mRNA_15824 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152385
Unique NamemRNA_15824
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: A0A835Z7U2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U2_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.460e-56
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
Query:    1 PAMEAAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            PAMEAAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR
Sbjct:    1 PAMEAAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 86          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: D8LS26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS26_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.850e-17
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   19 EAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            E AKA G +AW+ GD+D A+ CFS+AI+L      ++  L V+YSNRSAA+LKQ    +AL+DAE+C  ++ +WAKG  R
Sbjct:   68 EEAKARGGEAWKAGDVDGAIVCFSKAIEL--DMDNTSGQLHVHYSNRSAAFLKQNKATEALMDAERCVEVNPSWAKGYSR 145          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: A0A7S3XQR5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQR5_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 1.970e-16
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    7 MEAAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            M   EA KA GN+A++  +  +A++CF+ AIDL        ++  V+YSNRSAAYLK GD  KAL+DA++C  L   W +G  R
Sbjct:   27 MSTPEAEKAKGNEAFKAQNWAQAIKCFTAAIDLDVDNASGQSH--VFYSNRSAAYLKYGDATKALVDADECVALKPDWPRGHAR 108          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: A0A8K1CDE6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDE6_PYTOL)

HSP 1 Score: 77.0 bits (188), Expect = 1.250e-14
Identity = 44/85 (51.76%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   13 AAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAE---GEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            AAE AK  GN A+  G+  +A+  FS AI L E     G     L VYYSNRSA+YLK GDG  AL DA+KC  L   WAKG  R
Sbjct:    2 AAEQAKDRGNRAFAAGNHRDAIASFSEAIALHERAAANGEVGGKLYVYYSNRSASYLKLGDGQNALKDADKCVALKRDWAKGYSR 86          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: W7TJK4_9STRA (Stress-induced protein sti1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJK4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.660e-14
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   16 AEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAE-----GEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            AE  KAAGN A +  D DEA++C+++A++++      GEG +  +  VY+SNRSAAYL +GD   AL DAE+C   + TW KG  R
Sbjct:    6 AETHKAAGNKALQAKDYDEAIKCYTQALEVSAALPVTGEGAAPRH--VYFSNRSAAYLSKGDAAAALEDAEQCIKANPTWPKGFSR 89          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: A0A5D6XYW2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYW2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.170e-13
Identity = 43/82 (52.44%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   13 AAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            AA+ AK  GN A+  G    AV  FS AI L    G   A+  VY+SNRSAAYLK GDG  AL DAE+C  L   WAKG  R
Sbjct:    2 AADQAKDRGNRAFAAGSYANAVSEFSEAIALHARSGEGQAH--VYFSNRSAAYLKLGDGAAALADAEQCVALRRDWAKGYSR 81          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: A0A7S4N079_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N079_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.360e-13
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 MEAAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            M  A+  K  GN A + G+  EA+ C+++AIDL     GSN    VYYSNRSAAYLK+GDG  AL DA  C  L+  +AKG  R
Sbjct:    1 MATADEWKGKGNQALQSGNATEAIECYTKAIDL----DGSNH---VYYSNRSAAYLKKGDGNNALEDAGSCVALNPNFAKGYSR 77          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: A0A024FZF4_9STRA (EF-hand domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZF4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.320e-13
Identity = 43/86 (50.00%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   19 EAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGE---GGS---NANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            E AK  GN A+  G   +A+  F  AI + E E   GGS    + L VYYSNRSA YLK  DG+KAL DAEKC  L+  W KG  R
Sbjct:    4 EQAKNRGNKAFSAGSYRDAIASFDEAIAIYEREELKGGSITGPSKLYVYYSNRSACYLKINDGLKALKDAEKCIALNPDWPKGYSR 89          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: F0W3C7_9STRA (Uncharacterized protein AlNc14C12G1504 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3C7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.070e-13
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   13 AAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGE--GGS---NANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            A E AK  GN A+  G   +A+  F+ AI L E E  GGS   +  L VY+SNRSA YLK  DG +AL DAEKC  L   W KG  R
Sbjct:    2 ACEQAKDRGNKAFSAGSYQDAITSFTEAIALYEREASGGSCPTSGKLYVYFSNRSACYLKINDGAQALKDAEKCIALKADWPKGYSR 88          
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Match: A0A7S0REG6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0REG6_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 1.440e-12
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   25 AKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYYSNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR 258
            AK  G  A++ G    A R FS AI  A   G S+ NL VYYSNR AAYL  G+  +AL+DAE+CT L+ +WAKG  R
Sbjct:    9 AKERGLAAYKQGQFQVAAREFSTAISHA---GPSDDNLHVYYSNRCAAYLNMGNVDQALMDAEECTRLNPSWAKGWSR 83          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152385 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7U2_9STRA2.460e-56100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LS26_ECTSI1.850e-1750.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3XQR5_HETAK1.970e-1645.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K1CDE6_PYTOL1.250e-1451.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7TJK4_9STRA2.660e-1446.51Stress-induced protein sti1 n=2 Tax=Monodopsidacea... [more]
A0A5D6XYW2_9STRA2.170e-1352.44Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S4N079_9STRA2.360e-1350.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A024FZF4_9STRA3.320e-1350.00EF-hand domain-containing protein n=1 Tax=Albugo c... [more]
F0W3C7_9STRA4.070e-1349.43Uncharacterized protein AlNc14C12G1504 n=1 Tax=Alb... [more]
A0A7S0REG6_9CHLO1.440e-1251.28Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_155contigContig_155:11629..11886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152385|gw1.155.24.1
Descriptionpositive regulation of catalytic activity in other organism involved in symbiotic interaction
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0457@1|root,KOG0548@2759|Eukaryota
Evalue3.03e-18
Seed ortholog2880.D8LS26
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-08_001880.1
TranscriptId152707
TrackFilteredModels1
ProteinId152385
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152385gene_15824Tribonema minus UTEX_B_3156 geneContig_155 11629..11886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15824_1exon_15824_1Tribonema minus UTEX_B_3156 exonContig_155 11629..11886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15824CDS_15824Tribonema minus UTEX_B_3156 CDSContig_155 11629..11886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152385Trimin1|152385|gw1.155.24.1Tribonema minus UTEX_B_3156 polypeptideContig_155 11629..11886 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15824 ID=mRNA_15824|Name=jgi.p|Trimin1|152385|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_155:11629..11886+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGCCATGGAGGCAGCGGAGGCAGCCAAAGCAGCGGGAAATGACGCGTG
GCGACTGGGAGATCTTGATGAAGCAGTGCGCTGTTTCTCGAGGGCGATAG
ATCTGGCAGAAGGCGAAGGCGGCAGCAATGCCAATCTGCCGGTGTATTAC
TCCAACCGGAGCGCAGCTTATCTGAAGCAGGGAGATGGAGTCAAGGCGCT
TCTGGACGCTGAGAAGTGCACGACTCTGGATGAGACTTGGGCCAAAGGTG
AGCGAAGA
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protein sequence of jgi.p|Trimin1|152385

>Trimin1|152385|gw1.155.24.1 ID=Trimin1|152385|gw1.155.24.1|Name=jgi.p|Trimin1|152385|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp
PAMEAAEAAKAAGNDAWRLGDLDEAVRCFSRAIDLAEGEGGSNANLPVYY
SNRSAAYLKQGDGVKALLDAEKCTTLDETWAKGERR
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mRNA from alignment at Contig_155:11629..11886+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15824 ID=mRNA_15824|Name=jgi.p|Trimin1|152385|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_155:11629..11886+ (Tribonema minus UTEX_B_3156 )
CCGGCCATGGAGGCAGCGGAGGCAGCCAAAGCAGCGGGAAATGACGCGTG GCGACTGGGAGATCTTGATGAAGCAGTGCGCTGTTTCTCGAGGGCGATAG ATCTGGCAGAAGGCGAAGGCGGCAGCAATGCCAATCTGCCGGTGTATTAC TCCAACCGGAGCGCAGCTTATCTGAAGCAGGGAGATGGAGTCAAGGCGCT TCTGGACGCTGAGAAGTGCACGACTCTGGATGAGACTTGGGCCAAAGGTG AGCGAAGA
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Coding sequence (CDS) from alignment at Contig_155:11629..11886+

>mRNA_15824 ID=mRNA_15824|Name=jgi.p|Trimin1|152385|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=258bp|location=Sequence derived from alignment at Contig_155:11629..11886+ (Tribonema minus UTEX_B_3156 )
CCGGCCATGGAGGCAGCGGAGGCAGCCAAAGCAGCGGGAAATGACGCGTG
GCGACTGGGAGATCTTGATGAAGCAGTGCGCTGTTTCTCGAGGGCGATAG
ATCTGGCAGAAGGCGAAGGCGGCAGCAATGCCAATCTGCCGGTGTATTAC
TCCAACCGGAGCGCAGCTTATCTGAAGCAGGGAGATGGAGTCAAGGCGCT
TCTGGACGCTGAGAAGTGCACGACTCTGGATGAGACTTGGGCCAAAGGTG
AGCGAAGA
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