mRNA_15770 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136458
Unique NamemRNA_15770
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: A0A835Z6K2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6K2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.240e-31
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER
Sbjct:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 53
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: A0A835Z544_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z544_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.820e-22
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            KR+ERWS +EH+ FL+AM +HGRDWK IK  LPTR+LTQVRTHAYWYL+K+ER
Sbjct:    4 KRAERWSSDEHRVFLKAMTQHGRDWKKIKAQLPTRTLTQVRTHAYWYLAKVER 56
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: A0A1E7FY50_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY50_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.600e-11
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 RWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            RW+ EEHQAFL+ +K+ GR+WK +   +PTR+  Q+R+HA  Y SKL+R
Sbjct:    1 RWTQEEHQAFLEGLKDCGREWKKVSLRIPTRTSAQIRSHAQKYFSKLQR 49
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: A0A7S3FIK9_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FIK9_9VIRI)

HSP 1 Score: 61.6 bits (148), Expect = 1.570e-10
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            K+ ERW+DEEH+ FLQA+K HGR W+ I+  + T++  Q+R+HA  + +KLER
Sbjct:   36 KQRERWTDEEHEKFLQALKVHGRAWRRIEECVGTKTAVQIRSHAQKFFTKLER 88
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: A0A7S2XTJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTJ5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.050e-10
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 RWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            RW+ EEHQAFL+ +K HGR+WK + + +PTR+  Q+R+HA  Y +KL R
Sbjct:  270 RWTAEEHQAFLEGLKIHGREWKKVAQGIPTRNSAQIRSHAQKYFAKLTR 318
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: C1FFH0_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FFH0_MICCC)

HSP 1 Score: 61.6 bits (148), Expect = 9.730e-10
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            K+ ERW++EEH+ FL+A+K HGR WK I+  + T+S  Q+R+HA  + SKL+R
Sbjct:   97 KQRERWTEEEHEGFLEALKLHGRAWKKIEEHIGTKSAVQIRSHAQKFFSKLQR 149
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: A8JHC0_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JHC0_CHLRE)

HSP 1 Score: 58.2 bits (139), Expect = 1.060e-9
Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            KR ERW+D+EHQ F++A+K +GR W+ I+  + T++  Q+R+HA  Y +KLE+
Sbjct:   30 KRRERWTDDEHQRFVEALKLYGRAWRKIEEYVGTKTAVQIRSHAQKYFNKLEK 82
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: A8HVC6_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HVC6_CHLRE)

HSP 1 Score: 57.8 bits (138), Expect = 1.070e-9
Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            K+ ERW+DEEH  FL+A+K +GR W+ I+  + T++  Q+R+HA  +++KLER
Sbjct:   10 KQRERWTDEEHARFLEALKLYGRAWRKIEEHVSTKTAVQIRSHAQKFINKLER 62
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: D8R014_SELML (Uncharacterized protein LHY (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R014_SELML)

HSP 1 Score: 57.8 bits (138), Expect = 1.100e-9
Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            K+ ERW++EEHQ FL+A+K +GR W+ I+  + T++  Q+R+HA  + SKLE+
Sbjct:   10 KQRERWTEEEHQKFLEALKLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKLEK 62
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BLAST of jgi.p|Trimin1|136458 vs. uniprot
Match: A0A7R9TVT7_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TVT7_9VIRI)

HSP 1 Score: 58.9 bits (141), Expect = 1.210e-9
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSKLER 159
            K+ ERW+D EH+ FL+A+K HGR W+ I+  + T++  Q+R+HA  + SKLER
Sbjct:   35 KQRERWTDAEHEKFLEALKIHGRAWRKIEEYIGTKTTVQIRSHAQKFFSKLER 87
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136458 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6K2_9STRA6.240e-31100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z544_9STRA4.820e-2273.58Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A1E7FY50_9STRA1.600e-1153.06Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S3FIK9_9VIRI1.570e-1050.94Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S2XTJ5_9STRA7.050e-1053.06Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
C1FFH0_MICCC9.730e-1050.94Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A8JHC0_CHLRE1.060e-947.17Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A8HVC6_CHLRE1.070e-947.17Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
D8R014_SELML1.100e-947.17Uncharacterized protein LHY (Fragment) n=1 Tax=Sel... [more]
A0A7R9TVT7_9VIRI1.210e-949.06Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_203contigContig_203:162144..162302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136458|gw1.203.12.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04712,map04712
KEGG koko:K12133
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
Max annot lvl3041|Chlorophyta
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota,37STC@33090|Viridiplantae,34M8F@3041|Chlorophyta
Evalue1.59e-10
Seed ortholog296587.XP_002507825.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId136780
TrackFilteredModels1
ProteinId136458
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136458gene_15770Tribonema minus UTEX_B_3156 geneContig_203 162144..162302 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15770_1exon_15770_1Tribonema minus UTEX_B_3156 exonContig_203 162144..162302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15770CDS_15770Tribonema minus UTEX_B_3156 CDSContig_203 162144..162302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136458Trimin1|136458|gw1.203.12.1Tribonema minus UTEX_B_3156 polypeptideContig_203 162144..162302 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15770 ID=mRNA_15770|Name=jgi.p|Trimin1|136458|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_203:162144..162302- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCGCTCCGAGAGGTGGTCCGACGAGGAGCACCAAGCTTTCCTGCAGGC
CATGAAAGAGCATGGCAGGGACTGGAAGCTCATCAAGCGGTCGCTGCCCA
CCCGCAGCCTCACTCAGGTCCGCACTCATGCGTATTGGTACCTGTCCAAG
TTGGAGAGG
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protein sequence of jgi.p|Trimin1|136458

>Trimin1|136458|gw1.203.12.1 ID=Trimin1|136458|gw1.203.12.1|Name=jgi.p|Trimin1|136458|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=53bp
KRSERWSDEEHQAFLQAMKEHGRDWKLIKRSLPTRSLTQVRTHAYWYLSK
LER
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mRNA from alignment at Contig_203:162144..162302-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15770 ID=mRNA_15770|Name=jgi.p|Trimin1|136458|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_203:162144..162302- (Tribonema minus UTEX_B_3156 )
AAGCGCTCCGAGAGGTGGTCCGACGAGGAGCACCAAGCTTTCCTGCAGGC
CATGAAAGAGCATGGCAGGGACTGGAAGCTCATCAAGCGGTCGCTGCCCA
CCCGCAGCCTCACTCAGGTCCGCACTCATGCGTATTGGTACCTGTCCAAG
TTGGAGAGG
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Coding sequence (CDS) from alignment at Contig_203:162144..162302-

>mRNA_15770 ID=mRNA_15770|Name=jgi.p|Trimin1|136458|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=159bp|location=Sequence derived from alignment at Contig_203:162144..162302- (Tribonema minus UTEX_B_3156 )
AAGCGCTCCGAGAGGTGGTCCGACGAGGAGCACCAAGCTTTCCTGCAGGC
CATGAAAGAGCATGGCAGGGACTGGAAGCTCATCAAGCGGTCGCTGCCCA
CCCGCAGCCTCACTCAGGTCCGCACTCATGCGTATTGGTACCTGTCCAAG
TTGGAGAGG
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