mRNA_15601 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA) HSP 1 Score: 555 bits (1429), Expect = 2.480e-198 Identity = 287/309 (92.88%), Postives = 293/309 (94.82%), Query Frame = 1 Query: 1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASACRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITN----ECFGVADARDRVAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSIAAEMGVRIKAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLN 915 MGSVLDVIRLVNPEIPSNQASSTFKRLA ELPDVAS+CRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLV+EIEGRCRALQATEVGRAAQDFLIGDGSV+VSRELPAELQLATPEQRTLFV SWMH RRLALIDREKTQQLALI FGVADARDR+AFGDLVR VVQPPAHD GALIVARPMSEDDPSVATPLAQVAHRGPEISMHS+AAEMGVRIKAGTECLI KKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRT T+LN Sbjct: 18 MGSVLDVIRLVNPEIPSNQASSTFKRLALELPDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVNEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRELPAELQLATPEQRTLFVASWMHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTATLLN 326
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA) HSP 1 Score: 476 bits (1225), Expect = 9.300e-158 Identity = 251/305 (82.30%), Postives = 263/305 (86.23%), Query Frame = 1 Query: 1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASACRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITNECFGVADARDRVAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSIAAEMGVRIKAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLN 915 MGSVLDVIRLVNPEIPSNQASSTFKR+ATELPD+AS+C QLRINGNGKLTPCADARTLVEIV SLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATE+GRAAQDFLIGDGS +VSR+LPAELQLATPEQRT F GVADARDR+AFGDLVR VVQPPAHDDGALIVARPMSEDDPSVATP A VAHRGPEISM S+AAEMGVRIKAGTECLI KKVKALYAIKYGTAAAAAIPKRN+ FRG++FAENTYWKR+QD MEEAI TVTMLN Sbjct: 150 MGSVLDVIRLVNPEIPSNQASSTFKRVATELPDMASSCCQLRINGNGKLTPCADARTLVEIVGSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEMGRAAQDFLIGDGSDQVSRDLPAELQLATPEQRTFF------------------------------GVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTVTMLN 424
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA) HSP 1 Score: 375 bits (964), Expect = 6.080e-129 Identity = 208/305 (68.20%), Postives = 214/305 (70.16%), Query Frame = 1 Query: 1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASACRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITNECFGVADARDRVAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSIAAEMGVRIKAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLN 915 MGSVLDVIRLVNPEIPSNQAS TFKRLATELPDVAS+CRQLRI GNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATE PPAHDDGALIVARPMSEDDPSV TPLAQVAH+GPEISMHS+AAEMGVRIKAGTECLI KKVKALYAIKYGTAAAAAIPKRN+PFRG++FAENTYWKRDQDLMEEAI TVTMLN Sbjct: 18 MGSVLDVIRLVNPEIPSNQASFTFKRLATELPDVASSCRQLRIYGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATE--------------------------------------------------------------------------------------PPAHDDGALIVARPMSEDDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTVTMLN 236
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A836CKR7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR7_9STRA) HSP 1 Score: 373 bits (958), Expect = 7.340e-128 Identity = 193/231 (83.55%), Postives = 204/231 (88.31%), Query Frame = 1 Query: 1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASACRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITN----ECFGVADARDRVAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPE 681 MGSVLDVIRLVNPE PSNQ STFKRLATELPDVAS+C QLR+N NGKLTPCADARTLV+ VWSLPGKPA AFRRTSATTVCR++GGDVSLVDEIEGRCRALQATEVGRAA+DFLIGDG V+VSRELP ELQL T EQRTL V +WMH RRLALID EKTQQLALI FGVADARDR+AFGDL R VVQPPAHDD ALIVARPMSEDDP+VATPLAQVAHRGP+ Sbjct: 18 MGSVLDVIRLVNPETPSNQVPSTFKRLATELPDVASSCCQLRMNRNGKLTPCADARTLVQNVWSLPGKPACAFRRTSATTVCRIVGGDVSLVDEIEGRCRALQATEVGRAARDFLIGDGGVQVSRELPPELQLGTREQRTLCVANWMHERRLALIDHEKTQQLALIKNGFDLVGSFGVADARDRMAFGDLARRVVQPPAHDDSALIVARPMSEDDPTVATPLAQVAHRGPK 248
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A836CBT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT4_9STRA) HSP 1 Score: 380 bits (975), Expect = 4.110e-121 Identity = 206/260 (79.23%), Postives = 215/260 (82.69%), Query Frame = 1 Query: 148 TPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITN----ECFGVADARDRVAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSIAAEMGVRIKAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLN 915 TPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIE CRALQATEVGR AQDFLIGDGSV+VSRELPAELQLATPEQRTLFV SW+H RRLALIDREKTQQLALI FGVADARDR+AFGDLVR VVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHS+AAEMGVRIKAGT ++ + G ++ AENTYWKRDQDLMEEAIRTVTMLN Sbjct: 4 TPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEWWCRALQATEVGRTAQDFLIGDGSVKVSRELPAELQLATPEQRTLFVASWIHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGT----------VFDREEGEGFV----------HHQICAENTYWKRDQDLMEEAIRTVTMLN 243
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A836CN02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN02_9STRA) HSP 1 Score: 280 bits (715), Expect = 3.360e-92 Identity = 147/163 (90.18%), Postives = 150/163 (92.02%), Query Frame = 1 Query: 439 MHGRRLALIDREKTQQLALIITN----ECFGVADARDRVAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSIAAEMGVRIKAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLN 915 MH RRLALIDREKTQQLALI FGVADARDR+AFGDLVR VVQPPAHDDGALIVARPM EDDPSVATPLAQVAHRGPEISMHS+AAEMGVRIKAG+ECLI KKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLN Sbjct: 1 MHERRLALIDREKTQQLALINNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDDGALIVARPMCEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTVTMLN 163
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA) HSP 1 Score: 257 bits (656), Expect = 1.010e-80 Identity = 149/324 (45.99%), Postives = 195/324 (60.19%), Query Frame = 1 Query: 1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASACRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGD--------GSVEVSRELPAELQLATPEQRTLFVTSWMH--GRRLALIDREKTQQLALIITN-------------ECFGVADARDRVAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSIAAEMGVRIKAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 903 +GSV+DVIR+VNP A+ L + + + + +RING GK TPCA AR LVE+V+ LPGK AR FRR SATTVCRVLGGD+S+V E+E R ALQ TE GRAAQ+FL+ D G V R LP EL LA+ +R+ + +W LI + K + AL GVAD RDR+ F D VR V D A++ A + DDP+V TP + +RG EISMH++A+EMGV+I +E I KK++ALY +YG AAAA+IPKR++ FRG++F N YWKRD DLM A+++V Sbjct: 18 LGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSV 341
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA) HSP 1 Score: 249 bits (635), Expect = 9.580e-78 Identity = 153/318 (48.11%), Postives = 196/318 (61.64%), Query Frame = 1 Query: 4 GSVLDVIRLVNPEIPSNQASSTFKRLATEL-PDVASACRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRELPAELQLATPEQRTLFVTSWMHGRR---LALIDREKTQQLALIITNEC--------------FGVADARDRVAFGDLVRHVVQPPAHDDGALIVARPMSEDDPSVATPLAQVAHRGPEISMHSIAAEMGVRIKAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 903 GSV+DVI++V ++ AS+ KRL ++ + + C QLRING GKLT CADA+TLVEIVWSLPGK AR FRRTSA TVCRVLGGD+S+V E+E R ALQ+T GRAAQDFL+GD S E PAE +RTL T RR A +D + + A I T + G AD RDR+ F D VR +V GA++ A + DDP+V T +RG EISMHS++++ +RI G E + + VKALY +YG AAAA + KRNVPF G+++ ENTYW RD+DLM++AI V Sbjct: 19 GSVIDVIKIVQ-SCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESS--GSEAPAE-------ERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 326
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA) HSP 1 Score: 247 bits (631), Expect = 3.190e-77 Identity = 149/310 (48.06%), Postives = 195/310 (62.90%), Query Frame = 1 Query: 4 GSVLDVIRLVNPEIPSNQASSTFKRLATEL-PDVASACRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEVSRE----LPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITNECF---GVADARDRVAFGDLVRHVVQPPAHDDG--ALIVARPMSEDDPSVATPLAQVAHRGPEISMHSIAAEMGVRIKAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 903 GSV+DVI++V ++ AS+ KRL ++ D+ + C QLRIN G+LTPCADA+TLVEIVWSLPGK AR FRR SA VCRVLGGD+S+V E+E R ALQ TE GRAAQ FL+ D V E LP EL LA Q++ + + M R A I +K + + E G AD RD + F D VR V D G A++ AR ++ DDP++ TP +RG EISMH++A EM V+I E I K++KALY +YG AAAA IP RN+ FRG+++ N+YW RD DLM+ A+++V Sbjct: 19 GSVIDVIKIVQ-SCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARM--REEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVT----DGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 321
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC) HSP 1 Score: 179 bits (453), Expect = 6.460e-50 Identity = 125/329 (37.99%), Postives = 175/329 (53.19%), Query Frame = 1 Query: 1 MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASACRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEVGRAAQDFLIGDGSVEV----------SRELPAELQLATPEQRTLFVTSWMHGRRLALIDREKTQQLALIITNECFGVADARDRVAFGDLVR----------HVVQPPAHDDGALI--VARPMSEDDPS-----VATPLAQVAHRGPEISMHSIAAEMGVRI-KAGTECLIRKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 903 +GSV+D IR+V E S+ A+++ RL P + QL++NG GK TP ADA+TL+EIVW LPG+ A AFR +CR+LGGD SLV EIE R L TE GRA Q+F + D V + S E P+ + AT E++ F ++ ++ A++ E E G RD + FGD VR +++ DD +I VARP+ + S +ATP + RG E S+ + AA++G+ + + G E I K++ Y +YG A IPKR +RGK F EN YW RD DL++EAIR V Sbjct: 38 LGSVIDTIRMVL-ECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRSGEEPSWFKNATAEEKRAFASTMVNK---AIVSEEVEMYDFCKAKLESVGQFTTRDMIEFGDRVRDAQRRALRAGNMMTSTPVDDTVVISAVARPVDDTIDSATGLPLATPECSESVRGVETSICNEAAKLGICVGEKGGE--IGKELIRRYTKRYGVEAGLNIPKRPTTYRGKPFNENCYWSRDADLVQEAIRIV 360 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175123 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15601 ID=mRNA_15601|Name=jgi.p|Trimin1|175123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=921bp|location=Sequence derived from alignment at Contig_121:262710..263649+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGCAGCGTGCTTGATGTCATACGCCTCGTGAATCCTGAAATACCCTCback to top protein sequence of jgi.p|Trimin1|175123 >Trimin1|175123|e_gw1.121.31.1 ID=Trimin1|175123|e_gw1.121.31.1|Name=jgi.p|Trimin1|175123|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=307bp MGSVLDVIRLVNPEIPSNQASSTFKRLATELPDVASACRQLRINGNGKLTback to top mRNA from alignment at Contig_121:262710..263649+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15601 ID=mRNA_15601|Name=jgi.p|Trimin1|175123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=940bp|location=Sequence derived from alignment at Contig_121:262710..263649+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_121:262710..263649+ >mRNA_15601 ID=mRNA_15601|Name=jgi.p|Trimin1|175123|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=921bp|location=Sequence derived from alignment at Contig_121:262710..263649+ (Tribonema minus UTEX_B_3156 )back to top |