mRNA_15177 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A835Z872_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z872_9STRA) HSP 1 Score: 399 bits (1025), Expect = 1.600e-140 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1
Query: 1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSLQFPQWTAASRSAV 609
MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSLQFPQWTAASRSAV
Sbjct: 1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSLQFPQWTAASRSAV 203
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A835YZ35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ35_9STRA) HSP 1 Score: 168 bits (426), Expect = 9.850e-45 Identity = 93/188 (49.47%), Postives = 109/188 (57.98%), Query Frame = 1
Query: 7 DPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEVRDALAQMSL 570
DPGPDA KV DLCAG+GGFSRAVQ+AGGRVVYAMD NA+ KP+YDANRG GAEL+ DLY + W L +SGAG+ V G PC + +SAR V A+KG YH+ FLR+ ASD GPPY++ RL V ARGG VRDALAQM+L
Sbjct: 440 DPGPDAPKVADLCAGLGGFSRAVQLAGGRVVYAMDNNASVKPLYDANRGAGAELTISDLYLPDTWTALVSSGAGVAVAGTPCRDWSSARHVDANKG--------------------------------------------------YHVSFLRMRASDHGPPYKKHRLIAVFARGGPAVRDALAQMAL 577
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: UPI001C4416DA (DNA cytosine methyltransferase n=2 Tax=Candidatus Magnetobacterium casensis TaxID=1455061 RepID=UPI001C4416DA) HSP 1 Score: 58.9 bits (141), Expect = 8.940e-7 Identity = 45/175 (25.71%), Postives = 85/175 (48.57%), Query Frame = 1
Query: 28 KVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANR--GVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENV--VSIESMTRGQEAFALA----RERGYHICFLRLYASDFGPPYQRRRLFVVMAR 528
+V D+ AG GGFS +MAG +V+ A++ + A + N + + + L E+ + ++V GPPC + + + G+ ++ R +L + Q L+++ENV +++ G++ + R+ G+++ L A+DFG P R RLFVV ++
Sbjct: 15 RVLDIFAGAGGFSLGFEMAGAKVIGAVEIDKWACDTFSYNHPDAIVIQKDIQTLTDQELLDVFETHHPNIIVGGPPCQGFS---ICNQNAGDPKDPRNSLFHEFLRVGHLFQPTLMIIENVPNLAVAKTAEGKKVLTIIESSLRDIGFYVYAATLQATDFGIPQIRNRLFVVASK 186
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A521G213_9DELT (Cytosine-specific methyltransferase n=1 Tax=Candidatus Electronema sp. GS TaxID=2005002 RepID=A0A521G213_9DELT) HSP 1 Score: 57.0 bits (136), Expect = 3.970e-6 Identity = 44/175 (25.14%), Postives = 87/175 (49.71%), Query Frame = 1
Query: 28 KVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELST--RDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVS-IESMTRGQEAF-----ALARERGYHICFLRLYASDFGPPYQRRRLFVVMAR 528
V D AG GGFS Q+AG +V+ A++ + A + N + + + + ++ + + +++ GPPC + + + G+ ++ R +L + ++ ++++ENV + I++ T E + R+ GYHI + L A+++G P R+RLFVV +R
Sbjct: 4 SVLDTFAGAGGFSLGFQLAGAKVIGAIEIDQWASETFQFNHPDATVIQSDIKRMTDKQILDTFGGTPPDIILGGPPCQGFS---ICNKNNGDHKDPRNSLFEEFIRVGRLLKPQIMIMENVPNLIKARTASYELVIDIITSELRKIGYHIDYKILEATNYGIPQIRKRLFVVASR 175
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A521T143_9BACT (DNA (cytosine-5-)-methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A521T143_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 4.060e-6 Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = 1
Query: 19 DAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGA--GMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQ---EAFALARERGYHICFLRLYASDFGPPYQRRRLFVV 519
D ++V DL G GG S ++AG +VV A+D + A Y + L T D+ + + L A+G +V+ GP C ++ K + + R L V + +++ VV+ENV + + RG+ E A R GY + L A+DFG P R RLF +
Sbjct: 29 DMLRVVDLFCGAGGLSFGFELAGFKVVAAVDSDPVAGATYRL-QNPNVPLFTEDVRNLKGKQLLEAAGGPVDLVIGGPSCQGFST-----HGKRDANDPRNFLFKEFVRLVKEVRPSWVVMENVKGMLTYDRGRYRDEIHASFRRIGYRVESRVLRAADFGVPQFRERLFFI 194
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A662IQ45_9CREN (DNA cytosine methyltransferase n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662IQ45_9CREN) HSP 1 Score: 55.8 bits (133), Expect = 9.460e-6 Identity = 52/183 (28.42%), Postives = 84/183 (45.90%), Query Frame = 1
Query: 19 DAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGA-----GMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARE---RGYHICFLRLYASDFGPPYQRRRLFVVMARGGTEV 543
D DL AG GG S + AG +V +A D + A +Y AN + RD+ + E L +G +++ GPPC + L + + R L ++ + ++ +++ENVV + SM RG+ A+ RE RGY L A +G P +R+R+F + R G +
Sbjct: 17 DRPVAIDLFAGGGGLSYGFEEAGFKVAFACDIDKDAAKIYAANLRETVYI-VRDIRRIDPQEVLETTGLRKSDISVLMGGPPCQGFSLMGLRNPN-----DPRNNLFKEMLRFIDFLRPSWIIIENVVGLLSMERGEPVKAIYRELSKRGYVCKHKILNALHYGVPQRRKRVFFIANRTGDPI 193
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A0U3RVY6_9EURY (DNA-cytosine modification methylase n=4 Tax=Thermococcus TaxID=2263 RepID=A0A0U3RVY6_9EURY) HSP 1 Score: 54.7 bits (130), Expect = 2.070e-5 Identity = 46/169 (27.22%), Postives = 80/169 (47.34%), Query Frame = 1
Query: 25 VKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDAN--RGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREGRAALTPLLVHQLTQMQM---PLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFV 516
++V DL AG GGFSR + AG ++V A++ Y AN V + L + ++ +E+ +++ GPPC T+ L R + R L++H + +++ P+ V+E V + + ++ GY + F L A D+G P RRR+F+
Sbjct: 1 MRVIDLFAGAGGFSRGFKEAGFKIVAAVENFPPKAKSYQANFPEAVIFVEDIKRLDSEKLKKEIGE--VEVIIGGPPCEPFTAINLKRKENPIDRLYNDPTGRLVLHFIRFLKVFKPPIFVMEEVPQVMEGPLREALRKEFKKAGYEVYFNVLNAYDYGTPQIRRRVFI 167
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: A0A1Z5HBB6_9GAMM (Cytosine-specific methyltransferase n=1 Tax=Bathymodiolus platifrons methanotrophic gill symbiont TaxID=113268 RepID=A0A1Z5HBB6_9GAMM) HSP 1 Score: 53.5 bits (127), Expect = 5.630e-5 Identity = 52/179 (29.05%), Postives = 79/179 (44.13%), Query Frame = 1
Query: 25 VKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAEL---STRDLYTSEMWEELAASGA-GMVVTGPPCTESTSARLVRADKGER---REGRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRG---QEAFALARERGYHICFLRLYASDFGPPYQRRRLFVVMARG 531
+K DL AG+GG S ++AG +V+ A+++N A Y N EL +L E +E+ SG ++ GPPC + KG+R + R L + + V+ENV +I + +E GY + L ASD+G P R+R F+V RG
Sbjct: 1 MKSIDLFAGVGGMSLGFELAGFKVLLAVEKNGAIAEGYALNHP-NTELIVSGVENLNIPETFEQFKLSGGVDVIFGGPPCQGFSQ-------KGKRLNTSDDRNYLFKYFFEVVNYLHPEFFVIENVPNILTTANSFFYEEIKCSFSMIGYELKAQVLNASDYGVPQHRKRAFIVGQRG 171
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Match: UPI0018981319 (DNA (cytosine-5-)-methyltransferase n=2 Tax=Streptococcus TaxID=1301 RepID=UPI0018981319) HSP 1 Score: 53.5 bits (127), Expect = 5.980e-5 Identity = 49/181 (27.07%), Postives = 86/181 (47.51%), Query Frame = 1
Query: 25 VKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTS----EMWEELAASGAG---MVVTGPPCTESTSARLVRADKGERREG--RAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERG-----YHICFLRLYASDFGPPYQRRRLFVVMA 525
V+ D+ AG GG S ++++G + + A++ N +A Y+ N ++ D+ S ++ E+ G+ ++V GPPC ++A G R E R L + + + + +V++ENVV I SM +G + +E G +H L A +G P RRR+ +V A
Sbjct: 146 VEFCDIFAGAGGLSFGLELSGMQGIVAVELNKSASKTYEKNHSNKIKVINGDINDSGIQNTLFSEVKERGSSKPLVLVGGPPCQGFSTA-------GNRDETDIRNKLVDSYLKIVKETRPDIVIMENVVGILSMRKGDVIKGIHKELGELGYVFHEKPWILDAERYGVPQMRRRVIIVAA 319 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177392 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15177 ID=mRNA_15177|Name=jgi.p|Trimin1|177392|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_151:211429..212040- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGGGACCCTGGGCCGGACGCGGTGAAAGTGACAGACCTCTGTGCCGGback to top protein sequence of jgi.p|Trimin1|177392 >Trimin1|177392|e_gw1.151.22.1 ID=Trimin1|177392|e_gw1.151.22.1|Name=jgi.p|Trimin1|177392|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRback to top mRNA from alignment at Contig_151:211429..212040- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15177 ID=mRNA_15177|Name=jgi.p|Trimin1|177392|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_151:211429..212040- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_151:211429..212040- >mRNA_15177 ID=mRNA_15177|Name=jgi.p|Trimin1|177392|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_151:211429..212040- (Tribonema minus UTEX_B_3156 )back to top |