mRNA_15565 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352094
Unique NamemRNA_15565
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: A0A836CNQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ5_9STRA)

HSP 1 Score: 734 bits (1895), Expect = 1.880e-261
Identity = 539/539 (100.00%), Postives = 539/539 (100.00%), Query Frame = 1
Query:    1 MMVLWRHVCYAAAAALAADMCQALRLPGEATTASASSLKVNGHSANGRGANGYSQLDTXXXXXXXXXXXXXXXXXGNGALAVNGYSNXXXXXXXXXXXXANGLANGVYVKPQGLTLVVGNPSEKAVTDGEEVRRPKAGKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKRRTPKRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTRKGRGHSXXXXXXXXXXXXXXXXXXXXRGKSAGKQVSLXXXXXXXXXXXXXXXXXXXXASALTASRTTRTPAHKQRXXXXXXXXXXXXXXXXKATHAMKEKASSPLADQARQGAAERDGPAGSKGAKRDVMERSPRRVVRRANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMELQAAARLSEELQSSEEPALPPALAALDLEGGDLDGELNLANLKLDLLTKALGNLPLDFDSEDEDWLDDLEDDPDFEPEMRKKPAKKAKAADEQVVENQFIVSRQRSGRVQVRLY 1617
            MMVLWRHVCYAAAAALAADMCQALRLPGEATTASASSLKVNGHSANGRGANGYSQLDTXXXXXXXXXXXXXXXXXGNGALAVNGYSNXXXXXXXXXXXXANGLANGVYVKPQGLTLVVGNPSEKAVTDGEEVRRPKAGKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKRRTPKRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTRKGRGHSXXXXXXXXXXXXXXXXXXXXRGKSAGKQVSLXXXXXXXXXXXXXXXXXXXXASALTASRTTRTPAHKQRXXXXXXXXXXXXXXXXKATHAMKEKASSPLADQARQGAAERDGPAGSKGAKRDVMERSPRRVVRRANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMELQAAARLSEELQSSEEPALPPALAALDLEGGDLDGELNLANLKLDLLTKALGNLPLDFDSEDEDWLDDLEDDPDFEPEMRKKPAKKAKAADEQVVENQFIVSRQRSGRVQVRLY
Sbjct:    1 MMVLWRHVCYAAAAALAADMCQALRLPGEATTASASSLKVNGHSANGRGANGYSQLDTXXXXXXXXXXXXXXXXXGNGALAVNGYSNXXXXXXXXXXXXANGLANGVYVKPQGLTLVVGNPSEKAVTDGEEVRRPKAGKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKRRTPKRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTRKGRGHSXXXXXXXXXXXXXXXXXXXXRGKSAGKQVSLXXXXXXXXXXXXXXXXXXXXASALTASRTTRTPAHKQRXXXXXXXXXXXXXXXXKATHAMKEKASSPLADQARQGAAERDGPAGSKGAKRDVMERSPRRVVRRANKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMELQAAARLSEELQSSEEPALPPALAALDLEGGDLDGELNLANLKLDLLTKALGNLPLDFDSEDEDWLDDLEDDPDFEPEMRKKPAKKAKAADEQVVENQFIVSRQRSGRVQVRLY 539          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: D7FJE6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE6_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.100e-18
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  412 GKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKRRTP--KRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTRKG 756
            G+ HT  SKAKISA+NKGK  WN G   S ETR +IAEG R A   ++ + A  LGMT+EEY+  KRR P  KRD       ++EET+ KISARLK KW+DP++R+ R   +P RKG
Sbjct:   33 GRPHTVASKAKISAANKGKKPWNVGVGHSEETRRKIAEGARNAARKRREKTAESLGMTLEEYEEMKRRKPAGKRDPT-----VTEETRKKISARLKAKWQDPSYRERRKQCMPNRKG 144          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: A0A7S3UUP6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUP6_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-15
Identity = 60/115 (52.17%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  403 PKAGKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGM-TVEEYDASKRRTPKRDTKGGQVK---LSEETKAKISARLKEKWKDPAFRKERLA 735
            P  GK HTAES+AKISA+NKGK  WNKGR  SPET ARI E TR A+  KK +KA ELG  ++E Y+   ++  +R  K G      LS+ETK KIS +LK +W DP +R  + A
Sbjct:   10 PAGGKPHTAESRAKISAANKGKTPWNKGRKHSPETIARIKERTRIAMLKKKEKKALELGYESLEAYEEVLQKEKERKKKAGGPNDRTLSQETKKKISEKLKARWADPVYRATQTA 124          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: A0A7S2RAE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RAE1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.570e-14
Identity = 59/124 (47.58%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  421 HTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKR---------RTPKRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTRKGRGH 765
            HT  SKAKISA+NKGK  WNKG+  S E +ARIAEG RR    +   K  +LG+T EE++A K+         R  ++  KGG    +E TKAKIS+ LKEKW +   +K R  N P RKG  H
Sbjct:    2 HTTASKAKISAANKGKVPWNKGKHRSEEVKARIAEGVRRKNRERFLAKLVDLGLTEEEFEAQKKEERRKKDAERLARKTAKGGYTPTAE-TKAKISSILKEKWANGEIKK-REYNGPYRKGFKH 123          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: A0A4D9D1W4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.680e-13
Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  412 GKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKR-----RTPKRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANI 741
            G+ HT ES+AKISA+NKGK  WNKG   S ET+ARI E T++A+ A+K  K A +G+T+EE++A K         +R      V  S + KA++S R++E+W+DPA+R++ L ++
Sbjct:  190 GRPHTPESRAKISAANKGKRPWNKGVGHSDETKARIRERTKQAMEARKRAKLAAMGLTLEEFEARKAAEAAAEKARRQEVKRNVTQSPDYKARLSQRMRERWQDPAYREKALKHL 304          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: A0A7R9WD30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WD30_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.690e-13
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 1
Query:  394 VRRPKAGKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKRRTPKRD--------TKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTRK 753
            VR    G +HT  SKAKISA+NKGK  WNKG+  S E +ARIA G R+    +   K  ++GMT EEY+A+K+   +R         T+ G  + +EETKAKISA LKEKW     +K + +    RK
Sbjct:  180 VRTAAGGYSHTEASKAKISAANKGKVPWNKGKGRSEEVKARIAAGVRKRNRERFLAKLKDMGMTEEEYEANKKAERRRKDAERRARRTENGGYRPTEETKAKISAILKEKWAKGEVKKRKPSGGARRK 307          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: K0RCK9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RCK9_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 1.080e-12
Identity = 66/138 (47.83%), Postives = 84/138 (60.87%), Query Frame = 1
Query:  346 LVVGNPSEKAVTDGEEVRRPKA--GKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKR---------RTPKRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKE 726
            LV GNP  +A T   +V RP A  G  HT ESKAKISA+NKGK AWNKG++ S ETRARIAEG R+    +   K AE G+T EE+   K+         R  ++  KGG    +EETK KIS  LKEK+ + A +++
Sbjct:  223 LVNGNPRAEAGT-ALDVPRPTANGGFTHTTESKAKISAANKGKTAWNKGKARSDETRARIAEGVRKRNRERFLAKLAEEGITEEEHHERKKAERXXXDAERRARKTAKGGYTP-TEETKRKISKVLKEKYANGAVKRK 358          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: A0A7S2YBV4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBV4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.710e-10
Identity = 60/162 (37.04%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  301 NGLANGVYVKPQGLTLVVGNPSEKAVTDGEEVRRP--KAGKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKRRTPK--------RDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTRKG 756
            NG  NG  +    L  V    +  A T   +V  P    G  HT  SKAKISA+NKGK  WNKGR+ SPE +ARIA G R     +  +K A++G+T EEY+  K+   +        R T+ G  + + ET+ KIS  LKEK+ +   +++ +     R+G
Sbjct:   23 NGAGNGTAMVGGVLADVESLSARLAATSRSDVPLPTENGGYTHTKASKAKISAANKGKTPWNKGRTRSPEEKARIAAGVRAKNRERFLQKLADMGLTEEEYEIQKKEERRKKDAERRARKTENGGFRPTAETRQKISKVLKEKYANGEIKRKPVDPSKVRRG 184          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: A0A448ZQ35_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ35_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.030e-10
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  343 TLVVGNPSEK-AVTDGEEVRRPKA--GKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKRRTPK--------RDTKGGQVKLSEETKAKISARLKEK 699
            T ++G   EK A  D  ++  P A  G +HT  S+AKISA+NKGK  WNKG++ SPE RARIA G R        +K  ++GMT EEY+A K+   +        R T  G  + +EETK KIS  LKEK
Sbjct:  119 TALLGKMKEKSAEKDNADLPHPTANGGYSHTKASRAKISAANKGKTPWNKGKARSPEVRARIAAGVRARNRQVFLKKLEDIGMTEEEYEAKKKEERRIKEAERRSRRTANGGYRPTEETKKKISRILKEK 248          
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Match: A0A6U6K8I3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6K8I3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.920e-10
Identity = 52/106 (49.06%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  412 GKAHTAESKAKISASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYDASKR---------RTPKRDTKGGQVKLSEETKAKISARLKEKW 702
            G +HT  SKAKISA+NKGK  WNKG+  S E + RIAEG R+    +   K A++G+T EEY+             R  +R  KGG  + +EETKAKISA LKEKW
Sbjct:  208 GYSHTKASKAKISAANKGKVPWNKGKGRSEEVKRRIAEGVRKRNRERFLAKLADMGVTEEEYEQXXXXXXXXXXXXRRARRTEKGG-YRPTEETKAKISAVLKEKW 312          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352094 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A836CNQ5_9STRA1.880e-261100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJE6_ECTSI1.100e-1852.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UUP6_HETAK1.240e-1552.17Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2RAE1_9STRA8.570e-1447.58Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A4D9D1W4_9STRA2.680e-1344.35Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7R9WD30_9STRA8.690e-1344.53Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
K0RCK9_THAOC1.080e-1247.83Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2YBV4_9STRA1.710e-1037.04Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A448ZQ35_9STRA2.030e-1044.62Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6U6K8I3_9STRA2.920e-1049.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_108contigContig_108:362626..371379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352094|estExt_Genemark1.C_Ctg_1080029
Max annot lvl2759|Eukaryota
EggNOG OGs2D7RE@1|root,2S59J@2759|Eukaryota
Evalue1.57e-19
Seed ortholog2880.D7FJE6
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionNuclease associated modular domain 3
Ec32 orthologEc-14_006060.1
TranscriptId352416
TrackFilteredModels1
ProteinId352094
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352094gene_15565Tribonema minus UTEX_B_3156 geneContig_108 362626..371379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352094Trimin1|352094|estExt_Genemark1.C_Ctg_1080029Tribonema minus UTEX_B_3156 polypeptideContig_108 362711..371379 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15565_11exon_15565_11Tribonema minus UTEX_B_3156 exonContig_108 362626..363055 -
exon_15565_10exon_15565_10Tribonema minus UTEX_B_3156 exonContig_108 363506..363602 -
exon_15565_9exon_15565_9Tribonema minus UTEX_B_3156 exonContig_108 364409..364512 -
exon_15565_8exon_15565_8Tribonema minus UTEX_B_3156 exonContig_108 364854..364935 -
exon_15565_7exon_15565_7Tribonema minus UTEX_B_3156 exonContig_108 365763..365885 -
exon_15565_6exon_15565_6Tribonema minus UTEX_B_3156 exonContig_108 366996..367073 -
exon_15565_5exon_15565_5Tribonema minus UTEX_B_3156 exonContig_108 367499..367620 -
exon_15565_4exon_15565_4Tribonema minus UTEX_B_3156 exonContig_108 368291..368404 -
exon_15565_3exon_15565_3Tribonema minus UTEX_B_3156 exonContig_108 369457..369549 -
exon_15565_2exon_15565_2Tribonema minus UTEX_B_3156 exonContig_108 370033..370412 -
exon_15565_1exon_15565_1Tribonema minus UTEX_B_3156 exonContig_108 371298..371379 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15565UTR3_15565Tribonema minus UTEX_B_3156 three_prime_UTRContig_108 362626..362710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15565CDS_15565Tribonema minus UTEX_B_3156 CDSContig_108 371298..371379 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15565 ID=mRNA_15565|Name=jgi.p|Trimin1|352094|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1705bp|location=Sequence derived from alignment at Contig_108:362626..371379- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGTGCTGTGGCGGCACGTGTGCTATGCGGCTGCTGCAGCACTGGC
GGCAGACATGTGTCAGGCATTGCGGCTGCCAGGCGAGGCAACAACGGCGA
GTGCTTCATCATTGAAGGTGAATGGCCACAGTGCCAATGGTCGTGGCGCT
AACGGCTATAGCCAGCTGGACACCAATGGCTACTCTCAGCTTGGCGCCAA
TGGCCGCAGCAGCAGCAGCAGCAGCGGCAATGGTGCTCTGGCCGTGAATG
GCTACTCAAACGGTCACACGGTCAATGGGAATGGAGCCAATGGCTACGCG
AATGGGCTTGCGAATGGCGTTTATGTTAAGCCCCAGGGGCTGACACTGGT
TGTGGGGAACCCCAGTGAGAAGGCGGTTACTGACGGTGAGGAGGTGCGGC
GGCCTAAGGCTGGCAAAGCGCATACAGCGGAGAGCAAGGCCAAAATCAGC
GCCAGCAACAAGGGCAAAGCGGCATGGAACAAGGGGCGCAGCATGAGTCC
TGAGACACGGGCTAGGATTGCGGAGGGGACAAGACGAGCTGTGGCAGCAA
AGAAGGCGCGGAAGGCTGCGGAGCTCGGAATGACAGTGGAGGAGTATGAT
GCCTCCAAACGGCGCACCCCCAAACGGGACACCAAGGGGGGGCAAGTGAA
GCTGAGCGAGGAGACAAAGGCAAAGATCAGCGCGCGGCTGAAGGAGAAGT
GGAAGGATCCGGCCTTCAGGAAGGAGCGCCTGGCTAATATACCTACTCGG
AAGGGCAGAGGCCACTCGGATGAGACCAAGGCAAAGATCAGTGCCAAGGT
GAAGCAGCTGTGGCAAGATCCTGAGTACAGGGGCAAGTCTGCTGGCAAGC
AGGTGTCGCTGGAGACCAGGGAGAAGCTTTCTCGGGTTCTGAAGGAGAAG
TGGACTGATCCCGTTTTCCGGGCCAGCGCGCTGACAGCCAGCAGGACCAC
ACGCACCCCTGCTCACAAGCAACGCATCAGCGATGCCATCAGGGCCAAAT
GGGCAGACCCCGAGTACCGAGAAAAGGCCACACACGCCATGAAGGAGAAG
GCAAGTTCGCCGCTTGCAGACCAGGCTCGGCAGGGGGCTGCGGAACGGGA
CGGGCCAGCTGGGAGCAAAGGTGCCAAGCGTGATGTCATGGAGAGGTCAC
CCCGAAGAGTTGTGCGAAGGGCCAACAAGAAAATGCTGACGGAGGAAGAG
GAAGACCAGCTCATACTGCGCAAGGAGCGGGCAGCTGACCGAAGGGCAGC
CGTTAGGCAGCAGCAGGCGATGGAGCTGCAAGCCGCCGCAAGATTGTCAG
AAGAGCTGCAATCGTCAGAGGAACCAGCGTTACCGCCGGCGCTGGCGGCA
CTGGACCTTGAAGGCGGTGACCTGGACGGAGAGTTGAACTTGGCAAACCT
CAAGTTGGACCTCTTGACCAAAGCCCTCGGCAACCTTCCGCTCGACTTTG
ACAGCGAGGATGAAGACTGGTTGGATGACCTAGAGGACGATCCAGATTTT
GAGCCAGAAATGCGCAAGAAACCGGCGAAAAAGGCCAAGGCCGCAGACGA
GCAAGTCGTCGAAAACCAGTTTATCGTGTCACGGCAGCGGTCGGGCAGAG
TGCAAGTTCGCCTGTACTGAGGCTGGCCTGCTTCTGTACTCTCTGTGGAA
TGAGAGCTCGGCTGTGATTCATGCTTGAAACACCTGGGGACTGTGTGTCT
GTTGC
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protein sequence of jgi.p|Trimin1|352094

>Trimin1|352094|estExt_Genemark1.C_Ctg_1080029 ID=Trimin1|352094|estExt_Genemark1.C_Ctg_1080029|Name=jgi.p|Trimin1|352094|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=540bp
MMVLWRHVCYAAAAALAADMCQALRLPGEATTASASSLKVNGHSANGRGA
NGYSQLDTNGYSQLGANGRSSSSSSGNGALAVNGYSNGHTVNGNGANGYA
NGLANGVYVKPQGLTLVVGNPSEKAVTDGEEVRRPKAGKAHTAESKAKIS
ASNKGKAAWNKGRSMSPETRARIAEGTRRAVAAKKARKAAELGMTVEEYD
ASKRRTPKRDTKGGQVKLSEETKAKISARLKEKWKDPAFRKERLANIPTR
KGRGHSDETKAKISAKVKQLWQDPEYRGKSAGKQVSLETREKLSRVLKEK
WTDPVFRASALTASRTTRTPAHKQRISDAIRAKWADPEYREKATHAMKEK
ASSPLADQARQGAAERDGPAGSKGAKRDVMERSPRRVVRRANKKMLTEEE
EDQLILRKERAADRRAAVRQQQAMELQAAARLSEELQSSEEPALPPALAA
LDLEGGDLDGELNLANLKLDLLTKALGNLPLDFDSEDEDWLDDLEDDPDF
EPEMRKKPAKKAKAADEQVVENQFIVSRQRSGRVQVRLY*
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mRNA from alignment at Contig_108:362626..371379-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15565 ID=mRNA_15565|Name=jgi.p|Trimin1|352094|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8754bp|location=Sequence derived from alignment at Contig_108:362626..371379- (Tribonema minus UTEX_B_3156 )
ATGATGGTGCTGTGGCGGCACGTGTGCTATGCGGCTGCTGCAGCACTGGC GGCAGACATGTGTCAGGCATTGCGGCTGCCAGGTCCACAGGTGTGTAGTA AAACGGGTGCTGGGCAAGTACTGCAACAAAAAAAAATCAATGCAGAGTAC AAGCACCTGTGCTCATTCCAGCAACGCGGAGCGAGTGCTTGTCTCTATCT GCTTGTGGTGGTGCGAGCTCAATGGTTCGCTTGATGTGGACGAAAGCATT GTCGAACTCACCATTGAGTTATATATTGATCAGCTGTTGCGTGTGAGACA CAATCAATGTGCACGACCGCATTTGTACGCAACATAGTCAACTTTGTGGC TCACTCTGAGCTGCGAGCCATCGAACACATACCATGGTGTAAGGTGAGAG TTGAGCGGGAGTCCTCATTTCACTACTTGCTTGTGGCTCATCCCCCATGC GATAATAATGGTTATCGTCTATGTCAATGCCTCAGCTTTTTGAGACGCTG CAGCGAACAGCTTCCGCAGGTGTGCGGTCCTCCTCACGTCGAGCGTCACA TTGAAGTTGAGGTTGCATTCGCCTGGCCCAAAAGGGACTATGGAGCGCAG GCATGTTCTGACATCTCGGTATGTTGTCTGTACTTTGCCTGTTTCTTCAT GGACGTTGCGACTGCAGATCAGCCGTTCATTTGTAGTAGAGCGTGTAGTT GAGGTTCACCTTGAGGTTTTACCTTGTACTTTGGTGTTGCAAGCCGATCC ACCTGACACAAAATTTGTCATTGTGTGCGCACCTGCAATTTATTCCTGCA GACATGCTATCACAGCAAGTCAGCACATCCTGTATGCCGGCCGTTGCCAC GTTGCTATCACCACCCACATCGGCGGAGGCAGCTGCCATTGCTGGCAGCA GCGGGGGGGGGCCAGGGGCCATATAGGGGGGCGGGGCATCCGCTGCACGC TGTTGCCTATGCGGCAGGCGAGGCAACAACGGCGAGTGCTTCATCATTGA AGGTGAATGGCCACAGTGCCAATGGTCGTGGCGCTAACGGCTATAGCCAG CTGGACACCAATGGCTACTCTCAGCTTGGCGCCAATGGCCGCAGCAGCAG CAGCAGCAGCGGCAATGGTGCTCTGGCCGTGAATGGCTACTCAAACGGTC ACACGGTCAATGGGAATGGAGCCAATGGCTACGCGAATGGGCTTGCGAAT GGCGTTTATGTTAAGCCCCAGGGGCTGACACTGGTTGTGGGGAACCCCAG TGAGAAGGCGGTTACTGACGGTGAGGAGGTGCGGCGGCCTAAGGCTGGCA AAGCGCATACAGCGGAGAGCAAGGCCAAAATCAGCGCCAGCAACAAGGTG CGTGCACATTGTGTCATTTTATAACAGCAAGGAGCATCAAAGACATGATT GATTTGAGGGCGTTTCTGCATCTTGGCTGCTGTGTAGCTCGTTCAAATGT CTAGAAGCATACAACGTGCGCATTTGCACGTTAATGCGAGACCATTGTTC ATATTGGGGCAATGTGCCGGTCATCTGTACATTGACAGTTCATGACTCCT TGCAGCTACGGTGTATGTTGTGTATTATTCAGGGCACGGGCAGGTCATCT GATGCTGTACTGGCACGTCTGATCTCAGCTCATGCTGGTTGAACTCATCA TTGCTGCCGTTTGCCATTGCAATTTTGTTTCGGGTAGTTGATGCTTGCGT CAGACATAGCCTGGCCTGAATGCAACTCGCACTGCGTGTACTCAATATAC GCACAAAAGTCTTCTTCTAGCAAGTTCATCATCCTGCAAGTGGCATTGAG AAAATAGGATCACACGAATCTGCATGGCAGGGCAAAGCGGCATGGAACAA GGGGCGCAGCATGAGTCCTGAGACACGGGCTAGGATTGCGGAGGGGACAA GACGAGCTGTGGCAGCAAAGAAGGTATGTATGCGCAGGGTTATAATTAGG GTCAGAGAGTCAAGGGGTAGGGTTTGGGTTAGGACCAGGGCGTGCGCACT CGTCGGTTTCTGTCTGGTTGTAACAATATGTACGACTCTGGATTCAATAC CTTGCTGCATATGTTCAAGAAGGAGTTGAAACCGTCACCACATTTGCAAT GACACTGCACAGCAAGGCTGGCAAGCTGTGCGCACTTGCGGCATGCGGTA ATATACTGTGGGACGGGATGTTCCATCAGCATGACATGTGATGTGCATAA AGATAATGCGCTACTTTACATTGTGCGTCACTCTGATGTATTGGGCACAA ATCCTGGTGCTTTGAACATGTTGAGTCCTGGACCGGTCAAGTATGGTGAT GAGCTCATGTCATTGGCACGCTCTGCAGTGGCAAGGTGCGCAGGTGTGAC AAGCTTGTCTCAAAATCAGACGACGTTGTGGTTGGTGATAATGTGTGAAG TAATGCCTTCACCAGGTTGTAATTTGTGAAGTAATGCCTTCACCAGGTTG CCAGCATCGACTGTGGAGTGAGCCACTACTTGCGTGCCACGCATGTGTTA TACCGTGCATTTGTTATCTTGACGCCTTGTGAATGTCTGGTGGCTGAGGG GCATATGCAGTTGAACATGCAGTTGAACTTGCATCATCACCTCGTCACTA ACATACAACACTTAGATCTGGTGCGTTGGTGCCGCTGATAGTCCGTTCGC GGTTCATTATTCCATCCATCAGTAGCTGTCGCAACAAGCTGAAGCTGTGC GAGCACATTGAGCAAGCCCACAGTGCTCTTCTGGCAGCAGGTGACGGTAC TGATGTTATTATTCTACTATTAGTTCTGTCAATGGCGATGTCATCTGCAC ACTGTCAATGGCTTGTGACATCCAGGATCTGATGCTTTGGTGCGTCGGTA GCCGCTTTGCCAATACATTCATTGCAGATATATGATTTGCTGTACGCAAT CTGTACTGTGAAGCTTGCGTTGCAGTGCATCACTGTACTCAATGCTGTAC TCAATGTGTACCGCTTGCCTCACAGGCGCGGAAGGCTGCGGAGCTCGGAA TGACAGTGGAGGAGTATGATGCCTCCAAACGGCGCACCCCCAAACGGGAC ACCAAGGGGGGGCAAGTGAAGCTGAGCGAGGAGACAAAGGTATTCATGTA TAATGGCTTCTACGTTATACATGCCACTCGCCCGGAACAATGATTACTGA ATGGCAAGAAGAGTTGATGGCCAGACGAGTGACATTTGGTGCGCGTACAC ATGCTGTCTTGTCACAAGAAGCACAGCAAGGTTTGGGGCGCGCTGGTTTG ACTGCTGACACAATTTTTGCAATCTCTGCTAGAGAGCTTGCCCGATCTTA CTGATATGCAGGTAAAAAGAGCCCTTTTGGTATCGGCCTGAGTACTTCCC TTATGCCCGCTAGGAGCTCCAACATTTGAAGTGCTCTTGTCCATGTCACA GTCTCGCTGGGCCGCTGAGATACTGCACACTACACACAATGACTGTATGG GTTAGGGTGCAATATGCATGCTCTGAAGATGTAACTTGGACCCTTTGAAG AGCGTATGTGCTGTGCTGTGTACCTATGCATTAGTGCACCTTTCAAGCAC AAGTCCCATTTTGCCTGCCCCCAACCCTAAGCTTGCCAGAAACCCCACTC GTCACCTTCGTATCTCTCCCAGCAGTGCGCACTATTGAGCAGTGCAAACA TACCGCAAGTCAAGTGTTGAAGTTGTCGCTGATGTTTGCGGCCACGTTCA TAGGGCCCTCAGTAACTGAACATGGAATATTCTCACATGTGTGATGCTGC GGTACACAGGCAAAGATCAGCGCGCGGCTGAAGGAGAAGTGGAAGGATCC GGCCTTCAGGAAGGAGCGCCTGGCTAATATACCTACTCGGAAGGGCAGAG GCCACTCGGATGAGACCAAGGCAAAGATCAGGTACATGCATACGCAGTGT AGAGTACACGTGCACTTGTTGAATACGCTTGAGTGCATAAGCAGATGGGA GGTACAGTACATGCACACCTCTGCATCATGTACACAGCAGTTGTTAAATC GGCTCGAATGCCCGGCTTTCACGAGGCTGTGATTGGCTTTATTGTTGGCA CACGGTGTTTTTTTAGGGCAAGGTGGTGGCGTAATGATGAGGTGTCTCAT GTTGAGATGTCTCACCTCATCATTACCATTCCCATGCACCGCTCGCCCGA CACGTTGCAGAAGGCGCATAGTCAGCACATTGTTCTTCAACAAATTATTG AAGTATGTTTGCTTACGCATCACACTATACTTCAAACTTTGCTGACATGC GGGATGGGAGCGGCAGTTCAATCAAATGTGCTTGCTGCGCAAATTGTGCT TTGCAGTGCCAAGGTGAAGCAGCTGTGGCAAGATCCTGAGTACAGGGGCA AGTCTGCTGGCAAGCAGGTGTCGCTGGAGACCAGGTGAGCACTGCCACAA TATACATGCACGCATACATGCGCAAAGTGCATACATACTGAACATGCATC ATACATGAGTACATACCTGTGTCTTACATACATACACTACGCTGTGGCAA GCAGGTGTTGCTGGAGACCAGGTGAGCATGCATACTTACAAGTGGCATAC TTCAGAAGTACATACATACACGCATACATGAATATATGCCTGTGTCATAC ATACATACACTAATACGTGACATAATAGCATACATCATACATGCATATGA CATGTGAACTTAGCTGGCAAGCAGGTGTCGCTGGAGACCAGGTGAGCACT GCCACATGAGCACTGCCACAATGTACATGCATGCACACTTCAAGTGCATA CATTCTGTAAACTCACTATCCTCACACGTACATGAATACATACTCATGTC TTGCATACAAAGTACACTGTCACGTAACGTTATGTTCTAAGTGTGTACAT GCATGCACATGAGCGTCAACATATATATATATATAGCCACGACACCACTT TGTGGTGACGTGGCTATACCTCAGCTGCCCACCTTGCTGAAAGTGCTGAG GCCGTGAAGTGATCGCCGACGGTATTCTGTGAGTAGGCTCACAGACAAGA CGTGCGAACATGAAGTCTTCCTGTCCAGTCTTTTTTCACTTGCTGCAGGG TTATGACTTTTGGCTTGTTCGGTGGCACACCGATATGTGTATGATTTAGC TTGTGGTTGTGTGCATCAGTCAGATTGACCTACTGATTTTGCACAACACA ACATGTACCAGCACGAATTCAACTCGGCAACGCTAGCTTCTGTATCTAAT GCTTATGCGGTTGCAGCTCAGCATGCCAGGCATATGTACATAGCTGCTCA CGGCCACAATCTGGTTGGGGATCAGCTCCGATCTTGAGCTGTCTGGAATT GAGCGGGCTTGAGTTGAGCGAACCTGTGCTGCCTGATACTTTCTGTCCTC CACCGCATGAAACGACATAATGCTAAATCGCTACTAATGCAGCATCAGCA GTACCGCGCATGCTGCAGCAACGCTCATCTAATGCGCAGATTCCTACAGA CTCAATAACAGCGTGCACCATCACATTTGTGAATGATTGCGCAGGGAGAA GCTTTCTCGGGTTCTGAAGGAGAAGTGGACTGATCCCGTTTTCCGGGCCA GCGCGCTGACAGCCAGCAGGACCACACGCACCCCTGCTCACAAGCAACGC ATCAGCGATGCCATCAGGTACATACGAATGCTATCAGCGTAAAGAAGTGT TGTTTGCTTGGGCCACGTGACAGAAGCGGCGGCCGCTGGCGAGTGAACTT TGGCCCTACTGGATGTGTGGATTCAATCTTAAGCGTGCATACGCACGTCA GTGCGTCCTACTTGTTCACAGCAGGTGTGTAGTTGTGGATTCCAAGCAGC AGCTGCACATGCCCGCACACAAGCACCACTTACGACGTATAACGCCATCA CGCGAGCTGTTTGCTGGCCTCTTCCCATGTACTTACTGTTTTCTTGTCAT TACGCGACATCATCCAAGTCTGGTGGTGCACAAGCATGGCTGTATTCACG TCTTGACACTTCTTCGATCTGCCTACATCACCGCGTTGCTTTATGATCAA AGTACATTGCCGCACCTGTCTGAAGATAAAGAACACCCATGCCTCGAACG CTCAAAGCTTGCACACAGAAGTCTTTTTGACTGGTGGATACGGTGGTACT GTTTGACTCGTGGCCAATTGCTGCAGCAGCGGCGACCACAGTTATTGTTG GAAGGCACTTGCGGCTAACCATCCCTTGTCACCTAGAGCTCTACGATCTT TTGATTCGTATTCATAAAGCAGGTGGACAGCAACTGGTTCAACTGTCGTA TCAGCCTTTTTTGGCTGGCCTGTGAGTCGAAGTTTCCTGCGCTTCCATTC TAGCTACACTTTTGCAAAAAGCGCACAGAGTGCTGCGCACGCTGTCGTGT GCATGCTTTGTTAAATTCTGACATGTCGTCAACTGACACACATGACACAA TGATGCGCCCTCGGCTCTGTCGCCATGTACGTGCACCTGTGCAGGGCCAA ATGGGCAGACCCCGAGTACCGAGAAAAGGCCACACACGCCATGAAGGAGA AGGCAAGTTCGCCGCTTGCAGACCAGGTCAGGCTCGTGGCCATCTCTTGT AGTTCTTGCGGACCAGGCGCCAGTGACGTGAATGATATCGAGTTTAGGTC TACTTCGATGTGACGTTGAATACAATGGAGTTATATCATTGAAGTTTGCA AGTGTCATGACAAAGTGTCACGACAGGAGTGTTGTTGCAGATCCCAACTT GGACCCGGTGCTGACAACGTCAAGTTGGATCTTTGCTAACTTGTGTTTTT TTTCCAGACAAGTGCACTACATGCGCCACCCCTTCGCTGTGTCACTTGCG GCTGCTACGCCAATCTACACTTGTGCCATTCAATTGACCAAGCACTTCTT GTTGTTATTGAGTGCAGGCTCGGCAGGGGGCTGCGGAACGGGACGGGCCA GCTGGGAGCAAAGGTGCCAAGCGTGATGTCATGGAGAGGTCACCCCGAAG AGTTGTGCGAAGGGCCAACAAGTGAGTTTAAGAGTTGCGCGAAAGGGCCA ACAAGTGAGGCGCTCTCTTTAAACCTGCAGTACATGCATGCATCGTTAAA ACTGGAGTGGTCAGGATTCGTTGATTCTCTGGACTGTTGTCACCTTGGGC TGGCTGTTATTAGAGCGTGAACGCCACGTGTTTGTTGCTGACACTCCAAA AATTGCTGATAGCTTGATGATAGAGTTGTACAAAGATAGAAGGACGTGTC TTCAATTTTTCAGTATTTGTGGAGTTGTCACCCCCAGCTGGTAAAAGCCG TACATCAAACATGCAACAGATGGTGTTATCACAATTGTCCTGCTCTTTTG TGCTGTAACAAGCTGTGACAACCTCCACAAGCTGAATGCTGTTGCCATGT CTACTCTGAAAGAGAGCCTGGCTGGCTGCCTATTACTTTGCGCAATTCCT GCAAAGGCATTCGGGCGAAGGCATGTTGCTCTACTGCAGCAGAAAGCGCA ATTGCTCAATTGGGTCTCTCTGCTACATCATGATGTTTTCGCCACTAGTG AATGATACTTCTCTATCCGTTTGGCAGTTGAGATTGCTCTCACTCATGTT CAGGGCAATGTCTCGTATCTGACACCATACAATACTTCAAGCACTTGCCG TTCTCCGCATGCATGTCGCAAGTTGTTGAGCAGCCTGACTCCCAAGTGTC CGTAGCGGATTCAGAAGGGATTGTTTGACTTGATCGCATTGGCCACGTTA TCGCATTGGCCACATTGATCGCATCTTATTGGCCGTGCCACTCAAACCAC TCAATTCGTGCTCCTCACCATGTTTAGGAAAATGCTGACGGAGGAAGAGG AAGACCAGCTCATACTGCGCAAGGAGCGGGCAGCTGACCGAAGGGCAGCC GTTAGGCAGCAGCAGGCGATGGAGGTATGTATACCTCTTGAAGTACCCAT CTTCAAGAGCGTACCTGCCCTGTGTTCACATCGCCACCATGCTGCAGCTC TTTGCTGACAGCCACCAGATTTGGCATGCGCATTCTGTGGTAATGTGTGT GCTGCCAGTTGTGTACTGTTGATTTTTTTTTGCATGTGATGGTGTGTTTA CTGGTGAATCTGTAGCCTGTGCACACTATGAAATTTTATGCCACTCCGAC GCAGCATGTCACATTGCTCCAGCACTCTACCAATCACTCGGAGGCCACAG TCTTCCTTGTGAAGTATCGCGCTTGCGGTGGTGTGGCTGTTTACTGGTGC CTTGAATTCAGCAACTTCACTGATTTCTGTAGGCTTGTTGACCCCGGGAA AGTCGCCACATGAAGTAAAGGCTGGCCAACATCCAATTTTCCTCTTTTCA TGATTTCTGTGTCGCCTTCTGCAGCTGCAAGCCGCCGCAAGATTGTCAGA AGAGCTGCAATCGTCAGAGGAACCAGCGTTACCGCCGGCGCTGGCGGCAC TGGACCTTGAAGGCGGTGACCTGGACGGAGAGTTGAACTTGGCAAACCTC AAGTTGGACCTCTTGACCAAAGCCCTCGGCAACCTTCCGCTCGACTTTGA CAGCGAGGATGAAGACTGGTTGGATGACCTAGAGGACGATCCAGATTTTG AGCCAGAAATGCGCAAGAAACCGGCGAAAAAGGCCAAGGCCGCAGACGAG CAAGTCGTCGAAAACCAGTTTATCGTGTCACGGCAGCGGTCGGGCAGAGT GCAAGTTCGCCTGTACTGAGGCTGGCCTGCTTCTGTACTCTCTGTGGAAT GAGAGCTCGGCTGTGATTCATGCTTGAAACACCTGGGGACTGTGTGTCTG TTGC
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Coding sequence (CDS) from alignment at Contig_108:362626..371379-

>mRNA_15565 ID=mRNA_15565|Name=jgi.p|Trimin1|352094|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1620bp|location=Sequence derived from alignment at Contig_108:362626..371379- (Tribonema minus UTEX_B_3156 )
ATGATGGTGCTGTGGCGGCACGTGTGCTATGCGGCTGCTGCAGCACTGGC
GGCAGACATGTGTCAGGCATTGCGGCTGCCAGGCGAGGCAACAACGGCGA
GTGCTTCATCATTGAAGGTGAATGGCCACAGTGCCAATGGTCGTGGCGCT
AACGGCTATAGCCAGCTGGACACCAATGGCTACTCTCAGCTTGGCGCCAA
TGGCCGCAGCAGCAGCAGCAGCAGCGGCAATGGTGCTCTGGCCGTGAATG
GCTACTCAAACGGTCACACGGTCAATGGGAATGGAGCCAATGGCTACGCG
AATGGGCTTGCGAATGGCGTTTATGTTAAGCCCCAGGGGCTGACACTGGT
TGTGGGGAACCCCAGTGAGAAGGCGGTTACTGACGGTGAGGAGGTGCGGC
GGCCTAAGGCTGGCAAAGCGCATACAGCGGAGAGCAAGGCCAAAATCAGC
GCCAGCAACAAGGGCAAAGCGGCATGGAACAAGGGGCGCAGCATGAGTCC
TGAGACACGGGCTAGGATTGCGGAGGGGACAAGACGAGCTGTGGCAGCAA
AGAAGGCGCGGAAGGCTGCGGAGCTCGGAATGACAGTGGAGGAGTATGAT
GCCTCCAAACGGCGCACCCCCAAACGGGACACCAAGGGGGGGCAAGTGAA
GCTGAGCGAGGAGACAAAGGCAAAGATCAGCGCGCGGCTGAAGGAGAAGT
GGAAGGATCCGGCCTTCAGGAAGGAGCGCCTGGCTAATATACCTACTCGG
AAGGGCAGAGGCCACTCGGATGAGACCAAGGCAAAGATCAGTGCCAAGGT
GAAGCAGCTGTGGCAAGATCCTGAGTACAGGGGCAAGTCTGCTGGCAAGC
AGGTGTCGCTGGAGACCAGGGAGAAGCTTTCTCGGGTTCTGAAGGAGAAG
TGGACTGATCCCGTTTTCCGGGCCAGCGCGCTGACAGCCAGCAGGACCAC
ACGCACCCCTGCTCACAAGCAACGCATCAGCGATGCCATCAGGGCCAAAT
GGGCAGACCCCGAGTACCGAGAAAAGGCCACACACGCCATGAAGGAGAAG
GCAAGTTCGCCGCTTGCAGACCAGGCTCGGCAGGGGGCTGCGGAACGGGA
CGGGCCAGCTGGGAGCAAAGGTGCCAAGCGTGATGTCATGGAGAGGTCAC
CCCGAAGAGTTGTGCGAAGGGCCAACAAGAAAATGCTGACGGAGGAAGAG
GAAGACCAGCTCATACTGCGCAAGGAGCGGGCAGCTGACCGAAGGGCAGC
CGTTAGGCAGCAGCAGGCGATGGAGCTGCAAGCCGCCGCAAGATTGTCAG
AAGAGCTGCAATCGTCAGAGGAACCAGCGTTACCGCCGGCGCTGGCGGCA
CTGGACCTTGAAGGCGGTGACCTGGACGGAGAGTTGAACTTGGCAAACCT
CAAGTTGGACCTCTTGACCAAAGCCCTCGGCAACCTTCCGCTCGACTTTG
ACAGCGAGGATGAAGACTGGTTGGATGACCTAGAGGACGATCCAGATTTT
GAGCCAGAAATGCGCAAGAAACCGGCGAAAAAGGCCAAGGCCGCAGACGA
GCAAGTCGTCGAAAACCAGTTTATCGTGTCACGGCAGCGGTCGGGCAGAG
TGCAAGTTCGCCTGTACTGA
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