mRNA_1564 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|346645
Unique NamemRNA_1564
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A836CES0_9STRA (zf-Tim10_DDP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CES0_9STRA)

HSP 1 Score: 192 bits (488), Expect = 9.510e-61
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 MEGNLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQAARGQDNARCRNEQLESA 291
            MEGNLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQAARGQDNARCRNEQLESA
Sbjct:    1 MEGNLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQAARGQDNARCRNEQLESA 97
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BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A7S2EKW1_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKW1_TRICV)

HSP 1 Score: 77.4 bits (189), Expect = 2.160e-15
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   10 NLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQA 240
            NL+  +Q +LM  ME  Q+K+S+  Y +   +CFG CVT+F++K LD +ETAC+E+C +++LK++QR G R  ++QA
Sbjct:   10 NLSSYQQQELMKAMEEMQMKDSLSMYTKLVDRCFGSCVTSFRSKSLDKSETACLEHCASRYLKMTQRVGLRFAEHQA 86
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BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A7R9Z9X8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9X8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.610e-14
Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:   10 NLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQA 240
            NL   +Q +LM  ME  Q+K+S+  Y +   +CFG CVT+F++K LD +E +C+ENC +++LK++QR G R  ++QA
Sbjct:    8 NLNAYQQQELMKNMEQMQMKDSLSMYTKLVDRCFGGCVTSFRSKTLDKSEISCVENCASRYLKMTQRVGLRFAEHQA 84
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BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A1Z5K1L1_FISSO (zf-Tim10_DDP domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1L1_FISSO)

HSP 1 Score: 67.4 bits (163), Expect = 1.080e-11
Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   25 EQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQA 240
            +Q   M  ME  Q K+S+  YN    +CF  CVT+F++K LD +E++C+E+C ++++K++QR G R  ++QA
Sbjct:   11 QQQAFMKEMEAMQTKDSLNMYNNLVMRCFDGCVTSFRSKSLDKSESSCVEHCASRYVKMTQRVGLRFAEHQA 82
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BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A8H8A7Z6_9ASCO (zf-Tim10_DDP domain-containing protein n=1 Tax=Pneumocystis sp. 'macacae' TaxID=2698480 RepID=A0A8H8A7Z6_9ASCO)

HSP 1 Score: 65.9 bits (159), Expect = 3.200e-11
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   13 LTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQR 222
            L + EQA L G ME +Q+K+ MK Y+    KCF  C+  F +K L++ E  C+  C  KFLK S+R GQR
Sbjct:    4 LNQKEQATLQGIMEIKQMKDFMKMYSNLVQKCFSDCINEFISKSLNSKEETCVIRCANKFLKHSERVGQR 73
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BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A7R9WQL2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQL2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.960e-11
Identity = 30/76 (39.47%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   25 EQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQAARGQ 252
            +Q + M  +E  Q+K+S+  YN    +CF  CV++F++K LD +E  C+ENC A+++K++QR G R  ++QA + Q
Sbjct:   73 QQQEFMKHLEQMQLKDSLVMYNNLVERCFSGCVSSFRSKNLDKSEITCVENCAARYVKMTQRVGLRFAEHQALQQQ 148
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BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A1E3HUL3_9TREE (Mitochondrial import inner membrane translocase subunit TIM9 n=4 Tax=Cryptococcus TaxID=5206 RepID=A0A1E3HUL3_9TREE)

HSP 1 Score: 65.9 bits (159), Expect = 4.020e-11
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   25 EQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQAARGQ 252
            EQA +  F+E +Q+++ M+ Y+    KCF  C   F TK L + ET C++NCT K+LK S+R G R  ++ AA+ Q
Sbjct:   10 EQAHMTKFIEKKQMQDFMRLYSGLVEKCFNSCAQDFTTKSLSSNETTCVQNCTDKWLKHSERVGARFNEHNAAQMQ 85
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BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A4D9DA59_9STRA (zf-Tim10_DDP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA59_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.300e-11
Identity = 30/77 (38.96%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:   10 NLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQA 240
            N+   ++ + M  +E  QVK+S+  YN+   +CF +CVT F++KK+D TE +C+  C  K+LKL+ R G R  ++Q+
Sbjct:    6 NIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQS 82
[Close]
BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A6G1LNB9_9PEZI (Putative mitochondrial intermembrane space translocase subunit Tim9 n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LNB9_9PEZI)

HSP 1 Score: 65.5 bits (158), Expect = 6.740e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    7 GNLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQAARGQ 252
            G L  AEQ +L G ME +Q+K+ M  Y+    +CF  CVT F +K L + E  C+  C  KFLK S+R G+R  +  AA  Q
Sbjct:    5 GGLNAAEQRELQGRMEQKQMKDFMHMYSNLVQRCFDDCVTDFSSKALLSKEEGCVMRCVDKFLKSSERLGERFQEQNAAMAQ 86
[Close]
BLAST of jgi.p|Trimin1|346645 vs. uniprot
Match: A0A067CW90_SAPPC (zf-Tim10_DDP domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW90_SAPPC)

HSP 1 Score: 64.7 bits (156), Expect = 1.150e-10
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   10 NLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQAA 243
            NL   +Q +LM   E +Q++ S+  YN+    CF +CV +F++KKLD  E  CI  CT KF+K +QR   R  + QAA
Sbjct:    6 NLPAYQQQELMKHFEEKQLEESLAMYNRVVATCFNECVQSFRSKKLDDKEEGCINKCTEKFVKHTQRVATRFQEAQAA 83
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346645 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CES0_9STRA9.510e-61100.00zf-Tim10_DDP domain-containing protein n=1 Tax=Tri... [more]
A0A7S2EKW1_TRICV2.160e-1545.45Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7R9Z9X8_9STRA4.610e-1444.16Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1Z5K1L1_FISSO1.080e-1140.28zf-Tim10_DDP domain-containing protein n=2 Tax=Fis... [more]
A0A8H8A7Z6_9ASCO3.200e-1145.71zf-Tim10_DDP domain-containing protein n=1 Tax=Pne... [more]
A0A7R9WQL2_9STRA3.960e-1139.47Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E3HUL3_9TREE4.020e-1142.11Mitochondrial import inner membrane translocase su... [more]
A0A4D9DA59_9STRA5.300e-1138.96zf-Tim10_DDP domain-containing protein n=1 Tax=Nan... [more]
A0A6G1LNB9_9PEZI6.740e-1142.68Putative mitochondrial intermembrane space translo... [more]
A0A067CW90_SAPPC1.150e-1042.31zf-Tim10_DDP domain-containing protein n=4 Tax=Sap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:278696..280459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|346645|estExt_Genemark1.C_Ctg_40031
KEGG TC3.A.8.1
BRITEko00000,ko02000,ko03029
KEGG koko:K17777
DescriptionBelongs to the small Tim family
COG categoryU
Max annot lvl3041|Chlorophyta
EggNOG OGsKOG3479@1|root,KOG3479@2759|Eukaryota,37VBV@33090|Viridiplantae,34IJN@3041|Chlorophyta
Evalue3.76e-14
Seed ortholog3075.A0A087SDK6
Hectar predicted targeting categoryother localisation
TranscriptId346967
TrackFilteredModels1
ProteinId346645
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346645gene_1564Tribonema minus UTEX_B_3156 geneContig_4 278696..280459 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1564_1exon_1564_1Tribonema minus UTEX_B_3156 exonContig_4 278696..278942 +
exon_1564_2exon_1564_2Tribonema minus UTEX_B_3156 exonContig_4 279791..279825 +
exon_1564_3exon_1564_3Tribonema minus UTEX_B_3156 exonContig_4 280216..280459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1564CDS_1564Tribonema minus UTEX_B_3156 CDSContig_4 278696..278942 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1564UTR3_1564Tribonema minus UTEX_B_3156 three_prime_UTRContig_4 280228..280459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346645Trimin1|346645|estExt_Genemark1.C_Ctg_40031Tribonema minus UTEX_B_3156 polypeptideContig_4 278696..280227 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1564 ID=mRNA_1564|Name=jgi.p|Trimin1|346645|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=526bp|location=Sequence derived from alignment at Contig_4:278696..280459+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGCAACTTGACGGAGGCCGAGCAAGCCAAGCTCATGGGTTTCAT
GGAGTTCGAGCAGGTCAAGAACAGCATGAAGGCCTACAACCAGACTGCGT
ACAAGTGCTTCGGGCAGTGTGTGACAACCTTCAAGACCAAGAAGCTGGAT
GCCACAGAGACAGCGTGCATTGAGAACTGCACCGCCAAGTTCCTGAAGCT
CAGCCAGAGGACGGGACAAAGAATGGGGGACTACCAGGCTGCAAGAGGCC
AGGACAACGCGCGCTGCAGAAATGAGCAGCTGGAATCAGCGTAGCCCCGC
ATGAACGCGTGCGATTCAGCAGAAGCTACGCGATGTTGGCACCGCCGTTG
GCGCCGCTGGCGCTGCCGCTGCCTCCAATGGCTCCATAGAGCCCGCCGCT
GCTGCTGCTGCTGCTGCCGCTAGTACTGCCGCTATGGCCGCAAGCTGCCG
CTCGCATCTCCACTGCCGAGCCGCCGCCGCCGCCGCCGCCGCCGCGCAAC
AGCGACCCCCCTGCGGCCGGCCGCGA
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protein sequence of jgi.p|Trimin1|346645

>Trimin1|346645|estExt_Genemark1.C_Ctg_40031 ID=Trimin1|346645|estExt_Genemark1.C_Ctg_40031|Name=jgi.p|Trimin1|346645|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
MEGNLTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLD
ATETACIENCTAKFLKLSQRTGQRMGDYQAARGQDNARCRNEQLESA*
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mRNA from alignment at Contig_4:278696..280459+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1564 ID=mRNA_1564|Name=jgi.p|Trimin1|346645|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1764bp|location=Sequence derived from alignment at Contig_4:278696..280459+ (Tribonema minus UTEX_B_3156 )
ATGGAGGGCAACTTGACGGAGGCCGAGCAAGCCAAGCTCATGGGTTTCAT
GGAGTTCGAGCAGGTCAAGAACAGCATGAAGGCCTACAACCAGACTGCGT
ACAAGTGCTTCGGGCAGTGTGTGACAACCTTCAAGACCAAGAAGCTGGAT
GCCACAGAGACAGCGTGCATTGAGAACTGCACCGCCAAGTTCCTGAAGCT
CAGCCAGAGGACGGGACAAAGAATGGGGGACTACCAGGCTGCAAGAGGTT
AATAATGAAATATAGGTATCATGACACATATTTCATTGTCTAAATGTCTT
ACATCTGTGCTGATGTCTGGTGCATGCTCACTAGGCCAGCTGCTGACATG
GTCTGCAGGTGCATGCGCAAATGCCTTGGAGTATGGACAAGTGAAATGCA
TGCACGAATGCATTATAGTATCGCCGAGCCGGTTACACCAGCACCGGCTT
CCGCGATGACGACCAGCACATGATTGCCTTCGGACGCAGCATTGCTAGCA
AGCAGAGCTTTCGCCAATCTAAGGCATCTTGTGCACCGCTCCCTGTGTTG
GGGCCATTTACGCGTTGTCCTCATGTCAGCTGATGGGTGATGGGCATTAG
CGACACACTTTTGCAACACATCATTATGTGCTGCCCTGCACGGTCAGATC
CTCGACAGTGTTCGCAAGTGTGCATGTCGGTTTTCTATGCATCACTGCAC
TTGCTGTCCCCATGTCAGGATATTGCTGGTGCCAGACTCCAATGCCGAAC
TGTGACAGTAGGAGAGTTTGTCGCAATGTTGATGCTCATGTGTCCGCTGC
TTACACACCGGCTTTGGAGCATTTTGGGGGGTGTCATGTGTTGTTCAAGA
CTTGTTGTGCGTATGTGCCACATGTTCGACCATGTTGAAAAATGGTTGGC
TGGCCGTCATGGCGGCAACCACCTATAGTTTGAGGGTTGTGGCATGCATT
AGTGGCACCCCAAACAAGCATATGCATCCTGAAGCAGATGCTGTCGTCAT
ATAATGACATGGTGCAGCAAGCACCCACAGTCCAGGGCAAAAGCCATTGC
ATTCGTGAAATGCAGCAGTGCAATGCCTTGCGAGCCAGAACACAGGCCAG
GACAACGCGCGCTGCAGAAATGAGCAGCTGGTATGTATGCGCCTCACTCT
CAGGCGAACCGAATGTGATGAGTTCAGTACCTATTCAGGTAGTGTCCACA
CGAGTGCTGCCATTCGGTGTAGGTACCAAAGAGCGCTCTAGGGCGGGTGT
GATTTGTGCTGAATGGGGAACAGATTTGGCACGCGCTCTTTCTTAGAAGA
CTGCTCTCTATGCCCTCCGCTGCCGCGGCACTTACAATGGGCACTACGTG
TATGCACGCGCGCAACCGCAACAGGGCCAGCCTGCAGTGCGCACCGGAAA
ATTGTCGGGTCACTGAAGTGCTTTAAAAAACAAACATGCAGCTGAGGGCG
TCATGATTGCTCAGCCATTTTGCTGAGCATCGCGCCCCGCCCCCCCAGTA
AACTTGAATCGCGCCCGCAGGAATCAGCGTAGCCCCGCATGAACGCGTGC
GATTCAGCAGAAGCTACGCGATGTTGGCACCGCCGTTGGCGCCGCTGGCG
CTGCCGCTGCCTCCAATGGCTCCATAGAGCCCGCCGCTGCTGCTGCTGCT
GCTGCCGCTAGTACTGCCGCTATGGCCGCAAGCTGCCGCTCGCATCTCCA
CTGCCGAGCCGCCGCCGCCGCCGCCGCCGCCGCGCAACAGCGACCCCCCT
GCGGCCGGCCGCGA
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Coding sequence (CDS) from alignment at Contig_4:278696..280459+

>mRNA_1564 ID=mRNA_1564|Name=jgi.p|Trimin1|346645|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_4:278696..280459+ (Tribonema minus UTEX_B_3156 )
ATGGAGGGCAACTTGACGGAGGCCGAGCAAGCCAAGCTCATGGGTTTCAT
GGAGTTCGAGCAGGTCAAGAACAGCATGAAGGCCTACAACCAGACTGCGT
ACAAGTGCTTCGGGCAGTGTGTGACAACCTTCAAGACCAAGAAGCTGGAT
GCCACAGAGACAGCGTGCATTGAGAACTGCACCGCCAAGTTCCTGAAGCT
CAGCCAGAGGACGGGACAAAGAATGGGGGACTACCAGGCTGCAAGAGGCC
AGGACAACGCGCGCTGCAGAAATGAGCAGCTGGAATCAGCGTAG
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