mRNA_15207 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177072
Unique NamemRNA_15207
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: A0A836CL56_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL56_9STRA)

HSP 1 Score: 220 bits (561), Expect = 7.290e-73
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MPVTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 324
            MPVTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS
Sbjct:    1 MPVTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 108
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: D7FTI7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI7_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.010e-57
Identity = 84/106 (79.25%), Postives = 97/106 (91.51%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 324
            V+VEI  AGDG+NYP+KGQ VTVHYT YL+DGTQFDSSR RGKPFKFKLGSEQVVPGLD+G +QLSIGERAK+T+P + AYGA+GFPGLVPP+S LVFD+ELITF+
Sbjct:    6 VSVEIFAAGDGINYPQKGQTVTVHYTGYLEDGTQFDSSRNRGKPFKFKLGSEQVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 111
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: A0A7S2C1G0_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1G0_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.800e-53
Identity = 79/106 (74.53%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 324
            V VEI  AGDG+NYPRKGQ VTVHYT YL DG  FDSSR+RGKPFKFKLG+EQV+ GLD+G +QLSIGERAKI++P ++AYG +GFPGLVPP+S LVFD+ELITF+
Sbjct:    6 VAVEIFAAGDGINYPRKGQTVTVHYTGYLPDGDTFDSSRDRGKPFKFKLGAEQVILGLDQGVSQLSIGERAKISIPAALAYGERGFPGLVPPDSELVFDLELITFN 111
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: F0YHE6_AURAN (Peptidylprolyl isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE6_AURAN)

HSP 1 Score: 171 bits (432), Expect = 3.920e-53
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 324
            + VEI  AGDGVNYPRKGQ VTVHY+ YL  G  FDSSR+RGKPFKFKLG EQV+PGLD G +QLSIGERAKI +PP MAYG +GFPGL+P NS L+FD+ELITF+
Sbjct:    7 IAVEIFAAGDGVNYPRKGQTVTVHYSGYLPSGDMFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKIVIPPDMAYGDRGFPGLIPRNSALIFDLELITFN 112
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: A0A6U1QP22_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QP22_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.740e-53
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 324
            V VEI  AGDG+NYP+ G+ VTVHYT +L DGTQFDSSR+RGKPFKFKLG+EQV+ GLDEG +QLSIGERAKIT+P    YG +GFPGLVPPNS LVFD+ELITF+
Sbjct:    8 VKVEIFAAGDGINYPQPGKTVTVHYTGFLPDGTQFDSSRDRGKPFKFKLGAEQVISGLDEGVSQLSIGERAKITIPSQKGYGERGFPGLVPPNSQLVFDLELITFT 113
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: A0A8J2T2V8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2V8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.700e-52
Identity = 78/106 (73.58%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 324
            + VEI  AGDGVNYPR+GQ VTVHY+ YL +G  FDSSR+RGKPFKFKLG EQV+PGLD G +QLSIGERAKI++P  MAYG +GFPGL+P NS LVFD+ELITFS
Sbjct:    8 IAVEIFAAGDGVNYPRQGQTVTVHYSGYLPNGEIFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKISIPSDMAYGERGFPGLIPRNSALVFDLELITFS 113
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: A0A485LR83_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR83_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.280e-51
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITF 321
            V VE+ VAGDGVNYP+KGQ V VHYTAYL DG +FDSSR+R KPFKFKLG+EQV+PGLDEG  QL + ERAKI +P   AYG KGFPGLVPPN+ LVFD+ELITF
Sbjct:   21 VQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIEQLCMKERAKIYIPADKAYGKKGFPGLVPPNTNLVFDIELITF 125
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: A0A024TRW9_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRW9_9STRA)

HSP 1 Score: 162 bits (411), Expect = 9.650e-50
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITF 321
            + VE+ VAGDG+NYP+KGQ V VHYTAYL DG +FDSSR+R KPFKFKLG+EQV+PGLDEG  +L + ERAKI +P   AYG KGFPGLVPPN+ LVFD+ELITF
Sbjct:   21 IQVEVFVAGDGINYPQKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKIYIPSDKAYGKKGFPGLVPPNTNLVFDIELITF 125
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: K3WSB6_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB6_GLOUD)

HSP 1 Score: 161 bits (408), Expect = 2.360e-49
Identity = 72/105 (68.57%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITF 321
            + VE+ +AGDG+NYP+KGQ V VHYT YL DG +FDSSR+R KPFKFKLG+EQV+PGLDEG  +L + ERAKI +P   AYG KGFPGLVPPNS L+FD+EL+TF
Sbjct:   16 IQVEVFIAGDGINYPKKGQTVVVHYTGYLQDGRKFDSSRDREKPFKFKLGAEQVIPGLDEGVERLCMKERAKIFIPADKAYGRKGFPGLVPPNSNLIFDLELLTF 120
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BLAST of jgi.p|Trimin1|177072 vs. uniprot
Match: A0A3R7ACY2_9STRA (Peptidylprolyl isomerase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ACY2_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.270e-49
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    7 VTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFKLGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITF 321
            + VE+ VAGDGVNYP+KGQ V VHYTAYL DG +FDSSR+R KPFKFKLG+EQV+PGLDEG  +L + ERAK+ +P   AYG KGFPGLVPPN+ LVFD+ELITF
Sbjct:   80 IQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKVYIPSDKAYGKKGFPGLVPPNTNLVFDIELITF 184
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177072 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL56_9STRA7.290e-73100.00Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
D7FTI7_ECTSI1.010e-5779.25Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2C1G0_9STRA3.800e-5374.53Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
F0YHE6_AURAN3.920e-5373.58Peptidylprolyl isomerase n=1 Tax=Aureococcus anoph... [more]
A0A6U1QP22_9STRA5.740e-5374.53Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
A0A8J2T2V8_9STRA6.700e-5273.58Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A485LR83_9STRA8.280e-5174.29Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
A0A024TRW9_9STRA9.650e-5071.43Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
K3WSB6_GLOUD2.360e-4968.57Peptidylprolyl isomerase n=1 Tax=Globisporangium u... [more]
A0A3R7ACY2_9STRA4.270e-4971.43Peptidylprolyl isomerase n=3 Tax=Aphanomyces astac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_145contigContig_145:173000..174472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177072|e_gw1.145.31.1
KEGG TC9.A.58.1
BRITEko00000,ko01000,ko02000,ko03110
KEGG koko:K09568,ko:K15382
EC5.2.1.8
DescriptionPeptidyl-prolyl cis-trans isomerase
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0545@1|root,KOG0544@2759|Eukaryota
Evalue1.66e-58
Seed ortholog2880.D7FTI7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-21_001540.1
TranscriptId177394
TrackFilteredModels1
ProteinId177072
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177072gene_15207Tribonema minus UTEX_B_3156 geneContig_145 173000..174472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177072Trimin1|177072|e_gw1.145.31.1Tribonema minus UTEX_B_3156 polypeptideContig_145 173000..174472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15207_2exon_15207_2Tribonema minus UTEX_B_3156 exonContig_145 173000..173197 -
exon_15207_1exon_15207_1Tribonema minus UTEX_B_3156 exonContig_145 174344..174472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15207CDS_15207Tribonema minus UTEX_B_3156 CDSContig_145 174344..174472 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15207 ID=mRNA_15207|Name=jgi.p|Trimin1|177072|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=327bp|location=Sequence derived from alignment at Contig_145:173000..174472- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTGACGGTGGAGATCCTGGTGGCAGGCGATGGCGTCAACTACCC
TCGCAAAGGGCAGATGGTGACCGTGCACTACACGGCCTACTTGGACGACG
GCACTCAATTCGACTCCAGCAGGGAGAGGGGCAAGCCATTCAAGTTCAAG
TTGGGCAGCGAGCAGGTGGTACCGGGGTTGGACGAGGGCGCAGCACAGCT
CAGCATCGGCGAGAGGGCCAAGATTACCATGCCGCCGAGCATGGCGTATG
GCGCCAAGGGCTTCCCGGGCCTCGTCCCGCCCAACAGCACGCTCGTGTTC
GACATGGAGCTCATCACCTTCTCGTGA
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protein sequence of jgi.p|Trimin1|177072

>Trimin1|177072|e_gw1.145.31.1 ID=Trimin1|177072|e_gw1.145.31.1|Name=jgi.p|Trimin1|177072|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=109bp
MPVTVEILVAGDGVNYPRKGQMVTVHYTAYLDDGTQFDSSRERGKPFKFK
LGSEQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVF
DMELITFS*
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mRNA from alignment at Contig_145:173000..174472-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15207 ID=mRNA_15207|Name=jgi.p|Trimin1|177072|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1473bp|location=Sequence derived from alignment at Contig_145:173000..174472- (Tribonema minus UTEX_B_3156 )
ATGCCCGTGACGGTGGAGATCCTGGTGGCAGGCGATGGCGTCAACTACCC
TCGCAAAGGGCAGATGGTGACCGTGCACTACACGGCCTACTTGGACGACG
GCACTCAATTCGACTCCAGCAGGGAGAGGGTGAGTTTCGTCAAAAGGGGG
GGAAGCGTAGTTTGCAATGGGGAGGCTGCCTATCAAGCAAGCAGCACTTC
ATATAATGGTGTATTCATTCATTTCAAAGCAGCCTCACTTTCGAAGCAGT
CTCATTTCAAAGCAGCCAATGGTTCACTTCCGTCATCTGATAATATGCCC
GATGGGGAGCCTTGAAAGGCGAGTTGAGCAGTGTGTGTGTGAAAGTCTTG
TCAGAAATCTATGCAGGTCCTCGCAAGCTGAAAGCAAGAAAAACATAGCT
GAAATGCTGAGCTGCTAGCAGATCAGATCAGATTTGCTCCTCATGTTCTC
ATGTTCTGAACTTACCTCAAGCAGATCGCATTGCTGGTGAGCCACTTGTG
CCCTGGGGCTGTTTGTACACCACGTCCCAACAAACGCCGTTGAGCAGTCC
CCAATGAGCTGCCACTGCTGACTTCAACTCTACACTTGCAATAGCAGCAG
CATCAAGAATGTCGTCAGGCACACATCATTGATGTTGAGCATTGAGCGCA
GCCATTCAGAAGGTATGTCCTGGGCATGCAACGGCCTGTGTTCGCCAGCA
GTTGTTGGCGCGCAATTACGATGATGCACAGTTGCGCGGGTGTTGCGGGG
CTGCACTGGAAGGCCGGCCGGGCAAATGCGTCATGGACTTCAGCCTGATG
GCAGCAGCGTCGTGCAGCAGTGTATGGAGTGAAGCAGATGTGCGGTTGCT
ACCGTCAGCGCACGCGCGCCTACTGCGTGCGGGCAAAGCAAACATATCAG
CATGATATACTACTAAGGCAGTACATGTCACGGTCTGCACTCGCGGTCTG
CAATGGCACTGAAGCAGCTTCCGCATTTCGAGATGAGGTTGACGAAACAG
CATGCATGCCAAGACCTTCCCATGATCGCGCTGTCCCCAGATGGCAGCAG
CCATCGAAAGTGACACATGGTCAGTGAGGGGGTGGTGCCTCGTGTTAGAG
ACTTCAACTGCACGTCAGCAACCGCAACACAACCTGCAGCAGTCTGCACG
CCCGTGTCGTCACTCGTCCACCCTCTCATCACCAAGGCATCTGACTGCCC
AAATGCCCCCAATCCCCTCCTAGAGATGAGCTGCAAACAACAGCTGCGCG
CCACCGCCTCCCTGCCCACGTGCAGGGCAAGCCATTCAAGTTCAAGTTGG
GCAGCGAGCAGGTGGTACCGGGGTTGGACGAGGGCGCAGCACAGCTCAGC
ATCGGCGAGAGGGCCAAGATTACCATGCCGCCGAGCATGGCGTATGGCGC
CAAGGGCTTCCCGGGCCTCGTCCCGCCCAACAGCACGCTCGTGTTCGACA
TGGAGCTCATCACCTTCTCGTGA
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Coding sequence (CDS) from alignment at Contig_145:173000..174472-

>mRNA_15207 ID=mRNA_15207|Name=jgi.p|Trimin1|177072|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=327bp|location=Sequence derived from alignment at Contig_145:173000..174472- (Tribonema minus UTEX_B_3156 )
ATGCCCGTGACGGTGGAGATCCTGGTGGCAGGCGATGGCGTCAACTACCC
TCGCAAAGGGCAGATGGTGACCGTGCACTACACGGCCTACTTGGACGACG
GCACTCAATTCGACTCCAGCAGGGAGAGGGGCAAGCCATTCAAGTTCAAG
TTGGGCAGCGAGCAGGTGGTACCGGGGTTGGACGAGGGCGCAGCACAGCT
CAGCATCGGCGAGAGGGCCAAGATTACCATGCCGCCGAGCATGGCGTATG
GCGCCAAGGGCTTCCCGGGCCTCGTCCCGCCCAACAGCACGCTCGTGTTC
GACATGGAGCTCATCACCTTCTCGTGA
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