mRNA_15660 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835ZBY4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY4_9STRA) HSP 1 Score: 277 bits (708), Expect = 1.850e-93 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1
Query: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG
Sbjct: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 165
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835ZAQ1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ1_9STRA) HSP 1 Score: 206 bits (524), Expect = 9.430e-66 Identity = 111/143 (77.62%), Postives = 113/143 (79.02%), Query Frame = 1
Query: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMH 429
MSQ GVP NLTTYNLA ACRNSEAVQQADRILAS+AAAG RDWRRAIDVFRDMEANH FVDAGMWNCLLEVLSA A +STLDAAAQMAE GFAPTTTTYM L QAHATLGDGAAIESVLSSMH
Sbjct: 1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSMH 143
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z7V6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V6_9STRA) HSP 1 Score: 172 bits (436), Expect = 2.090e-51 Identity = 97/164 (59.15%), Postives = 111/164 (67.68%), Query Frame = 1
Query: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 492
MSQ G+P NL YN+AL ACR+SEAVQQADRILASMAAA +DWRRA++VF DMEA H F + MW+ L++VL AC AP+STLDAAA MAE G PTT TY + AHA LGDG AIESVLSSM AAG+EV +L L GYAHG
Sbjct: 1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHG 164
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z2Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y9_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.560e-47 Identity = 115/165 (69.70%), Postives = 124/165 (75.15%), Query Frame = 1
Query: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
MSQ GVP TTYNLAL+ACR+S AV QADRIL XXXXXXXXXXXXXXX +DWRRAIDVF MEAN AF D WN LL VLSAC+AP+STL AAA MAERG AP TYM + QA+A LGDGAAIESVLS M AAG+EV PKTL VLA GYA+ G
Sbjct: 211 MSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSG 375
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z0W7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W7_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.830e-46 Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 1
Query: 13 GVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 492
G+P ++ ++NLAL A + A+Q ADRILASMAAAG RDW RAIDVF DMEANH F DA MWN LL+V+ AC AP+STL+ AA MAE G P T TY + QA+A LGDG AIESVL SM AAG++V PKT+ VLA GYA+G
Sbjct: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANG 160
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA) HSP 1 Score: 171 bits (433), Expect = 3.010e-46 Identity = 98/165 (59.39%), Postives = 115/165 (69.70%), Query Frame = 1
Query: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
MS+ +P ++TTY+LAL+ CR+S+AVQQADRILASMAAA +DWRRAI+VFRD+EANH AFVD MWN LL+ L A PQS L AAAQMAERG APT T + L +AHATLGD AA+E VLSSM AG+EV +L VLA GYA GG
Sbjct: 36 MSRSCLPLDITTYSLALRGCRSSDAVQQADRILASMAAARVALDGGTFAGALRTCKVAQDWRRAINVFRDIEANHPAFVDVNMWNRLLQALCASEVPQSALAAAAQMAERGVAPTRETRLVLLKAHATLGDTAAVERVLSSMRVAGEEVTFLSLAVLAKGYACGG 200
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835ZHN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN3_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.350e-36 Identity = 73/107 (68.22%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 175 RDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
RDWRRA++VFRDMEANH F D MWN LL+VL CT P++TL AA MAERGFAPTT TYM L QAHA LGDGAA+ESVLSSMHAAG++V LA GY +GG
Sbjct: 143 RDWRRALEVFRDMEANHPEFADVHMWNRLLQVLVVCTVPRTTLKVAADMAERGFAPTTATYMILLQAHAALGDGAAVESVLSSMHAAGEDVTFAARAALAKGYVYGG 249
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z0G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G4_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.070e-35 Identity = 77/164 (46.95%), Postives = 99/164 (60.37%), Query Frame = 1
Query: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 492
M+Q G P +LT YNLAL C AV AD+ILA MAA G +DW RA+ VF +EA++ A++D +W CLL+ LS C PQ+ L+AAA+MAERG T ++ + +AHA LGDGAA E+ LSSM AAG +V L +A GYAHG
Sbjct: 442 MAQSGTPPDLTAYNLALHTCSGGSAVLHADKILADMAAMGLAPNRHTFRGMLRACRMAQDWERALAVFGSVEAHYPAYMDTDLWICLLDALSVCRQPQAVLEAAARMAERGLPTTAAVHVVIAKAHAELGDGAAAETALSSMRAAGLKVTEVALFKVAEGYAHG 605
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A835Z021_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z021_9STRA) HSP 1 Score: 108 bits (271), Expect = 8.300e-27 Identity = 67/129 (51.94%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 106 MAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 492
MAAAG RDWRRAI VF DMEA H F DA WN LL+VL AP STL AAA MA+RG P T TY + AHA GD AAI+ VL+SM AAG+EV TL + A GY +G
Sbjct: 1 MAAAGIAPDGRTFAGVLQTCRHARDWRRAIYVFFDMEAKHPEFADAHTWNRLLQVLYVHPAPDSTLAAAALMAQRGVVPITATYNTVLWAHAMRGDSAAIKKVLTSMRAAGEEVTLTTLAMCAKGYGYG 129
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Match: A0A836C9W1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W1_9STRA) HSP 1 Score: 106 bits (264), Expect = 4.370e-24 Identity = 66/165 (40.00%), Postives = 88/165 (53.33%), Query Frame = 1
Query: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHGG 495
M Q G ++T YNLAL+A +Q AD +L M AG RD RA+++F MEA +L+FV+ MWN LL + A PQS L A +M +RG AP + TY L AHA LGD A ++S++S M A+G E+ P + GYA GG
Sbjct: 136 MRQSGTKPDVTAYNLALRA---QTRLQSADWLLKEMVDAGVAPDRGTYMAMLRACRMSRDMPRALELFAQMEATNLSFVNVHMWNMLLRAIIASGDPQSALQKATEMTQRGVAPDSITYSLLLAAHAALGDEAKVDSLVSQMSASGVEIPPAYYRWVIEGYAQGG 297 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153699 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15660 ID=mRNA_15660|Name=jgi.p|Trimin1|153699|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_140:394304..394798+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCACAGGTAGGGGTGCCGACGAATCTAACGACGTACAACCTGGCACTback to top protein sequence of jgi.p|Trimin1|153699 >Trimin1|153699|gw1.140.73.1 ID=Trimin1|153699|gw1.140.73.1|Name=jgi.p|Trimin1|153699|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGVAPNRRTFAGback to top mRNA from alignment at Contig_140:394304..394798+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15660 ID=mRNA_15660|Name=jgi.p|Trimin1|153699|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_140:394304..394798+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_140:394304..394798+ >mRNA_15660 ID=mRNA_15660|Name=jgi.p|Trimin1|153699|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_140:394304..394798+ (Tribonema minus UTEX_B_3156 )back to top |