mRNA_1576 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153010
Unique NamemRNA_1576
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|153010 vs. uniprot
Match: A0A835YTX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 6.090e-61
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MHGSKHRMTDGYGCGQYVPSDKAFYNMHTARPGDHRRPTNQTYRRDNSLVGIETHRSDISYGHTVARISTGPNAERLATLHATMLTSGEV 270
            MHGSKHRMTDGYGCGQYVPSDKAFYNMHTARPGDHRRPTNQTYRRDNSLVGIETHRSDISYGHTVARISTGPNAERLATLHATMLTSGEV
Sbjct:    1 MHGSKHRMTDGYGCGQYVPSDKAFYNMHTARPGDHRRPTNQTYRRDNSLVGIETHRSDISYGHTVARISTGPNAERLATLHATMLTSGEV 90
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BLAST of jgi.p|Trimin1|153010 vs. uniprot
Match: D8LK01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK01_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:    1 MHGSKHRMTDGYGCGQYVPSDKAFYNMHTARPGDHRRPTNQT---YRRDNSLVGIETHRSDISYGHTVARISTGPNAERLATLHATMLTSGEV 270
            + GS H  +DG G G ++P+D+A++N+ T R    RRP+++    YRR+N   GI+THRSD+S+G     I  G + +  A      LTSGEV
Sbjct:    3 LQGSIHTWSDGIGYGAFMPTDRAYFNVRTPRASV-RRPSSENVREYRRNNVTAGIDTHRSDVSFGRNTESIRGGVDGDSRAREATKSLTSGEV 94
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153010 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YTX7_9STRA6.090e-61100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LK01_ECTSI1.310e-1340.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:357562..357831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153010|gw1.4.356.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_007640.1
TranscriptId153332
TrackFilteredModels1
ProteinId153010
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153010gene_1576Tribonema minus UTEX_B_3156 geneContig_4 357562..357831 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1576_1exon_1576_1Tribonema minus UTEX_B_3156 exonContig_4 357562..357831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1576CDS_1576Tribonema minus UTEX_B_3156 CDSContig_4 357562..357831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153010Trimin1|153010|gw1.4.356.1Tribonema minus UTEX_B_3156 polypeptideContig_4 357562..357831 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1576 ID=mRNA_1576|Name=jgi.p|Trimin1|153010|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_4:357562..357831- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGGCTCCAAACACCGCATGACAGATGGCTATGGTTGCGGACAGTA
CGTGCCCTCAGACAAAGCTTTCTACAACATGCACACTGCTCGCCCCGGAG
ACCATCGTCGCCCGACCAACCAAACATACAGACGCGACAACTCCCTGGTA
GGCATAGAAACTCATAGATCAGACATCAGCTACGGGCACACTGTTGCCCG
CATCAGCACAGGACCCAATGCCGAGCGTCTTGCAACGCTGCATGCCACGA
TGCTTACCTCGGGAGAGGTT
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protein sequence of jgi.p|Trimin1|153010

>Trimin1|153010|gw1.4.356.1 ID=Trimin1|153010|gw1.4.356.1|Name=jgi.p|Trimin1|153010|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
MHGSKHRMTDGYGCGQYVPSDKAFYNMHTARPGDHRRPTNQTYRRDNSLV
GIETHRSDISYGHTVARISTGPNAERLATLHATMLTSGEV
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mRNA from alignment at Contig_4:357562..357831-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1576 ID=mRNA_1576|Name=jgi.p|Trimin1|153010|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_4:357562..357831- (Tribonema minus UTEX_B_3156 )
ATGCATGGCTCCAAACACCGCATGACAGATGGCTATGGTTGCGGACAGTA
CGTGCCCTCAGACAAAGCTTTCTACAACATGCACACTGCTCGCCCCGGAG
ACCATCGTCGCCCGACCAACCAAACATACAGACGCGACAACTCCCTGGTA
GGCATAGAAACTCATAGATCAGACATCAGCTACGGGCACACTGTTGCCCG
CATCAGCACAGGACCCAATGCCGAGCGTCTTGCAACGCTGCATGCCACGA
TGCTTACCTCGGGAGAGGTT
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Coding sequence (CDS) from alignment at Contig_4:357562..357831-

>mRNA_1576 ID=mRNA_1576|Name=jgi.p|Trimin1|153010|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_4:357562..357831- (Tribonema minus UTEX_B_3156 )
ATGCATGGCTCCAAACACCGCATGACAGATGGCTATGGTTGCGGACAGTA
CGTGCCCTCAGACAAAGCTTTCTACAACATGCACACTGCTCGCCCCGGAG
ACCATCGTCGCCCGACCAACCAAACATACAGACGCGACAACTCCCTGGTA
GGCATAGAAACTCATAGATCAGACATCAGCTACGGGCACACTGTTGCCCG
CATCAGCACAGGACCCAATGCCGAGCGTCTTGCAACGCTGCATGCCACGA
TGCTTACCTCGGGAGAGGTT
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