mRNA_15224 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177055
Unique NamemRNA_15224
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: A0A835ZBZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ5_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.580e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGCTLTVKHGLMYAVT 267
            MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGCTLTVKHGLMYAVT
Sbjct:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGCTLTVKHGLMYAVT 89
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: D7G4U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.010e-21
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGCTLT 237
            +RRGR E AVRCA ELA+KS++D +RR+ +I +EDS+LHPA PLLTWLM A  KGY PP   + A L VVHE + C +T
Sbjct:   58 IRRGRAEAAVRCALELALKSWSDAIRRVLVIIVEDSLLHPAAPLLTWLMVATSKGYRPPLRLLEAFLCVVHETAACPVT 136
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: A0A6H5JW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.030e-20
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 228
            +RRGR E AVRCA ELA+KS++D +RR+ +I +EDS+LHPA PLLTWLM A  KGY PP   + A L VVHE + C
Sbjct:  347 IRRGRAEAAVRCALELALKSWSDAIRRVLVITVEDSLLHPAAPLLTWLMVATSKGYRPPPRLLEAFLCVVHETAAC 422
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: A0A7S2V1T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.370e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   13 RGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 228
            RGE AVR A EL  KS+ D +RR+ II +ED +LHPA PLL WL+ A  +G+IP    V ACL +VHE++ C
Sbjct:    9 RGESAVRVALELMAKSWTDFIRRIVIIMIEDCMLHPATPLLVWLLLADSRGWIPTSAQVQACLKIVHELTLC 80
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: A0A2J8ACY4_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ACY4_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 1.240e-14
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGCTLTVKHGL 252
            +R GRG  A R A  LA +  A L+RRL IIC+EDS+LHP LPL+ WLMAA GKGYI     V+A L + ++++  T+ V+ GL
Sbjct:  333 VRLGRGGCAARAALHLAKEDPAQLLRRLSIICVEDSILHPGLPLVVWLMAAQGKGYIMGAAHVSALLCLTYQLA--TVGVRDGL 414
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: A0A7R9U3T9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3T9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.230e-13
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVS 222
            +RR +   A+R A  LA   F  LVRRL +I  ED+VLHPALPLL WLM A  KGY+P    + A LA+VHEV+
Sbjct:  174 VRRRKSVPALRLAMGLAFIDFEALVRRLCVIMAEDAVLHPALPLLVWLMMACSKGYVPVFADLYAILAIVHEVA 247
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: A0A6U3V913_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3V913_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.630e-13
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   25 AVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 228
            AVR A ELA KS+ DL+RRL II LEDS LHP   LL WLM A  KGY+P +  +   L +V E++ C
Sbjct:  295 AVRVAMELADKSWTDLIRRLPIIILEDSTLHPDFSLLAWLMIADSKGYVPSKELIVRVLQIVFEMASC 362
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: A0A7S3VG54_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VG54_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.310e-12
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 228
            +RR R   +VR A EL+ KSF DL+RRL IICLEDS LH   P   WLM A  K ++PP+  +   +  V E++ C
Sbjct:  275 VRRRRPLPSVRSAMELSDKSFGDLIRRLPIICLEDSFLHHDFPFFIWLMVAYSKDFVPPQELIVRIMRAVFEIASC 350
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BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: A0A0D2N4J6_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N4J6_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 2.440e-12
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    1 MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGC 228
            +R GR E AVR AA L  +   +L+RRL +ICLED +LHP LPL+ W MAA  KGY+         LAVV +++ C
Sbjct:  340 VRLGRHEQAVRVAAALLKEDAGELLRRLAVICLEDGLLHPQLPLVCWCMAAVSKGYLVGGTLANELLAVVQQLAAC 415
[Close]
BLAST of jgi.p|Trimin1|177055 vs. uniprot
Match: K0RE75_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE75_THAOC)

HSP 1 Score: 70.9 bits (172), Expect = 2.440e-12
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    4 RRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMAAAGKGYIPPEPAVAACLAVVHEVSGCTL 234
            RR  GE AVR A EL  +++   +RRL II LEDS LHP   LL WLM A  KGY+P    +   L +V+EV+ C L
Sbjct:  287 RRRSGEQAVRVAMELIDRAYDQFIRRLPIIILEDSTLHPDFGLLVWLMIAESKGYVPSRQILNRLLEIVYEVASCPL 363
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177055 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBZ5_9STRA1.580e-56100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G4U0_ECTSI3.010e-2159.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW62_9PHAE1.030e-2060.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V1T4_9STRA2.370e-1754.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2J8ACY4_9CHLO1.240e-1451.19Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A0A7R9U3T9_9STRA9.230e-1354.05Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A6U3V913_9STRA9.630e-1354.41Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3VG54_9STRA1.310e-1247.37Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0D2N4J6_9CHLO2.440e-1248.68Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
K0RE75_THAOC2.440e-1249.35Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_145contigContig_145:308651..308920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177055|e_gw1.145.6.1
Max annot lvl2759|Eukaryota
EggNOG OGs2DBB4@1|root,2S5HM@2759|Eukaryota
Evalue4.94e-22
Seed ortholog2880.D7G4U0
Hectar predicted targeting categoryother localisation
TranscriptId177377
TrackFilteredModels1
ProteinId177055
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177055gene_15224Tribonema minus UTEX_B_3156 geneContig_145 308651..308920 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15224_1exon_15224_1Tribonema minus UTEX_B_3156 exonContig_145 308651..308920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15224CDS_15224Tribonema minus UTEX_B_3156 CDSContig_145 308651..308920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177055Trimin1|177055|e_gw1.145.6.1Tribonema minus UTEX_B_3156 polypeptideContig_145 308651..308920 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15224 ID=mRNA_15224|Name=jgi.p|Trimin1|177055|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_145:308651..308920+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGTGGCCGCGGAGAGGGAGCTGTGCGCTGCGCAGCAGAGCTCGC
CATGAAGAGCTTTGCTGACTTGGTGCGCCGCTTGGGCATCATATGCCTGG
AGGACTCTGTGCTGCACCCAGCACTGCCATTGCTCACATGGCTCATGGCG
GCAGCGGGCAAGGGGTACATACCTCCAGAACCTGCTGTGGCTGCCTGCCT
GGCTGTGGTGCACGAGGTGAGCGGTTGTACGCTCACTGTTAAGCATGGCC
TTATGTATGCAGTCACTTAG
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protein sequence of jgi.p|Trimin1|177055

>Trimin1|177055|e_gw1.145.6.1 ID=Trimin1|177055|e_gw1.145.6.1|Name=jgi.p|Trimin1|177055|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
MRRGRGEGAVRCAAELAMKSFADLVRRLGIICLEDSVLHPALPLLTWLMA
AAGKGYIPPEPAVAACLAVVHEVSGCTLTVKHGLMYAVT*
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mRNA from alignment at Contig_145:308651..308920+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15224 ID=mRNA_15224|Name=jgi.p|Trimin1|177055|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_145:308651..308920+ (Tribonema minus UTEX_B_3156 )
ATGAGGCGTGGCCGCGGAGAGGGAGCTGTGCGCTGCGCAGCAGAGCTCGC
CATGAAGAGCTTTGCTGACTTGGTGCGCCGCTTGGGCATCATATGCCTGG
AGGACTCTGTGCTGCACCCAGCACTGCCATTGCTCACATGGCTCATGGCG
GCAGCGGGCAAGGGGTACATACCTCCAGAACCTGCTGTGGCTGCCTGCCT
GGCTGTGGTGCACGAGGTGAGCGGTTGTACGCTCACTGTTAAGCATGGCC
TTATGTATGCAGTCACTTAG
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Coding sequence (CDS) from alignment at Contig_145:308651..308920+

>mRNA_15224 ID=mRNA_15224|Name=jgi.p|Trimin1|177055|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_145:308651..308920+ (Tribonema minus UTEX_B_3156 )
ATGAGGCGTGGCCGCGGAGAGGGAGCTGTGCGCTGCGCAGCAGAGCTCGC
CATGAAGAGCTTTGCTGACTTGGTGCGCCGCTTGGGCATCATATGCCTGG
AGGACTCTGTGCTGCACCCAGCACTGCCATTGCTCACATGGCTCATGGCG
GCAGCGGGCAAGGGGTACATACCTCCAGAACCTGCTGTGGCTGCCTGCCT
GGCTGTGGTGCACGAGGTGAGCGGTTGTACGCTCACTGTTAAGCATGGCC
TTATGTATGCAGTCACTTAG
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