mRNA_15462 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153790
Unique NamemRNA_15462
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|153790 vs. uniprot
Match: A0A835ZB90_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB90_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.740e-49
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 AIVNAQDQHGNTPLSMAVGLGFKEMIDMLCDAGADVFAVDANQNTLLHVSARTGATEAAQGLLDRGLRVAAKNAEGKTALDV 246
            AIVNAQDQHGNTPLSMAVGLGFKEMIDMLCDAGADVFAVDANQNTLLHVSARTGATEAAQGLLDRGLRVAAKNAEGKTALDV
Sbjct:    1 AIVNAQDQHGNTPLSMAVGLGFKEMIDMLCDAGADVFAVDANQNTLLHVSARTGATEAAQGLLDRGLRVAAKNAEGKTALDV 82
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BLAST of jgi.p|Trimin1|153790 vs. uniprot
Match: A0A2V8MS11_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8MS11_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.650e-6
Identity = 26/59 (44.07%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   70 EMIDMLCDAGADVFAVDANQNTLLHVSARTGATEAAQGLLDRGLRVAAKNAEGKTALDV 246
            E++ M+ DAGAD+ AV+  QNT LH++A+ G+ +  Q L++RG ++  KN +GKT  +V
Sbjct:  405 EVMKMIADAGADINAVNDQQNTALHLAAQRGSDKIVQYLINRGAKLDLKNKQGKTPAEV 463
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BLAST of jgi.p|Trimin1|153790 vs. uniprot
Match: A0A7G2CKQ1_9TRYP (Ankyrin repeat/Ankyrin repeats (3 copies)/Ankyrin repeats (Many copies), putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2CKQ1_9TRYP)

HSP 1 Score: 51.2 bits (121), Expect = 1.420e-5
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:    7 VNAQDQHGNTPLSMAVGLGFKEMIDMLCDAGADV-FAVDANQNTLLHVSARTGATEAAQGLLDRGLRVAAKNAEGKTALDV 246
            VNA+D+HG TPL  A+ +  KE+ + L D GA+    V  +  T LH++A  G  +  + L   G     KN EGKT  D+
Sbjct:  142 VNAEDEHGGTPLLTAIFMKAKELAEFLLDNGANPNVQVKEDGTTPLHIAADLGLNDTVRTLCYAGADRQKKNTEGKTPQDI 222
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BLAST of jgi.p|Trimin1|153790 vs. uniprot
Match: UPI001EB03E53 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB03E53)

HSP 1 Score: 49.7 bits (117), Expect = 5.350e-5
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    7 VNAQDQHGNTPLSMAVGLGFKEMIDMLCDAGADVFAVDANQNTLLHVSARTG 162
            +N +  +G+TPL +AVG G+ +++D L D GADV  VD + + LLH++   G
Sbjct: 1172 INTRGGNGHTPLMLAVGEGYTDVVDFLVDHGADVHMVDNDGDCLLHLACELG 1223
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BLAST of jgi.p|Trimin1|153790 vs. uniprot
Match: D8LIM8_ECTSI (DHHC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM8_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 9.940e-5
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 IVNAQDQHGNTPLSMAVGLGFKEMIDMLCDAGADVFAVDANQNTLLHVSARTG 162
            ++ A++    TPL  A   G   ++D L +AGAD+FAVDA+QNT+ H +AR G
Sbjct:  134 LLEARNAESETPLLRAAVGGNVAVVDALLEAGADMFAVDASQNTVFHNAARNG 186
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153790 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZB90_9STRA2.740e-49100.00Ankyrin repeat-containing domain protein (Fragment... [more]
A0A2V8MS11_9BACT1.650e-644.07Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7G2CKQ1_9TRYP1.420e-538.27Ankyrin repeat/Ankyrin repeats (3 copies)/Ankyrin ... [more]
UPI001EB03E535.350e-542.31serine/threonine-protein phosphatase 6 regulatory ... [more]
D8LIM8_ECTSI9.940e-545.28DHHC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_185contigContig_185:40389..40634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153790|gw1.185.46.1
KEGG TC9.B.37.1,9.B.37.3
BRITEko00000,ko01000,ko04131
KEGG koko:K20032
EC2.3.1.225
GOsGO:0000003,GO:0000139,GO:0001505,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0006464,GO:0006497,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007276,GO:0007283,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0015031,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0015833,GO:0016020,GO:0016079,GO:0016192,GO:0016234,GO:0016235,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0017156,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0019953,GO:0022414,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030133,GO:0030660,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0034220,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042802,GO:0042886,GO:0042953,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0044872,GO:0045055,GO:0045184,GO:0045202,GO:0046873,GO:0046903,GO:0046907,GO:0048232,GO:0048489,GO:0048518,GO:0048522,GO:0048609,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0055085,GO:0065007,GO:0065008,GO:0070201,GO:0070382,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0072511,GO:0090087,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:0098793,GO:0098805,GO:0098916,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1903830,GO:1904951
Preferred nameZDHHC13
Descriptionprotein-cysteine S-palmitoyltransferase activity
COG categoryZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
Evalue4.18e-08
Seed ortholog112098.XP_008617991.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_003330.1
TranscriptId154112
TrackFilteredModels1
ProteinId153790
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153790gene_15462Tribonema minus UTEX_B_3156 geneContig_185 40389..40634 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15462_1exon_15462_1Tribonema minus UTEX_B_3156 exonContig_185 40389..40634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15462CDS_15462Tribonema minus UTEX_B_3156 CDSContig_185 40389..40634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153790Trimin1|153790|gw1.185.46.1Tribonema minus UTEX_B_3156 polypeptideContig_185 40389..40634 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15462 ID=mRNA_15462|Name=jgi.p|Trimin1|153790|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_185:40389..40634+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCATCGTCAATGCCCAAGATCAGCATGGCAACACGCCTCTTTCCATGGC
CGTCGGCCTCGGCTTCAAGGAGATGATAGACATGCTCTGCGATGCCGGCG
CCGACGTGTTCGCCGTGGATGCAAACCAGAACACCCTGCTGCACGTCAGC
GCCAGAACCGGCGCAACTGAAGCCGCACAGGGCCTGCTGGACAGGGGGCT
CAGGGTGGCTGCCAAGAATGCGGAGGGGAAAACGGCGCTGGACGTG
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protein sequence of jgi.p|Trimin1|153790

>Trimin1|153790|gw1.185.46.1 ID=Trimin1|153790|gw1.185.46.1|Name=jgi.p|Trimin1|153790|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
AIVNAQDQHGNTPLSMAVGLGFKEMIDMLCDAGADVFAVDANQNTLLHVS
ARTGATEAAQGLLDRGLRVAAKNAEGKTALDV
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mRNA from alignment at Contig_185:40389..40634+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15462 ID=mRNA_15462|Name=jgi.p|Trimin1|153790|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_185:40389..40634+ (Tribonema minus UTEX_B_3156 )
GCCATCGTCAATGCCCAAGATCAGCATGGCAACACGCCTCTTTCCATGGC
CGTCGGCCTCGGCTTCAAGGAGATGATAGACATGCTCTGCGATGCCGGCG
CCGACGTGTTCGCCGTGGATGCAAACCAGAACACCCTGCTGCACGTCAGC
GCCAGAACCGGCGCAACTGAAGCCGCACAGGGCCTGCTGGACAGGGGGCT
CAGGGTGGCTGCCAAGAATGCGGAGGGGAAAACGGCGCTGGACGTG
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Coding sequence (CDS) from alignment at Contig_185:40389..40634+

>mRNA_15462 ID=mRNA_15462|Name=jgi.p|Trimin1|153790|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_185:40389..40634+ (Tribonema minus UTEX_B_3156 )
GCCATCGTCAATGCCCAAGATCAGCATGGCAACACGCCTCTTTCCATGGC
CGTCGGCCTCGGCTTCAAGGAGATGATAGACATGCTCTGCGATGCCGGCG
CCGACGTGTTCGCCGTGGATGCAAACCAGAACACCCTGCTGCACGTCAGC
GCCAGAACCGGCGCAACTGAAGCCGCACAGGGCCTGCTGGACAGGGGGCT
CAGGGTGGCTGCCAAGAATGCGGAGGGGAAAACGGCGCTGGACGTG
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