mRNA_15177 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177392
Unique NamemRNA_15177
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A835Z872_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z872_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 1.600e-140
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1
Query:    1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSLQFPQWTAASRSAV 609
            MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSLQFPQWTAASRSAV
Sbjct:    1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSLQFPQWTAASRSAV 203          
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A835YZ35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ35_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.850e-45
Identity = 93/188 (49.47%), Postives = 109/188 (57.98%), Query Frame = 1
Query:    7 DPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSL 570
            DPGPDA KV DLCAG+GGFSRAVQ+AGGRVVYAMD NA+ KP+YDANRG GAEL+  DLY  + W  L +SGAG+ V G PC + +SAR V A+KG                                                  YH+ FLR+ ASD GPPY++ RL  V ARGG  VRDALAQM+L
Sbjct:  440 DPGPDAPKVADLCAGLGGFSRAVQLAGGRVVYAMDNNASVKPLYDANRGAGAELTISDLYLPDTWTALVSSGAGVAVAGTPCRDWSSARHVDANKG--------------------------------------------------YHVSFLRMRASDHGPPYKKHRLIAVFARGGPAVRDALAQMAL 577          
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: UPI001C4416DA (DNA cytosine methyltransferase n=2 Tax=Candidatus Magnetobacterium casensis TaxID=1455061 RepID=UPI001C4416DA)

HSP 1 Score: 58.9 bits (141), Expect = 8.940e-7
Identity = 45/175 (25.71%), Postives = 85/175 (48.57%), Query Frame = 1
Query:   28 KVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANR--GVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENV--VSIESMTRGQEAFALA----RERGYHICFLRLYASDFGPPYQRRRLFVVMAR 528
            +V D+ AG GGFS   +MAG +V+ A++ +  A   +  N    +  +   + L   E+ +        ++V GPPC   +   +   + G+ ++ R +L    +      Q  L+++ENV  +++     G++   +     R+ G+++    L A+DFG P  R RLFVV ++
Sbjct:   15 RVLDIFAGAGGFSLGFEMAGAKVIGAVEIDKWACDTFSYNHPDAIVIQKDIQTLTDQELLDVFETHHPNIIVGGPPCQGFS---ICNQNAGDPKDPRNSLFHEFLRVGHLFQPTLMIIENVPNLAVAKTAEGKKVLTIIESSLRDIGFYVYAATLQATDFGIPQIRNRLFVVASK 186          
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A521G213_9DELT (Cytosine-specific methyltransferase n=1 Tax=Candidatus Electronema sp. GS TaxID=2005002 RepID=A0A521G213_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 3.970e-6
Identity = 44/175 (25.14%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   28 KVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELST--RDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVS-IESMTRGQEAF-----ALARERGYHICFLRLYASDFGPPYQRRRLFVVMAR 528
             V D  AG GGFS   Q+AG +V+ A++ +  A   +  N      + +  + +   ++ +    +   +++ GPPC   +   +   + G+ ++ R +L    +     ++  ++++ENV + I++ T   E       +  R+ GYHI +  L A+++G P  R+RLFVV +R
Sbjct:    4 SVLDTFAGAGGFSLGFQLAGAKVIGAIEIDQWASETFQFNHPDATVIQSDIKRMTDKQILDTFGGTPPDIILGGPPCQGFS---ICNKNNGDHKDPRNSLFEEFIRVGRLLKPQIMIMENVPNLIKARTASYELVIDIITSELRKIGYHIDYKILEATNYGIPQIRKRLFVVASR 175          
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A521T143_9BACT (DNA (cytosine-5-)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A521T143_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 4.060e-6
Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = 1
Query:   19 DAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGA--GMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQ---EAFALARERGYHICFLRLYASDFGPPYQRRRLFVV 519
            D ++V DL  G GG S   ++AG +VV A+D +  A   Y   +     L T D+   +  + L A+G    +V+ GP C   ++       K +  + R  L    V  + +++   VV+ENV  + +  RG+   E  A  R  GY +    L A+DFG P  R RLF +
Sbjct:   29 DMLRVVDLFCGAGGLSFGFELAGFKVVAAVDSDPVAGATYRL-QNPNVPLFTEDVRNLKGKQLLEAAGGPVDLVIGGPSCQGFST-----HGKRDANDPRNFLFKEFVRLVKEVRPSWVVMENVKGMLTYDRGRYRDEIHASFRRIGYRVESRVLRAADFGVPQFRERLFFI 194          
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A662IQ45_9CREN (DNA cytosine methyltransferase n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662IQ45_9CREN)

HSP 1 Score: 55.8 bits (133), Expect = 9.460e-6
Identity = 52/183 (28.42%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   19 DAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGA-----GMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARE---RGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEV 543
            D     DL AG GG S   + AG +V +A D +  A  +Y AN      +  RD+   +  E L  +G       +++ GPPC   +   L   +     + R  L   ++  +  ++   +++ENVV + SM RG+   A+ RE   RGY      L A  +G P +R+R+F +  R G  +
Sbjct:   17 DRPVAIDLFAGGGGLSYGFEEAGFKVAFACDIDKDAAKIYAANLRETVYI-VRDIRRIDPQEVLETTGLRKSDISVLMGGPPCQGFSLMGLRNPN-----DPRNNLFKEMLRFIDFLRPSWIIIENVVGLLSMERGEPVKAIYRELSKRGYVCKHKILNALHYGVPQRRKRVFFIANRTGDPI 193          
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A0U3RVY6_9EURY (DNA-cytosine modification methylase n=4 Tax=Thermococcus TaxID=2263 RepID=A0A0U3RVY6_9EURY)

HSP 1 Score: 54.7 bits (130), Expect = 2.070e-5
Identity = 46/169 (27.22%), Postives = 80/169 (47.34%), Query Frame = 1
Query:   25 VKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDAN--RGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQM---PLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFV 516
            ++V DL AG GGFSR  + AG ++V A++        Y AN    V      + L + ++ +E+      +++ GPPC   T+  L R +    R        L++H +  +++   P+ V+E V  +      +      ++ GY + F  L A D+G P  RRR+F+
Sbjct:    1 MRVIDLFAGAGGFSRGFKEAGFKIVAAVENFPPKAKSYQANFPEAVIFVEDIKRLDSEKLKKEIGE--VEVIIGGPPCEPFTAINLKRKENPIDRLYNDPTGRLVLHFIRFLKVFKPPIFVMEEVPQVMEGPLREALRKEFKKAGYEVYFNVLNAYDYGTPQIRRRVFI 167          
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A1Z5HBB6_9GAMM (Cytosine-specific methyltransferase n=1 Tax=Bathymodiolus platifrons methanotrophic gill symbiont TaxID=113268 RepID=A0A1Z5HBB6_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 5.630e-5
Identity = 52/179 (29.05%), Postives = 79/179 (44.13%), Query Frame = 1
Query:   25 VKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAEL---STRDLYTSEMWEELAASGA-GMVVTGPPCTESTSARLVRADKGER---REGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRG---QEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARG 531
            +K  DL AG+GG S   ++AG +V+ A+++N A    Y  N     EL      +L   E +E+   SG   ++  GPPC   +        KG+R    + R  L       +  +     V+ENV +I +       +E        GY +    L ASD+G P  R+R F+V  RG
Sbjct:    1 MKSIDLFAGVGGMSLGFELAGFKVLLAVEKNGAIAEGYALNHP-NTELIVSGVENLNIPETFEQFKLSGGVDVIFGGPPCQGFSQ-------KGKRLNTSDDRNYLFKYFFEVVNYLHPEFFVIENVPNILTTANSFFYEEIKCSFSMIGYELKAQVLNASDYGVPQHRKRAFIVGQRG 171          
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: UPI0018981319 (DNA (cytosine-5-)-methyltransferase n=2 Tax=Streptococcus TaxID=1301 RepID=UPI0018981319)

HSP 1 Score: 53.5 bits (127), Expect = 5.980e-5
Identity = 49/181 (27.07%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   25 VKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTS----EMWEELAASGAG---MVVTGPPCTESTSARLVRADKGERREG--RAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERG-----YHICFLRLYASDFGPPYQRRRLFVVMA 525
            V+  D+ AG GG S  ++++G + + A++ N +A   Y+ N     ++   D+  S     ++ E+   G+    ++V GPPC   ++A       G R E   R  L    +  + + +  +V++ENVV I SM +G     + +E G     +H     L A  +G P  RRR+ +V A
Sbjct:  146 VEFCDIFAGAGGLSFGLELSGMQGIVAVELNKSASKTYEKNHSNKIKVINGDINDSGIQNTLFSEVKERGSSKPLVLVGGPPCQGFSTA-------GNRDETDIRNKLVDSYLKIVKETRPDIVIMENVVGILSMRKGDVIKGIHKELGELGYVFHEKPWILDAERYGVPQMRRRVIIVAA 319          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835Z872_9STRA1.600e-140100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YZ35_9STRA9.850e-4549.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001C4416DA8.940e-725.71DNA cytosine methyltransferase n=2 Tax=Candidatus ... [more]
A0A521G213_9DELT3.970e-625.14Cytosine-specific methyltransferase n=1 Tax=Candid... [more]
A0A521T143_9BACT4.060e-630.23DNA (cytosine-5-)-methyltransferase n=1 Tax=Acidob... [more]
A0A662IQ45_9CREN9.460e-628.42DNA cytosine methyltransferase n=1 Tax=Thermoprote... [more]
A0A0U3RVY6_9EURY2.070e-527.22DNA-cytosine modification methylase n=4 Tax=Thermo... [more]
A0A1Z5HBB6_9GAMM5.630e-529.05Cytosine-specific methyltransferase n=1 Tax=Bathym... [more]
UPI00189813195.980e-527.07DNA (cytosine-5-)-methyltransferase n=2 Tax=Strept... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_151contigContig_151:211429..212040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177392|e_gw1.151.22.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558,ko:K07486
EC2.1.1.37
Preferred namedcm
DescriptionDNA (cytosine-5-)-methyltransferase activity
COG categoryL
Max annot lvl2|Bacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria
Evalue1.08e-09
Seed ortholog1122973.KB904238_gene454
Hectar predicted targeting categoryother localisation
TranscriptId177714
TrackFilteredModels1
ProteinId177392
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177392gene_15177Tribonema minus UTEX_B_3156 geneContig_151 211429..212040 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15177_1exon_15177_1Tribonema minus UTEX_B_3156 exonContig_151 211429..212040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15177CDS_15177Tribonema minus UTEX_B_3156 CDSContig_151 211429..212040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177392Trimin1|177392|e_gw1.151.22.1Tribonema minus UTEX_B_3156 polypeptideContig_151 211429..212040 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15177 ID=mRNA_15177|Name=jgi.p|Trimin1|177392|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_151:211429..212040- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGACCCTGGGCCGGACGCGGTGAAAGTGACAGACCTCTGTGCCGG
TATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGCGTAGTGT
ACGCCATGGACCGCAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGT
GGTGTTGGTGCTGAGCTCTCCACCAGAGACCTATACACCTCTGAAATGTG
GGAGGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTT
GTACAGAGTCCACATCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT
AGAGAGGGCAGAGCTGCCCTCACACCCTTGCTGGTGCATCAGCTGACGCA
AATGCAGATGCCACTGGTGGTGTTGGAAAATGTGGTGTCTATTGAGTCAA
TGACTCGAGGACAGGAGGCCTTCGCATTGGCACGCGAAAGGGGGTATCAT
ATCTGCTTCCTACGGCTGTACGCCAGTGACTTTGGGCCACCATACCAACG
GCGGCGCTTATTTGTAGTCATGGCTCGGGGTGGGACTGAGGTGCGTGACG
CCCTAGCACAGATGTCTCTGCAATTTCCTCAGTGGACGGCTGCCTCCAGA
TCAGCAGTGTAG
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protein sequence of jgi.p|Trimin1|177392

>Trimin1|177392|e_gw1.151.22.1 ID=Trimin1|177392|e_gw1.151.22.1|Name=jgi.p|Trimin1|177392|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANR
GVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGER
REGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYH
ICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSLQFPQWTAASR
SAV*
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mRNA from alignment at Contig_151:211429..212040-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15177 ID=mRNA_15177|Name=jgi.p|Trimin1|177392|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_151:211429..212040- (Tribonema minus UTEX_B_3156 )
ATGGGGGACCCTGGGCCGGACGCGGTGAAAGTGACAGACCTCTGTGCCGG TATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGCGTAGTGT ACGCCATGGACCGCAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGT GGTGTTGGTGCTGAGCTCTCCACCAGAGACCTATACACCTCTGAAATGTG GGAGGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTT GTACAGAGTCCACATCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT AGAGAGGGCAGAGCTGCCCTCACACCCTTGCTGGTGCATCAGCTGACGCA AATGCAGATGCCACTGGTGGTGTTGGAAAATGTGGTGTCTATTGAGTCAA TGACTCGAGGACAGGAGGCCTTCGCATTGGCACGCGAAAGGGGGTATCAT ATCTGCTTCCTACGGCTGTACGCCAGTGACTTTGGGCCACCATACCAACG GCGGCGCTTATTTGTAGTCATGGCTCGGGGTGGGACTGAGGTGCGTGACG CCCTAGCACAGATGTCTCTGCAATTTCCTCAGTGGACGGCTGCCTCCAGA TCAGCAGTGTAG
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Coding sequence (CDS) from alignment at Contig_151:211429..212040-

>mRNA_15177 ID=mRNA_15177|Name=jgi.p|Trimin1|177392|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_151:211429..212040- (Tribonema minus UTEX_B_3156 )
ATGGGGGACCCTGGGCCGGACGCGGTGAAAGTGACAGACCTCTGTGCCGG
TATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGCGTAGTGT
ACGCCATGGACCGCAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGT
GGTGTTGGTGCTGAGCTCTCCACCAGAGACCTATACACCTCTGAAATGTG
GGAGGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTT
GTACAGAGTCCACATCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT
AGAGAGGGCAGAGCTGCCCTCACACCCTTGCTGGTGCATCAGCTGACGCA
AATGCAGATGCCACTGGTGGTGTTGGAAAATGTGGTGTCTATTGAGTCAA
TGACTCGAGGACAGGAGGCCTTCGCATTGGCACGCGAAAGGGGGTATCAT
ATCTGCTTCCTACGGCTGTACGCCAGTGACTTTGGGCCACCATACCAACG
GCGGCGCTTATTTGTAGTCATGGCTCGGGGTGGGACTGAGGTGCGTGACG
CCCTAGCACAGATGTCTCTGCAATTTCCTCAGTGGACGGCTGCCTCCAGA
TCAGCAGTGTAG
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