mRNA_15174 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353234
Unique NamemRNA_15174
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353234 vs. uniprot
Match: A0A836CLL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL4_9STRA)

HSP 1 Score: 651 bits (1680), Expect = 9.810e-233
Identity = 362/406 (89.16%), Postives = 367/406 (90.39%), Query Frame = 1 
Query:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPITLPIKLTGGQRVSKLHDVLARTAVYVDQKVANMLWDVSNLQPMAFFI----PRSGHS--------------QRQGDCELTRLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFGGGGRPVGSXXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVLCNVVPGPCKYRHFDT*GGGPLSLRERGPMAAAVTREAAEVWGLTR 1164
            MSGESGESAEQATENPVDISDRLERF+NSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGV  TLPIKLTGGQRVSKLHDVLARTAVYVDQKVANMLWDVSNLQP+AF       RSG +               R    EL  LGLTELPQGSRTF+SEM VCEVMLAKFEMLVVHQEGVTISDADLAAIQGAI SDLDEWTSNLDA+STSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAF GGGRPVGS XXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNP  CNVVPGPCKYRH DT GGGPLSLRERGPMAAAVTREAAEVWGLTR
Sbjct:    1 MSGESGESAEQATENPVDISDRLERFINSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVLTTLPIKLTGGQRVSKLHDVLARTAVYVDQKVANMLWDVSNLQPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFVSEMAVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIQSDLDEWTSNLDAMSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPAPCNVVPGPCKYRHSDTKGGGPLSLRERGPMAAAVTREAAEVWGLTR 406
[Close]
BLAST of jgi.p|Trimin1|353234 vs. uniprot
Match: A0A835YJA4_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA4_9STRA)

HSP 1 Score: 565 bits (1456), Expect = 1.830e-200
Identity = 323/376 (85.90%), Postives = 327/376 (86.97%), Query Frame = 1 
Query:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPITLPIKLTGGQRVSKLHDVLARTAVYVDQKVANMLWDVSNLQPMAFFI----PRSGHS--------------QRQGDCELTRLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFGGGGRPVGSXXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVLCNVVPGPCKYRHFDT 1074
            MSGESGESAEQATENPVDISDRLERFMNSVEQRLGAL+DKIGAMAGSMQDV+AQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVP TLPIKLTGGQR SKLHDVLARTAVYVDQK            P AF       RSG +               R    EL  LGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHH+LAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAF GGGRPVGS XXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPV  NVVPGPCKYRH DT
Sbjct:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALQDKIGAMAGSMQDVMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRASKLHDVLARTAVYVDQK------------PNAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT 364
[Close]
BLAST of jgi.p|Trimin1|353234 vs. uniprot
Match: A0A836CHX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX2_9STRA)

HSP 1 Score: 355 bits (910), Expect = 8.570e-119
Identity = 196/205 (95.61%), Postives = 196/205 (95.61%), Query Frame = 1 
Query:  466 ELTRLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFGGGGRPVGSXXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP--YGVCWVWWRHVKEQNPVLCNVVPGPCKYRHFDT 1074
            EL  LGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAF GGGRPVGS XXXXXXXXXXXXXXXXXGTRSQPRGAPANCP  YG CWVWWRHVKEQNPV CNVVPGPCKYRH DT
Sbjct:   76 ELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280
[Close]
BLAST of jgi.p|Trimin1|353234 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 291 bits (746), Expect = 6.790e-85
Identity = 195/346 (56.36%), Postives = 202/346 (58.38%), Query Frame = 1 
Query:  130 MAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPITLPIKLTGGQRVSKLHDVLARTAV-YVDQKVANMLWDVSNLQPMAFFIPRSGHSQRQGDCELTRLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFGGGGRPVGSXXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVLCNVVPGPCKYRHFDT*GGGPLSLRERGPMAAAVTREAAEVWGLTR 1164
            MAGS+QDVVAQEVQLQVEESSRSTSSEDTRERK LMENEAYR HLLLRCGVP TLPIKLTGGQRVSKLHDVLARTAV     +    L+    L                   EL  LGLTELPQGSRTFMS+MEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDL    +  DALST LLQHHRL PPFGSGEALDVPDIPTVA      AL+V                                                                             P L          RH    GGGPLSL+ERGPMAAAVTR AAEVWGLTR
Sbjct:    1 MAGSLQDVVAQEVQLQVEESSRSTSSEDTRERKLLMENEAYRCHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAVGKATARSYQALYKGVKLMR----------------AELIGLGLTELPQGSRTFMSKMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLTSGPAT-DALSTILLQHHRLPPPFGSGEALDVPDIPTVA------ALQV-----------------------------------------------------------------------------PPL----------RHL---GGGPLSLQERGPMAAAVTRVAAEVWGLTR 233
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353234 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CLL4_9STRA9.810e-23389.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJA4_9STRA1.830e-20085.90Uncharacterized protein n=4 Tax=Tribonema minus Ta... [more]
A0A836CHX2_9STRA8.570e-11995.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCV7_9STRA6.790e-8556.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_151contigContig_151:190711..191929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353234|estExt_Genemark1.C_Ctg_1510029
Hectar predicted targeting categoryother localisation
TranscriptId353556
TrackFilteredModels1
ProteinId353234
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353234gene_15174Tribonema minus UTEX_B_3156 geneContig_151 190711..191929 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15174_2exon_15174_2Tribonema minus UTEX_B_3156 exonContig_151 190711..191406 -
exon_15174_1exon_15174_1Tribonema minus UTEX_B_3156 exonContig_151 191462..191929 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15174UTR3_15174Tribonema minus UTEX_B_3156 three_prime_UTRContig_151 190711..190797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15174CDS_15174Tribonema minus UTEX_B_3156 CDSContig_151 191462..191929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353234Trimin1|353234|estExt_Genemark1.C_Ctg_1510029Tribonema minus UTEX_B_3156 polypeptideContig_151 190798..191929 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15174 ID=mRNA_15174|Name=jgi.p|Trimin1|353234|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1164bp|location=Sequence derived from alignment at Contig_151:190711..191929- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACGGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGGAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTAGTGGCGCAGGAGGTGCAGCTCCAGGTCGAAGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCAATCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGTCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAAGTGGCGAACATGCTGTGGGACGTCT
CCAACCTGCAGCCGATGGCCTTTTTCATTCCGCGATCCGGCCACTCGCAG
CGGCAAGGCGACTGCGAGCTGACCAGGCTCGGGCTCACGGAGCTTCCACA
GGGCTCGCGGACCTTCATGTCGGAAATGGAGGTCTGCGAGGTCATGCTCG
CAAAGTTTGAGATGCTGGTGGTACACCAGGAAGGGGTCACGATCTCGGAC
GCAGATCTGGCGGCCATCCAGGGGGCCATCCACTCGGACTTGGACGAGTG
GACCAGCAACCTCGACGCGCTGTCGACGAGTCTGCTCCAGCACCACCGGT
TGGCCCCCCCCTTTGGGAGCGGCGAGGCACTGGACGTGCCGGACATCCCG
ACGGTGGCGTGGACCAACGCAGCTCGCGCGCTGGAGGTCAACGGGGACAT
AGCGGCGCGAGCGGTGGCGGCGGCGCGCAAGCGCAAGTACGACGGCGCGT
TCGGGGGCGGCGGCAGACCCGTCGGCTCGGGGGGCGGCGGCGCGGGTGCA
GGTGGGGGCGCTGGCGCAGCGGCGGGAGCAGGAGGCACGCGCTCACAGCC
GCGGGGAGCGCCGGCGAACTGCCCTTATGGTGTTTGCTGGGTGTGGTGGA
GGCACGTGAAGGAGCAGAACCCAGTCCTGTGCAACGTCGTCCCAGGGCCC
TGCAAGTACCGCCACTTCGACACCTAGGGGGGCGGGCCCCTGAGCCTGCG
GGAGCGGGGGCCGATGGCGGCAGCGGTGACGAGGGAGGCAGCGGAGGTGT
GGGGCCTTACGCGG
back to top

protein sequence of jgi.p|Trimin1|353234

>Trimin1|353234|estExt_Genemark1.C_Ctg_1510029 ID=Trimin1|353234|estExt_Genemark1.C_Ctg_1510029|Name=jgi.p|Trimin1|353234|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=359bp
MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALEDKIGAMAGSMQD
VVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPITLPI
KLTGGQRVSKLHDVLARTAVYVDQKVANMLWDVSNLQPMAFFIPRSGHSQ
RQGDCELTRLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISD
ADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIP
TVAWTNAARALEVNGDIAARAVAAARKRKYDGAFGGGGRPVGSGGGGAGA
GGGAGAAAGAGGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVLCNVVPGP
CKYRHFDT*
back to top

mRNA from alignment at Contig_151:190711..191929-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15174 ID=mRNA_15174|Name=jgi.p|Trimin1|353234|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1219bp|location=Sequence derived from alignment at Contig_151:190711..191929- (Tribonema minus UTEX_B_3156 )
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACGGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGGAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTAGTGGCGCAGGAGGTGCAGCTCCAGGTCGAAGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCAATCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGTCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAAGTGGCGAACATGCTGTGGGACGTCT
CCAACCTGCAGCCGATGGCCTTTTTCATTCCGCGATCCGGCCACTCGCAG
CGGCAAGGCGACTGCGAGGTCGTATCAGGCCCTGTATACGGGTTTTAAGC
TGATGCGGGCAGCCCTGGCGGAGCTGACCAGGCTCGGGCTCACGGAGCTT
CCACAGGGCTCGCGGACCTTCATGTCGGAAATGGAGGTCTGCGAGGTCAT
GCTCGCAAAGTTTGAGATGCTGGTGGTACACCAGGAAGGGGTCACGATCT
CGGACGCAGATCTGGCGGCCATCCAGGGGGCCATCCACTCGGACTTGGAC
GAGTGGACCAGCAACCTCGACGCGCTGTCGACGAGTCTGCTCCAGCACCA
CCGGTTGGCCCCCCCCTTTGGGAGCGGCGAGGCACTGGACGTGCCGGACA
TCCCGACGGTGGCGTGGACCAACGCAGCTCGCGCGCTGGAGGTCAACGGG
GACATAGCGGCGCGAGCGGTGGCGGCGGCGCGCAAGCGCAAGTACGACGG
CGCGTTCGGGGGCGGCGGCAGACCCGTCGGCTCGGGGGGCGGCGGCGCGG
GTGCAGGTGGGGGCGCTGGCGCAGCGGCGGGAGCAGGAGGCACGCGCTCA
CAGCCGCGGGGAGCGCCGGCGAACTGCCCTTATGGTGTTTGCTGGGTGTG
GTGGAGGCACGTGAAGGAGCAGAACCCAGTCCTGTGCAACGTCGTCCCAG
GGCCCTGCAAGTACCGCCACTTCGACACCTAGGGGGGCGGGCCCCTGAGC
CTGCGGGAGCGGGGGCCGATGGCGGCAGCGGTGACGAGGGAGGCAGCGGA
GGTGTGGGGCCTTACGCGG
back to top

Coding sequence (CDS) from alignment at Contig_151:190711..191929-

>mRNA_15174 ID=mRNA_15174|Name=jgi.p|Trimin1|353234|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1077bp|location=Sequence derived from alignment at Contig_151:190711..191929- (Tribonema minus UTEX_B_3156 )
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACGGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGGAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTAGTGGCGCAGGAGGTGCAGCTCCAGGTCGAAGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCAATCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGTCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAAGTGGCGAACATGCTGTGGGACGTCT
CCAACCTGCAGCCGATGGCCTTTTTCATTCCGCGATCCGGCCACTCGCAG
CGGCAAGGCGACTGCGAGCTGACCAGGCTCGGGCTCACGGAGCTTCCACA
GGGCTCGCGGACCTTCATGTCGGAAATGGAGGTCTGCGAGGTCATGCTCG
CAAAGTTTGAGATGCTGGTGGTACACCAGGAAGGGGTCACGATCTCGGAC
GCAGATCTGGCGGCCATCCAGGGGGCCATCCACTCGGACTTGGACGAGTG
GACCAGCAACCTCGACGCGCTGTCGACGAGTCTGCTCCAGCACCACCGGT
TGGCCCCCCCCTTTGGGAGCGGCGAGGCACTGGACGTGCCGGACATCCCG
ACGGTGGCGTGGACCAACGCAGCTCGCGCGCTGGAGGTCAACGGGGACAT
AGCGGCGCGAGCGGTGGCGGCGGCGCGCAAGCGCAAGTACGACGGCGCGT
TCGGGGGCGGCGGCAGACCCGTCGGCTCGGGGGGCGGCGGCGCGGGTGCA
GGTGGGGGCGCTGGCGCAGCGGCGGGAGCAGGAGGCACGCGCTCACAGCC
GCGGGGAGCGCCGGCGAACTGCCCTTATGGTGTTTGCTGGGTGTGGTGGA
GGCACGTGAAGGAGCAGAACCCAGTCCTGTGCAACGTCGTCCCAGGGCCC
TGCAAGTACCGCCACTTCGACACCTAG
back to top