mRNA_15173 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151863
Unique NamemRNA_15173
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA)

HSP 1 Score: 214 bits (544), Expect = 7.250e-69
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    1 RVVHDLSALLHGESVNNTTEFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGG 315
            RVVHDLSALLHGESVNNTT FEEAPVV CGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGG
Sbjct:  106 RVVHDLSALLHGESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGG 210
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 200 bits (509), Expect = 7.790e-65
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1 
Query:    1 RVVHDLSALLHGESVNNTTEFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPG 294
            RVVHDLSALLHGESVNNTT FEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPG
Sbjct:   23 RVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPG 120
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.260e-34
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 RVVHDLSALLHGESV-NNTTEFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALD 207
            RVVHDLSALLHGESV NNTT FE+APVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALD
Sbjct:  423 RVVHDLSALLHGESVDNNTTVFEDAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALD 492
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A835YMP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.880e-25
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:  169 MDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGG 315
            MDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGG
Sbjct:  110 MDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWWSLAGG 158
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A835ZCS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCS3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.890e-17
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 RVVHDLSALLHGESVNNTTEFEEAPVVECGHIFEAMLYRIWSLRQAWPRK 150
            RVVHDLSALLHGESVNNTT FEEAPVVECGHIFEAMLY +W+     PR+
Sbjct:  104 RVVHDLSALLHGESVNNTTVFEEAPVVECGHIFEAMLY-VWTCIYKGPRE 152
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A835YTQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTQ8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.540e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:  235 YNDLVVVDLRLQFGWRSSPGWWSLAGG 315
            YNDLVVVDLRLQFGWRSSPGWWSLAGG
Sbjct:  119 YNDLVVVDLRLQFGWRSSPGWWSLAGG 145
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A1B7WKV9_APHFL (Uncharacterized protein (Fragment) n=1 Tax=Aphanizomenon flos-aquae WA102 TaxID=1710896 RepID=A0A1B7WKV9_APHFL)

HSP 1 Score: 58.9 bits (141), Expect = 6.730e-8
Identity = 36/105 (34.29%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:    1 RVVHDLS---ALLHGESVNNTTEFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGPLLGYRYND-LVVVDLRLQFGWRSSPGWWS 303
            R+ HD S   +     SVN+  +  +  V   G  F  ++Y I  LRQ +P +RIL++K+D KSA+R++ L     +    Y D L+++ LR+ FG   +P  WS
Sbjct:   41 RLTHDQSFNPSRTEKRSVNDRVDASQLTVARFGKAFSRLIYHISYLRQLYPDERILMTKVDWKSAYRRIHLRPSTAVKSCTYIDGLLLMALRMTFGGAPNPAQWS 145
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A6H5JG94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG94_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.180e-7
Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 1 
Query:    1 RVVHDLSALLHGES----VNNTTEFEEAPVVECGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDV-RGPLLGYRYNDLVVVDLRLQFGWRSSPG 294
            RV++DLS      +    +N  T  +  P   C       L  + SLR   P+  +L++  DV  AFR + ++  +    GY   DL+VVDLRL FGW  SPG
Sbjct:  125 RVINDLSFNPTDRTTKGGLNADTNADTIPPCLCAGALPGFLTALVSLRAKCPKLHLLMATTDVNDAFRNVRINPDQAHNFGYTLGDLLVVDLRLPFGWTGSPG 227
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BLAST of jgi.p|Trimin1|151863 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.530e-5
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 RVVHDL---SALLHGESVNNTTEFEEAPVVECGHIFEAMLYRIWSLRQAWPRK-RILISKMDVKSAFRQLALD 207
            R++HDL   S +    SVN+ T+F++AP    GH+   +L R+  LRQ       ILI ++DVK AFRQ+ +D
Sbjct:  731 RIIHDLTFTSGVPIRTSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVD 803
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151863 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YZC0_9STRA7.250e-6998.10Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CKZ7_9STRA7.790e-6598.98Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CCV7_9STRA3.260e-3495.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMP6_9STRA7.880e-25100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCS3_9STRA2.890e-1780.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTQ8_9STRA1.540e-9100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1B7WKV9_APHFL6.730e-834.29Uncharacterized protein (Fragment) n=1 Tax=Aphaniz... [more]
A0A6H5JG94_9PHAE2.180e-734.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAY4_9PHAE3.530e-541.10C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_151contigContig_151:189062..189376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151863|gw1.151.57.1
Max annot lvl4776|Peronosporales
EggNOG OGs2977H@1|root,2RE6Z@2759|Eukaryota,3QF70@4776|Peronosporales
Evalue9.19e-10
Seed ortholog67593.Physo132534
Hectar predicted targeting categoryother localisation
TranscriptId152185
TrackFilteredModels1
ProteinId151863
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151863gene_15173Tribonema minus UTEX_B_3156 geneContig_151 189062..189376 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15173_1exon_15173_1Tribonema minus UTEX_B_3156 exonContig_151 189062..189376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15173CDS_15173Tribonema minus UTEX_B_3156 CDSContig_151 189062..189376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151863Trimin1|151863|gw1.151.57.1Tribonema minus UTEX_B_3156 polypeptideContig_151 189062..189376 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15173 ID=mRNA_15173|Name=jgi.p|Trimin1|151863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_151:189062..189376- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGTGGTGCATGACTTGTCTGCTTTGCTACATGGCGAGAGTGTCAACAA
TACCACGGAGTTTGAGGAGGCTCCTGTCGTGGAGTGTGGGCATATATTTG
AGGCGATGCTGTACAGGATATGGTCGTTACGGCAGGCATGGCCACGCAAA
CGCATTTTGATTTCGAAGATGGACGTGAAGTCCGCGTTTCGTCAGTTGGC
GCTCGACGTAAGAGGCCCATTGCTCGGCTACAGGTACAATGATCTGGTGG
TTGTGGACCTGCGGTTGCAGTTCGGTTGGCGGTCTTCACCGGGGTGGTGG
AGCCTGGCCGGCGGG
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protein sequence of jgi.p|Trimin1|151863

>Trimin1|151863|gw1.151.57.1 ID=Trimin1|151863|gw1.151.57.1|Name=jgi.p|Trimin1|151863|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
RVVHDLSALLHGESVNNTTEFEEAPVVECGHIFEAMLYRIWSLRQAWPRK
RILISKMDVKSAFRQLALDVRGPLLGYRYNDLVVVDLRLQFGWRSSPGWW
SLAGG
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mRNA from alignment at Contig_151:189062..189376-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15173 ID=mRNA_15173|Name=jgi.p|Trimin1|151863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_151:189062..189376- (Tribonema minus UTEX_B_3156 )
CGCGTGGTGCATGACTTGTCTGCTTTGCTACATGGCGAGAGTGTCAACAA
TACCACGGAGTTTGAGGAGGCTCCTGTCGTGGAGTGTGGGCATATATTTG
AGGCGATGCTGTACAGGATATGGTCGTTACGGCAGGCATGGCCACGCAAA
CGCATTTTGATTTCGAAGATGGACGTGAAGTCCGCGTTTCGTCAGTTGGC
GCTCGACGTAAGAGGCCCATTGCTCGGCTACAGGTACAATGATCTGGTGG
TTGTGGACCTGCGGTTGCAGTTCGGTTGGCGGTCTTCACCGGGGTGGTGG
AGCCTGGCCGGCGGG
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Coding sequence (CDS) from alignment at Contig_151:189062..189376-

>mRNA_15173 ID=mRNA_15173|Name=jgi.p|Trimin1|151863|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_151:189062..189376- (Tribonema minus UTEX_B_3156 )
CGCGTGGTGCATGACTTGTCTGCTTTGCTACATGGCGAGAGTGTCAACAA
TACCACGGAGTTTGAGGAGGCTCCTGTCGTGGAGTGTGGGCATATATTTG
AGGCGATGCTGTACAGGATATGGTCGTTACGGCAGGCATGGCCACGCAAA
CGCATTTTGATTTCGAAGATGGACGTGAAGTCCGCGTTTCGTCAGTTGGC
GCTCGACGTAAGAGGCCCATTGCTCGGCTACAGGTACAATGATCTGGTGG
TTGTGGACCTGCGGTTGCAGTTCGGTTGGCGGTCTTCACCGGGGTGGTGG
AGCCTGGCCGGCGGG
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