mRNA_15622 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|12999
Unique Name	mRNA_15622
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|12999 vs. uniprot
Match: A0A836CIV8_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV8_9STRA)

HSP 1 Score: 404 bits (1038), Expect = 4.180e-140
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1

Query:    4 GTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE 624
            GTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE
Sbjct:   33 GTSTVRSQLPFMEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQGGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSAHPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQRRAFLVAELKQWADPPSAXXXXXXXXXXXXXXTKRKFGGLEGDDDE 239

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|12999 vs. uniprot

BLAST of jgi.p|Trimin1|12999 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CIV8_9STRA	4.180e-140	100.00	Uncharacterized protein n=4 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_121	contig	Contig_121:470239..472312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|12999\|CE12998_37
Hectar predicted targeting category	other localisation
TranscriptId	13321
Track	FilteredModels1
ProteinId	12999

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|12999	gene_15622	Tribonema minus UTEX_B_3156	gene	Contig_121 470239..472312 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15622_1	exon_15622_1	Tribonema minus UTEX_B_3156	exon	Contig_121 470239..470463 +
exon_15622_2	exon_15622_2	Tribonema minus UTEX_B_3156	exon	Contig_121 471605..472312 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_15622	UTR5_15622	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_121 470239..470274 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15622	CDS_15622	Tribonema minus UTEX_B_3156	CDS	Contig_121 470275..470463 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15622	UTR3_15622	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_121 472007..472312 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|12999	Trimin1\|12999\|CE12998_37	Tribonema minus UTEX_B_3156	polypeptide	Contig_121 470275..472006 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_121:470239..472312+
coding sequence from alignment at Contig_121:470239..472312+

spliced messenger RNA

>mRNA_15622 ID=mRNA_15622|Name=jgi.p|Trimin1|12999|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_121:470239..472312+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGGCACCAGCACGGTGCGGTCGCAACTGCCGTTCATGGAAGAGCGCAA
CTTTGAGAAGGACGGCAGGAGCTGGACGAGCAAGTTCTGCGGTGAACACA
AGAAGGACCTTTACAGCAACGACAACGGGAAGAAGTCAAAGCGGATCTGC
CTGTCTTGCCTTCACCCCTTCTCCGCTGGCAAGCAGGGAGGAACGGTGCA
CAACATGTCCATCACGCTGCCGGAGGGCAAGAACGGAGACAAGCGAGCCA
TGCATGCTGATTGGGGAGGCTGCCAGCTCGGCATCATGAGTGAGGACGAC
TTCAAGAAGAACCTGCCCTGCATGCACTCGTCCGCCCACCCCAATGCCAG
CGAGTTGCAGGTGGCTCCAGCGCTGGTGGCGCTCTGCGAGTCCACTAAGG
CGCACAAGGACAAGTCCATGGAGGATAAGCCCACGACGCGGTTCCTGCAC
GGCGGCTATGCCATTCATCTGGCGTGCGCCCGCCAGCGTCGAGCCTTCCT
GGTCGCCGAACTGAAGCAGTGGGCGGACCCACCGTCCGCTGAGGACGACG
AGCAGGACGAGGATGGGGGTGGGGGTGGAGGCACCAAGCGAAAGTTCGGC
GGCCTGGAAGGCGACGACGACGAGTAGCTTCGTGGGCGTGTGGCGCATGC
ATGGCGACAGTTGCGCTGTAGCAAATTGTCAGTCGCGCCCCTATCGCTTC
TTGCGCCGACGGTGCACTCACGACGGTGCTGTGCATTGCGAAGTCATTTC
ATGTTTGTAATGTGCACGCATCGGCCTGCACAGTGCTTCTGTGCCTGCAG
TCGCACAGTGTCACTCGTGCCTGCACAGTGCTTTTATGCCAGCGGTGCGC
TACTGCAGCTTGTGTTCGTCGAGTAATTGCCTAATTGTAGTGTGCACGCG
CCCGCCTGCACAGTGCCTTGTGCCTGCGGTGCA

protein sequence of jgi.p|Trimin1|12999

>Trimin1|12999|CE12998_37 ID=Trimin1|12999|CE12998_37|Name=jgi.p|Trimin1|12999|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=197bp
MEERNFEKDGRSWTSKFCGEHKKDLYSNDNGKKSKRICLSCLHPFSAGKQ
GGTVHNMSITLPEGKNGDKRAMHADWGGCQLGIMSEDDFKKNLPCMHSSA
HPNASELQVAPALVALCESTKAHKDKSMEDKPTTRFLHGGYAIHLACARQ
RRAFLVAELKQWADPPSAEDDEQDEDGGGGGGTKRKFGGLEGDDDE*

mRNA from alignment at Contig_121:470239..472312+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15622 ID=mRNA_15622|Name=jgi.p|Trimin1|12999|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2074bp|location=Sequence derived from alignment at Contig_121:470239..472312+ (Tribonema minus UTEX_B_3156 )
GCAGGCACCAGCACGGTGCGGTCGCAACTGCCGTTCATGGAAGAGCGCAA
CTTTGAGAAGGACGGCAGGAGCTGGACGAGCAAGTTCTGCGGTGAACACA
AGAAGGACCTTTACAGCAACGACAACGGGAAGAAGTCAAAGCGGATCTGC
CTGTCTTGCCTTCACCCCTTCTCCGCTGGCAAGCAGGGAGGAACGGTGCA
CAACATGTCCATCACGCTGCCGGAGGTAAATTCAACCTTGCAGTTCTTGC
CATGCTCACTTTATCGTCTTGCCGCCGATATGCCAGCCATGTTGGCCACA
CTTAAGCTTTGCTGCAATCCCCATGGTGCTAGTTGCGTTTGTTTTACATA
TGGCTGAGTGAGACTCTGCTCGCAGTGCCTTTAAGCTTTGCTGCAAAACC
CATGGTCCTAGTTGCATTGGTTGCACATATTACTGTCTGTGCTCGCAGCG
CCTTTCGCGCCGTCAACGTCCATGGCGCCATCTGCTCACCGCGCCAGTTG
CTGATCACTGAATATGGCGTGTCATGCATGACCAGGATGGGCATGAGAGA
CTAGTGCAAGCGCTGATAGCACCATCTGCTCGCCGCGCCAATTCCTCATT
TTCGGCTCTAATGTACTACCATCTTGCCACAGCTCTGCAGGCCGCTCATC
TTGCCTTCTTGCAGTGCTCACGGTGCCATATTGCTGACAGTGCTCAACGC
ACCGTTTGCTGACGCAGCCACAGCATCGATGGCGCCATCCGGTAGCCGCG
CATTAGGCTTACCGTTACAACATATATGCAACAATTCTCCTCGTGCTCCA
CATGTGTAAACAATTCTCCTCATGCTCTTCTGCACCCGCAGTCTGCTCCG
ACGACACGCGCACTGCCCGTTTCCCTCATTTGCCTTCTTGCCATATTGCT
GACACTGCTCAACGCGCGCGCCTTCTGCTGACGCAGCCACAACATCTATG
GCACCATCCACTCGCCGCACATTCGGCTTACTGTTACAACATATATGCAA
CAATTCTCCTCGTGCTCAACATAGTATATGCAACAATTCTCCTCATGCTC
TTCTGCACCCGAAGCCTGCTGAGACGACACACGCACTGCATGTGTACCTC
ATTTCCGGTTGTGTTTAGCAGCAGCACTCATCACCAGTGCATCCATCATC
CTTTCTCGTGCTTTCATGGTGCCAGCATTGGCCCTGCCCACTCTTGCACA
GGTACTATGCATCAACTTCTCTTTGTGCGCTTCTCCGCCTGCAGCGTGCT
CCATGTGTCACAACCCTCACTGCCTGTCATTCGCTCCCCACAACACATGC
ACTGCAGCCCCGCCTGCTGTTACACTGGCCGTGTCCTGATGGCGCACATC
TTTTTACCACTCGCAGGGCAAGAACGGAGACAAGCGAGCCATGCATGCTG
ATTGGGGAGGCTGCCAGCTCGGCATCATGAGTGAGGACGACTTCAAGAAG
AACCTGCCCTGCATGCACTCGTCCGCCCACCCCAATGCCAGCGAGTTGCA
GGTGGCTCCAGCGCTGGTGGCGCTCTGCGAGTCCACTAAGGCGCACAAGG
ACAAGTCCATGGAGGATAAGCCCACGACGCGGTTCCTGCACGGCGGCTAT
GCCATTCATCTGGCGTGCGCCCGCCAGCGTCGAGCCTTCCTGGTCGCCGA
ACTGAAGCAGTGGGCGGACCCACCGTCCGCTGAGGACGACGAGCAGGACG
AGGATGGGGGTGGGGGTGGAGGCACCAAGCGAAAGTTCGGCGGCCTGGAA
GGCGACGACGACGAGTAGCTTCGTGGGCGTGTGGCGCATGCATGGCGACA
GTTGCGCTGTAGCAAATTGTCAGTCGCGCCCCTATCGCTTCTTGCGCCGA
CGGTGCACTCACGACGGTGCTGTGCATTGCGAAGTCATTTCATGTTTGTA
ATGTGCACGCATCGGCCTGCACAGTGCTTCTGTGCCTGCAGTCGCACAGT
GTCACTCGTGCCTGCACAGTGCTTTTATGCCAGCGGTGCGCTACTGCAGC
TTGTGTTCGTCGAGTAATTGCCTAATTGTAGTGTGCACGCGCCCGCCTGC
ACAGTGCCTTGTGCCTGCGGTGCA

Coding sequence (CDS) from alignment at Contig_121:470239..472312+

>mRNA_15622 ID=mRNA_15622|Name=jgi.p|Trimin1|12999|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=591bp|location=Sequence derived from alignment at Contig_121:470239..472312+ (Tribonema minus UTEX_B_3156 )
ATGGAAGAGCGCAACTTTGAGAAGGACGGCAGGAGCTGGACGAGCAAGTT
CTGCGGTGAACACAAGAAGGACCTTTACAGCAACGACAACGGGAAGAAGT
CAAAGCGGATCTGCCTGTCTTGCCTTCACCCCTTCTCCGCTGGCAAGCAG
GGAGGAACGGTGCACAACATGTCCATCACGCTGCCGGAGGGCAAGAACGG
AGACAAGCGAGCCATGCATGCTGATTGGGGAGGCTGCCAGCTCGGCATCA
TGAGTGAGGACGACTTCAAGAAGAACCTGCCCTGCATGCACTCGTCCGCC
CACCCCAATGCCAGCGAGTTGCAGGTGGCTCCAGCGCTGGTGGCGCTCTG
CGAGTCCACTAAGGCGCACAAGGACAAGTCCATGGAGGATAAGCCCACGA
CGCGGTTCCTGCACGGCGGCTATGCCATTCATCTGGCGTGCGCCCGCCAG
CGTCGAGCCTTCCTGGTCGCCGAACTGAAGCAGTGGGCGGACCCACCGTC
CGCTGAGGACGACGAGCAGGACGAGGATGGGGGTGGGGGTGGAGGCACCA
AGCGAAAGTTCGGCGGCCTGGAAGGCGACGACGACGAGTAG