mRNA_15194 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: A0A836CJX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX0_9STRA) HSP 1 Score: 828 bits (2139), Expect = 1.740e-302 Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 1
Query: 1 MGQRRQRRQLRLCARLLLLSALPLTVFVVRTAARGLLGGSRDPQPSGVVDFPAVEGREWRAKDVYVTGEGTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQLKASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSKHNXXXXXXXXXXXXXKTMKRDKADFALGADADLKEKQLTDAIRRXXXXXXXMRDAVETSTITGSYEELLAMQRWTKDGGLKPPVQ 1308
MGQRRQRRQLRLCARLLLLSALPLTVFVVRTAARGLLGGSRDPQPSGVVDFPAVEGREWRAKDVYVTGEGTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQLKASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSKHNXXXXXXXXXXXXXKTMKRDKADFALGADADLKEKQLTDAIRRXXXXXXXMRDAVETSTITGSYEELLAMQRWTKDGGLKPPVQ
Sbjct: 1 MGQRRQRRQLRLCARLLLLSALPLTVFVVRTAARGLLGGSRDPQPSGVVDFPAVEGREWRAKDVYVTGEGTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQLKASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSKHNXXXXXXXXXXXXXKTMKRDKADFALGADADLKEKQLTDAIRRXXXXXXXMRDAVETSTITGSYEELLAMQRWTKDGGLKPPVQ 436
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: A0A835YUK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK0_9STRA) HSP 1 Score: 227 bits (578), Expect = 1.770e-65 Identity = 151/483 (31.26%), Postives = 203/483 (42.03%), Query Frame = 1
Query: 142 VVDFPAVEGREWRAKDVYVTGEGTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQ-----RNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQL------------------------------------------------------------------------------------------------KASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSKHNXXXXXXXXXXXXXKTMKRDKADFALGADADLKEKQLTDAIRRXXXXXXXMRDAVETSTITGSYEELLAMQRWTKDG 1287
VVD P VEG+EWR V + +SFC +N +Y EPWK PMD L S CR ++ +R +++ +L H + R ++ P+GFI HETRCGSTL+ANMIAH+PTALMVSESL+PY + + + + R ++ + R+LC T H CF K P LS FP TPW+FLFR+P +++ S + G W K ++ Y + G +++ A PCL + G E RC GL +CR+A+AA R+ P L +DY LP+ V ++LW HF Q A D PY+ EA R YSK N K RD F DA KE QLT A+ S + Y EL+AMQRW G
Sbjct: 28 VVDLPPVEGKEWRPFQVDFSDNQISLSFCLLNYDEYSDEPWKYPMDGALQKVSRCREQS-SRTFTVDELREHMEGRGGGRGGGEFIEPTGFIQHETRCGSTLMANMIAHVPTALMVSESLLPYNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQSSWGRRMTRQERADVIQTVVRSLCHTSHGRSACFIKFPSAFYLSDLLTAFPTTPWIFLFRQPSEILASQLGGQWSKHDVFYEKRDDGTVVQVAEPPR-KPCLMWAIDYGGAVST--EERCVRGLSVLCREALAALRSSP-AGLAVDYATLPDVVADHLWTEHFGQSAAALAHDAPYLSEASRVYSKAN-------------KQPARDPLAFDAQGDAAFKESQLTPEALA----------ALRASDMYTQYNELVAMQRWPACG 482
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: D7G7Z3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z3_ECTSI) HSP 1 Score: 151 bits (382), Expect = 2.410e-37 Identity = 105/364 (28.85%), Postives = 163/364 (44.78%), Query Frame = 1
Query: 217 VSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTH-TRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQLKASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEM---RCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLP----YMEEAGRAYSKHNXXXXXXXXXXXXXKTMKRDKADFALGADADLKEKQLTDAIRRXXXXXXXMRDAVETSTITGSYEELLAMQRWTKD 1284
V++C +++ Y PW M S C TR Y L+ L + NP+ ++ P+GFI+HETRCGSTL ANMIA +P+ ++ + LR VR +FR + Q H FFK L ++ +P+T W++LFR+PL+V+ SN++GAW K+ +A + A PC+R G + +PE CA L+ + A+ L ++Y+ LPE +TEY++P H G A TE + +ME YSK ++ G D +LKE+ +R +T+ +Y L+ +QRW K+
Sbjct: 140 VAYCQLDMVAYHESPWLFAMGAFHQRTSGCMDDPSLTRTYRLSSLKRVLEENPDEFMDPTGFIYHETRCGSTLSANMIAAVPSNIVH------------RCPDGLREELVRTVFRLMGPVQDGHTDLFFKFQSSKFLPAIEQAWPETKWIYLFRDPLEVMSSNLKGAWRKQVA----SAERNMTSPAVYNLGGPCVRGAKGGGSRKAPSPESLVTTCAKHLETLNEIALTQIVEGSPNGLAVEYRQLPEVMTEYVYPKHL--GMAETEEERSEFKRWMEPVTHVYSKGMATPAEGAV-----------SKEYQQGMDLELKEQGSDPRMR------------AAAATMCANYRSLVELQRWRKE 462
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: A0A6H5K3E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E4_9PHAE) HSP 1 Score: 149 bits (375), Expect = 7.680e-37 Identity = 70/176 (39.77%), Postives = 112/176 (63.64%), Query Frame = 1
Query: 217 VSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQL--KASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLY 738
++FC M +A+YQ PWK PM ML S C + R + L+DL + + +PE +L P+GF++HETR GSTLVANM+AH+P+ L+VSE+ + ++ + +V+ +R + L ++ H+ FFK T L + +P+ WV+LFR+P++V+VSN++GA+GK+E Y
Sbjct: 177 ITFCLMRMAEYQETPWKYPMAVMLQKKSECSKAENLRSFRLSDLRTYMREHPEEFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSENNMAEDPVRRCSDCTEMQKVALLREIMTLLGNGRNGHEHLFFKFQDSTTLPLMMKAYPEVGWVYLFRDPVEVMVSNLKGAYGKRERFY 352
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: A0A7S2SP01_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP01_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.100e-31 Identity = 93/263 (35.36%), Postives = 135/263 (51.33%), Query Frame = 1
Query: 202 GEGTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQLKASGELRVSEVRALFRALCFTQHHHDRCFFKLPG--GTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHF 984
G V+ C +N Y EP PM + L ASNCR + R L+ L + +P+ L P+GF+ HETRCGSTLVA+M+A P L+ SES P + A+G R S +R + +C H+H RCFFK + FQ+ FP+ PW F+FREP+ V++S+ +G L S+++ KA L + V+ +D CA L + + A+AA R ++L Y++LP+AV L P HF
Sbjct: 130 GNDPSVTLCKLNYDKYWREPSSLPMFKHLVGASNCRGSNY-RTERLSTLKKEMEADPDGTLQPTGFVFHETRCGSTLVADMLASHPHHLVFSESSPPAS---VAATG--RASVLRDVMLLMC-RSHYHTRCFFKFQSINTPRIGVFQQAFPEVPWAFVFREPVQVMMSHFKGGTSGAVCLRSKSSP--------TKAHLAILGVSSGRRVSNEDF----CAAHLAYLSQSALAAFE-RSSNGMMLSYEDLPDAVISKLLPQHF 372
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: D7G7C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C8_ECTSI) HSP 1 Score: 135 bits (339), Expect = 4.170e-31 Identity = 65/166 (39.16%), Postives = 103/166 (62.05%), Query Frame = 1
Query: 217 VSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQL--KASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMR 708
++FC M +A+YQ PWK PM ML S C + R + L+DL + + +PE +L P+GF++HETR GSTLVANM+AH+P+ L+VSES + ++ + +V+ +R + L ++ H FFK T L + +P+ WV+LFR+P++V+VSN++
Sbjct: 53 ITFCLMRMAEYQETPWKYPMAVMLQKKSGCSKAENLRSFHLSDLRTYMREHPEEFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSESNMAEDPVRRCSHCTEMQKVTLLREIMTLLGNGRNGHKHLFFKFQDSTTLPLMMKAYPEVGWVYLFRDPVEVMVSNLK 218
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: A0A7S2GE74_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE74_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.330e-27 Identity = 99/314 (31.53%), Postives = 149/314 (47.45%), Query Frame = 1
Query: 130 QPSGVVDFPAVEGR----EWRAKDVYVTGEGTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQLKASGELRVSEVRALFRALCFTQHHHDRCFFKLPG--GTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSK 1053
Q VV+ P V W D+ + T V+ C ++ Y P K PM + L AS CR + + ++ L+ L A + +P+ L P+GF+ HE+RCGSTLVA+M+ L SES P + GE V +R + +C + +H RCFFK + F FP+TPW F+FREP+ V++S+ +G G L + EK +K I+ G T + E CA L + A +A + + L+L+Y++LPE + + HFR P +E M E + YSK
Sbjct: 89 QVPAVVNIPPVPKSGVPSHWTPIDINFARDPT-VTLCKLDYDTYWRNPDKLPMFRDLVAASKCRGK-NVKEEKLSVLKAEMEADPDGTLQPTGFVFHESRCGSTLVADMLGSQAHHLTFSESSPPAA---IAGKGERHVGILRTVMLLMCRSSYH-TRCFFKFQSVNAPRIRIFAAAFPETPWAFVFREPVQVMMSHFKGGTGGAVCLRARNRP----EKGHRKIISEL-------GETDHLSAEEFCAVHLAYLSECAYSAYTSTAN-GLLLNYEDLPEILPMKVLKDHFR-APVDSEGQAR-MLEVSKMYSK 382
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: A0A6H5KRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY1_9PHAE) HSP 1 Score: 123 bits (308), Expect = 7.770e-27 Identity = 88/285 (30.88%), Postives = 136/285 (47.72%), Query Frame = 1
Query: 217 VSFCNMNIADYQSEPWKTPMDQMLAVASNCRS--RTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQL--KASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAW--GKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSK 1053
V C +N Y + PW PM +L++AS C R + ++ L + + P+GFI HETRCGSTLVANM+A + T +M SES P+K + K E V +R + A+ + H +FK + +PDTPW+F+FREP++V++S + GA G + + AA + K SK P L P E A L +C+ A+ A P ++++Y +LP + + P H+ + ER+ M + + YSK
Sbjct: 215 VKMCQVNYDSYSAAPWLLPMGGLLSIASGCADLKRDTVQIVHMSTLKRLLEESTVPIPPPTGFIFHETRCGSTLVANMLASVETNVMWSESTGPWKVMHTCPKCHKEQIVPWLRVIMDAMTRSARH-KHFYFKFQSSEDIDAVTSAYPDTPWIFIFREPIEVMMSRL-GAQRIGMEGMEKEVAARVERGMKPSKILSKPKLGKP---------PKETSAAQLLAGLCKKAIHAFEENPGKGMMVEYPHLPHGIVSTVLPDHYGVTVSEAERER--MMTSTQMYSK 486
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5) HSP 1 Score: 119 bits (297), Expect = 4.500e-25 Identity = 95/294 (32.31%), Postives = 140/294 (47.62%), Query Frame = 1
Query: 202 GEGTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYK-ALQLKASGELRVSEVRALFRALCFTQHHHDRCFFKLPG--GTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRM-----PLPDGVTRDDAP--EMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSK 1053
G T V C +NI Y +EP+K PM + L SNC+ T T +L DL + PE L P+GF+ HE+R GSTL+AN++A P L+ SES P AL A + +R L RA+ H R FFK + + E FP+ PW+F++R+P++V+ S+ + +K A PCLR PL R P E CA L +C A+ A + P+ + ++Y +LP+ + ++PVHF P + + M + YSK
Sbjct: 79 GMKTKVELCRLNIEAYTAEPYKYPMFKDLLRVSNCKGNTMT--VTLNDL---RFGIPET-LDPAGFVFHESRVGSTLIANILAADPDNLVFSESAPPPAIALHCPAPLPEKAEMMRVLLRAMS-NSVRHKRLFFKFQSVNANAIPLYTEAFPEVPWMFVYRDPVEVMASHFK-------------------QKVPAGAKVPCLRAKNSPTPLHRRYIRSKNPSDEEFCAAHLATLCDSALHALDSSPN-GIAVNYHDLPDVLYTRVFPVHFGYTPTPSVKRN--MVNVAQEYSK 343
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Match: A0A7S3ZKE9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKE9_9STRA) HSP 1 Score: 117 bits (292), Expect = 4.800e-25 Identity = 87/285 (30.53%), Postives = 133/285 (46.67%), Query Frame = 1
Query: 217 VSFCNMNIADYQSEPWKTPMDQMLAVASNC-RSRTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQ-LKASGELRVSEVRALFRALCFTQ--HHHDRCFFKLPGGTM--LSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIAPCLRMPLPDGVTRDDAPEMRCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERDLPYMEEAGRAYSK 1053
VS C + Y +P KTPM + LA AS C R R T L L ++ + + PSGF+ HE+R GSTLVANM+A +PT ++ SES P L ++ + R +++ AL ++H FFK T+ + + FP+TPW+F++R+P+ ++S+ + G L + K K A +PE CA L + A+ A D L++DY ++P A+ Y++P HF G + D A YSK
Sbjct: 124 VSLCKLAFDTYWRDPSKTPMFRDLASASRCGRGRAGT----LNTLYEDMRKKNIKPVKPSGFVFHESRVGSTLVANMLAAVPTNIVYSESAPPPAVLNHCRSCSKQRKTDILQKLIALMGASPTNYHTHLFFKFQSATVPNIRSLLDAFPETPWLFVYRDPVQTMMSHFKNGVGNGPCLRQRRSPPPATIKILKAESA---------AKASRTSPENYCAAHLAMLTSSALDA-DGSSDRGLLVDYASMPGALEAYVFPKHF--GLSLAPEDALRTHAASSVYSK 392 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353114 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15194 ID=mRNA_15194|Name=jgi.p|Trimin1|353114|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1311bp|location=Sequence derived from alignment at Contig_145:62452..73572+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGGCAGCGACGCCAGCGGCGGCAGCTGCGACTCTGCGCCAGATTGTTback to top protein sequence of jgi.p|Trimin1|353114 >Trimin1|353114|estExt_Genemark1.C_Ctg_1450011 ID=Trimin1|353114|estExt_Genemark1.C_Ctg_1450011|Name=jgi.p|Trimin1|353114|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=437bp MGQRRQRRQLRLCARLLLLSALPLTVFVVRTAARGLLGGSRDPQPSGVVDback to top mRNA from alignment at Contig_145:62452..73572+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15194 ID=mRNA_15194|Name=jgi.p|Trimin1|353114|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=11121bp|location=Sequence derived from alignment at Contig_145:62452..73572+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_145:62452..73572+ >mRNA_15194 ID=mRNA_15194|Name=jgi.p|Trimin1|353114|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1311bp|location=Sequence derived from alignment at Contig_145:62452..73572+ (Tribonema minus UTEX_B_3156 )back to top |