCATGCTAAGCTCATCAG
CGGCAGCAGCTCTGTGTACACCATGCTGCACGATCAAGCAACGGCCTGTG
ATGGCACCGGCGCAGCAACTGCTGAATGA
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