mRNA_15652 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|154181
Unique Name	mRNA_15652
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A835Z9B4_9STRA (BZIP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B4_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.170e-56
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

Query:    1 LKRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR 282
            LKRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR
Sbjct:    1 LKRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR 94

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A835Z3F0_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F0_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.970e-36
Identity = 73/93 (78.49%), Postives = 81/93 (87.10%), Query Frame = 1

Query:    1 LKRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLL 279
            LKRAANRKSASASRARKKTFVEEM+IEN+RMRRNAQILALLPDLIVAL R G VSYVSGACE  LQ+ +E+MRG S+F LVTP+CH  L  L+
Sbjct:   45 LKRAANRKSASASRARKKTFVEEMTIENERMRRNAQILALLPDLIVALSRAGAVSYVSGACETLLQRSTEDMRGTSLFALVTPDCHDTLRALI 137

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A6H5KM69_9PHAE (PAS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KM69_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.490e-23
Identity = 48/89 (53.93%), Postives = 71/89 (79.78%), Query Frame = 1

Query:    1 LKRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGAL 267
            +KRAANRKSAS SRARKK +V++M+ +N+RM+++A +L++LPDL++A+CR G ++YVS AC+  L    E+M G ++F+LV PECH  L
Sbjct:   34 VKRAANRKSASTSRARKKAYVDDMTAKNERMKQHALVLSMLPDLVLAVCRTGEMTYVSPACQWLLLHSPEDMTGANIFELVAPECHPLL 122

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: D7FNF3_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.440e-17
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1

Query:    4 KRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR 282
            KRAANR+SA+  R RKK FVE M+  N+RMR+ A++L+LLPD+I+A+ R G ++Y S  C  FLQ   +E+ G ++FDLV    H  L  LL 
Sbjct:   54 KRAANRRSANTCRLRKKFFVENMADANERMRKRARVLSLLPDMILAMRRDGVITYASENCRQFLQFTRQEVEGTNIFDLVESGSHNRLRRLLE 146

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A6H5KPQ7_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.710e-17
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1

Query:    4 KRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR 282
            KRAANR+SA+  R RKK FVE M+  N+RMR+ A++L+LLPD+I+A+ R G ++Y S  C  FLQ   +E+ G ++FDLV    H  L  LL 
Sbjct:   70 KRAANRRSANTCRLRKKFFVENMADANERMRKRARVLSLLPDMILAMRRDGVITYASENCRQFLQFTRQEVEGTNIFDLVESGSHNRLWRLLE 162

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A7S4W8D6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W8D6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.610e-16
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1

Query:    4 KRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR 282
            KR ANRKSA  SRARKK  VEEM+  N R+RR A ILALLPDL++A+   GT+++ S   E  L+ + E++ G ++ D++ P   GAL  L++
Sbjct:   12 KRVANRKSACTSRARKKALVEEMTRTNARLRRQALILALLPDLVIAITIDGTITFCSAQVERVLRHKEEDLVGSNLNDVLMPLSRGALRHLVK 104

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A7S4VJ34_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VJ34_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.860e-16
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 1

Query:    4 KRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR 282
            KR ANRKSA  SRARKK  VEEM+  N R+RR A ILALLPDL++A+   GT+++ S   E  L+ + E++ G ++ D++ P   GAL  L++
Sbjct:   55 KRVANRKSACTSRARKKALVEEMTRTNARLRRQALILALLPDLVIAITIDGTITFCSAQVERVLRHKEEDLVGSNLNDVLMPLSRGALRHLVK 147

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: F8WSN2_PHATR (BZIP tanscription factor n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=F8WSN2_PHATR)

HSP 1 Score: 77.4 bits (189), Expect = 1.450e-14
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1

Query:    4 KRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR 282
            KR ANR+SAS+SR RKKT V+EM+  N  ++R A ILALLPDL++ + R G +++ S   E  L+ + +++ G+ + DL+ P   G LS L+ 
Sbjct:  228 KRVANRRSASSSRLRKKTLVKEMTEMNAHLKRQALILALLPDLVIVVDREGIITFCSAQVERVLKHKIDDLIGVPLTDLLVPNSRGKLSFLVE 320

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A448YZH8_9STRA (PAS domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZH8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.230e-14
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 1

Query:    4 KRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR 282
            KR ANRKSAS SRARKK  VEEM+  N R+++ A ILALLPDL++     G +++ S   E  L+ +++++ G  +++L+ P    AL  L+ 
Sbjct:   26 KRVANRKSASNSRARKKALVEEMTKTNARLKKQAMILALLPDLVMTTTTDGEITFCSAQAERILRYKTDDLVGAKLYNLLVPSSRHALKTLIE 118

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A7S2UHM5_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHM5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.190e-13
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1

Query:    4 KRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCRRGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLL 276
            KR ANRKSA  SRARKK  VEEM+  N R+RR A IL+LLPD++VA+   G +++ S   E  L+    ++ G  + D++ P    AL  L
Sbjct:  413 KRVANRKSACTSRARKKALVEEMTKTNARLRRQAMILSLLPDMVVAITEDGEITFCSAQVERILRHPVTDLVGAKLTDILVPSSREALDRL 503

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A836CJS4_9STRA (Cytochrome b5-like heme/steroid binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.360e-53
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE 222
            AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE
Sbjct:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE 74

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A835ZLC4_9STRA (Cytochrome b5-like heme/steroid binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.340e-29
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1

Query:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPD 219
            AEVRQH++  D W  + GRVYN++PFLH HPGG E +MR AG DMT LF KYHRWVNA  +IG+LC+GV+A D
Sbjct:   61 AEVRQHRSEHDAWSIYEGRVYNITPFLHYHPGGVEMLMRGAGVDMTGLFNKYHRWVNAQNMIGNLCLGVLAKD 133

[Close]

BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: D7FWC5_ECTSI (Similar to Cytochrome b5 reductase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC5_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.420e-26
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1

Query:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE 222
            AEVRQH T  D W  FRG+VYN++PFLH HPGG   IM+ AG D T LF+KYHRWVN D L+G+L +G +  ++
Sbjct:    7 AEVRQHNTQHDCWSIFRGKVYNLTPFLHYHPGGIPEIMKGAGRDCTALFDKYHRWVNFDGLVGNLYLGPLVTEK 80

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A835YMZ1_9CHLO (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YMZ1_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 4.880e-24
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1

Query:    1 AEVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIA 213
            AEV QHKT  D W   RG+VYN++P+L  HPGGPE +++AAG D T LF K+H WVNADAL+    VG++A
Sbjct:   94 AEVAQHKTADDAWMVLRGKVYNVTPYLRFHPGGPEILVKAAGKDATALFTKFHAWVNADALLDKCLVGLLA 164

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A830HDR1_9CHLO (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HDR1_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 3.090e-22
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIA 213
            EVR+H TP D WC  RG VY+++P+LH HPGG ESI   AG D T +FE YH+WVN  A++    +G++A
Sbjct:   54 EVRRHATPDDAWCVLRGVVYDITPYLHYHPGGFESIASVAGTDATRVFEFYHKWVNYHAMLEKCAIGILA 123

[Close]

BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A7S2DDF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDF3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.090e-21
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1

Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPDE 222
            EV  H + +D+W  FRG+VYN++P+L  HPGG + +M++AG D T LF+KYH WVNA  LIG L VG +  D 
Sbjct:   51 EVAMHSSESDMWTVFRGKVYNITPYLDYHPGGVDILMQSAGKDCTVLFDKYHSWVNARGLIGPLVVGELDEDS 123

[Close]

BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A7J7MMC7_9MAGN (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MMC7_9MAGN)

HSP 1 Score: 90.5 bits (223), Expect = 6.870e-21
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1

Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVI 210
            EV+QHKT   +W   +GRVYN+SP++  HPGG + +M+AAG D T LF KYH WVNA+AL+    VG +
Sbjct:  136 EVKQHKTEGSIWTVLKGRVYNISPYMKFHPGGYDMLMKAAGKDCTSLFNKYHAWVNAEALLEKCLVGTL 204

[Close]

BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A8J4GA65_9CHLO (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4GA65_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.050e-20
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1

Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVIAPD 219
            EV++H T  D W   RG+VYN+ P++  HPGG   +++AAG D TPLF KYH WVNADAL+    +G +A +
Sbjct:   95 EVQKHHTADDAWMVLRGKVYNIGPYMRFHPGGAAILLKAAGKDGTPLFMKYHPWVNADALLEKCLIGTLAQE 166

[Close]

BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A7S3G4S3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4S3_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 2.900e-20
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1

Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALI 186
            EVR+HKT  D W  F G VY++S ++H HPGG + +M AAG D TPLF KYH WVN  ALI
Sbjct:   71 EVREHKTLDDCWIIFEGNVYDISSYMHYHPGGTDKLMLAAGRDATPLFRKYHAWVNGKALI 131

[Close]

BLAST of jgi.p|Trimin1|154181 vs. uniprot
Match: A0A1L0D6L8_9ASCO (CIC11C00000004340 n=2 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0D6L8_9ASCO)

HSP 1 Score: 84.7 bits (208), Expect = 2.640e-19
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1

Query:    4 EVRQHKTPTDVWCTFRGRVYNMSPFLHQHPGGPESIMRAAGGDMTPLFEKYHRWVNADALIGHLCVGVI 210
            E+++H + TD W    GRV+N++ ++H HPGG E IM+ AG D T LF KYH WVN D L+ +  VGV+
Sbjct:   73 ELKKHSSKTDCWTCINGRVFNLTRYIHFHPGGVEEIMKCAGKDGTTLFNKYHSWVNPDRLLENCIVGVL 141

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|154181 vs. uniprot
BLAST of jgi.p|Trimin1|154181 vs. uniprot

BLAST of jgi.p|Trimin1|154181 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A835Z9B4_9STRA	2.170e-56	100.00	BZIP domain-containing protein (Fragment) n=1 Tax=...	[more]
A0A835Z3F0_9STRA	3.970e-36	78.49	PAS domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A6H5KM69_9PHAE	7.490e-23	53.93	PAS domain-containing protein n=2 Tax=Ectocarpus T...	[more]
D7FNF3_ECTSI	1.440e-17	49.46	PAS domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5KPQ7_9PHAE	2.710e-17	49.46	PAS domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A7S4W8D6_9STRA	8.610e-16	48.39	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A7S4VJ34_9STRA	8.860e-16	48.39	Hypothetical protein n=4 Tax=Ditylum brightwellii ...	[more]
F8WSN2_PHATR	1.450e-14	44.09	BZIP tanscription factor n=1 Tax=Phaeodactylum tri...	[more]
A0A448YZH8_9STRA	5.230e-14	43.01	PAS domain-containing protein n=1 Tax=Pseudo-nitzs...	[more]
A0A7S2UHM5_9STRA	6.190e-13	45.05	Hypothetical protein n=2 Tax=Attheya septentrional...	[more]

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BLAST of jgi.p|Trimin1|154181 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CJS4_9STRA	3.360e-53	100.00	Cytochrome b5-like heme/steroid binding domain-con...	[more]
A0A835ZLC4_9STRA	1.340e-29	64.38	Cytochrome b5-like heme/steroid binding domain-con...	[more]
D7FWC5_ECTSI	1.420e-26	58.11	Similar to Cytochrome b5 reductase 4 n=1 Tax=Ectoc...	[more]
A0A835YMZ1_9CHLO	4.880e-24	57.75	Cytochrome b5 heme-binding domain-containing prote...	[more]
A0A830HDR1_9CHLO	3.090e-22	52.86	Cytochrome b5 heme-binding domain-containing prote...	[more]
A0A7S2DDF3_9STRA	3.090e-21	52.05	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7J7MMC7_9MAGN	6.870e-21	53.62	Cytochrome b5 heme-binding domain-containing prote...	[more]
A0A8J4GA65_9CHLO	1.050e-20	50.00	Cytochrome b5 heme-binding domain-containing prote...	[more]
A0A7S3G4S3_9EUKA	2.900e-20	59.02	Hypothetical protein n=1 Tax=Palpitomonas bilix Ta...	[more]
A0A1L0D6L8_9ASCO	2.640e-19	49.28	CIC11C00000004340 n=2 Tax=[Candida] intermedia Tax...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_140	contig	Contig_140:330674..330955 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|154181\|gw1.140.75.1
Description	PAS domain
COG category	K
Max annot lvl	2836\|Bacillariophyta
EggNOG OGs	2E1ZA@1\|root,2S98K@2759\|Eukaryota,2XDCV@2836\|Bacillariophyta
Evalue	3.37e-13
Seed ortholog	35128.Thaps9688
Hectar predicted targeting category	other localisation
TranscriptId	154503
Track	FilteredModels1
ProteinId	154181

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|154181	gene_15652	Tribonema minus UTEX_B_3156	gene	Contig_140 330674..330955 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15652_1	exon_15652_1	Tribonema minus UTEX_B_3156	exon	Contig_140 330674..330955 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15652	CDS_15652	Tribonema minus UTEX_B_3156	CDS	Contig_140 330674..330955 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|154181	Trimin1\|154181\|gw1.140.75.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_140 330674..330955 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_140:330674..330955-
coding sequence from alignment at Contig_140:330674..330955-

spliced messenger RNA

>mRNA_15652 ID=mRNA_15652|Name=jgi.p|Trimin1|154181|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_140:330674..330955- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCAAGCGCGCGGCGAACCGCAAGTCCGCGAGCGCGAGCCGCGCGCGCAA
GAAGACGTTCGTGGAGGAAATGTCCATCGAGAACGACAGGATGCGCCGCA
ACGCGCAGATCCTGGCGCTGCTGCCGGACCTCATAGTCGCGCTGTGCCGC
CGCGGCACCGTCTCGTACGTGAGCGGCGCATGCGAGGCCTTCCTGCAGAA
GCGCAGCGAGGAGATGCGCGGCATGTCCATGTTTGACCTGGTGACGCCGG
AGTGCCATGGCGCGCTCAGCCTGCTGCTGCGC

protein sequence of jgi.p|Trimin1|154181

>Trimin1|154181|gw1.140.75.1 ID=Trimin1|154181|gw1.140.75.1|Name=jgi.p|Trimin1|154181|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp
LKRAANRKSASASRARKKTFVEEMSIENDRMRRNAQILALLPDLIVALCR
RGTVSYVSGACEAFLQKRSEEMRGMSMFDLVTPECHGALSLLLR

mRNA from alignment at Contig_140:330674..330955-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15652 ID=mRNA_15652|Name=jgi.p|Trimin1|154181|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_140:330674..330955- (Tribonema minus UTEX_B_3156 )
CTCAAGCGCGCGGCGAACCGCAAGTCCGCGAGCGCGAGCCGCGCGCGCAA
GAAGACGTTCGTGGAGGAAATGTCCATCGAGAACGACAGGATGCGCCGCA
ACGCGCAGATCCTGGCGCTGCTGCCGGACCTCATAGTCGCGCTGTGCCGC
CGCGGCACCGTCTCGTACGTGAGCGGCGCATGCGAGGCCTTCCTGCAGAA
GCGCAGCGAGGAGATGCGCGGCATGTCCATGTTTGACCTGGTGACGCCGG
AGTGCCATGGCGCGCTCAGCCTGCTGCTGCGC

Coding sequence (CDS) from alignment at Contig_140:330674..330955-

>mRNA_15652 ID=mRNA_15652|Name=jgi.p|Trimin1|154181|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_140:330674..330955- (Tribonema minus UTEX_B_3156 )
CTCAAGCGCGCGGCGAACCGCAAGTCCGCGAGCGCGAGCCGCGCGCGCAA
GAAGACGTTCGTGGAGGAAATGTCCATCGAGAACGACAGGATGCGCCGCA
ACGCGCAGATCCTGGCGCTGCTGCCGGACCTCATAGTCGCGCTGTGCCGC
CGCGGCACCGTCTCGTACGTGAGCGGCGCATGCGAGGCCTTCCTGCAGAA
GCGCAGCGAGGAGATGCGCGGCATGTCCATGTTTGACCTGGTGACGCCGG
AGTGCCATGGCGCGCTCAGCCTGCTGCTGCGC