mRNA_1516 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161654
Unique NamemRNA_1516
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A835Z8B2_9STRA (Putative cysteine protease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B2_9STRA)

HSP 1 Score: 694 bits (1792), Expect = 5.480e-253
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1
Query:    1 MGARTIAVAAVVGVCLGVLLTLLYINRRRIYTAVAAAAPDDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAHAT 1008
            MGARTIAVAAVVGVCLGVLLTLLYINRRRIYTAVAAAAPDDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAHAT
Sbjct:    1 MGARTIAVAAVVGVCLGVLLTLLYINRRRIYTAVAAAAPDDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAHAT 336          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A836CH74_9STRA (FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH74_9STRA)

HSP 1 Score: 382 bits (982), Expect = 5.350e-130
Identity = 176/312 (56.41%), Postives = 233/312 (74.68%), Query Frame = 1
Query:   64 LLYINRRRIYTAVAAAAPDDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGAR-GIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNH 996
            LL I +R     V       LP+YFKW+E++L+PVRNQ+GCA+CW++SVCDM++D++NL++GG +G N LS QYL+SC+ GH GC+ G SPE  YDLPQLT+ GIPLE  FPY A+DT  C    +G+ RV+TVK+T  D+C++P TV    +Q VI+ NIV MK+AL   PIVGTLRVH D+Y YDG +IY VTPGS  IGYHAV +VG+A+   N  EPGF + YWV +SSWG++WGA+ G + GF YVKMG NEADIESRAS C+V +P+ +KDA+AATD+  M Y+SY++YV DP+R +F+G++   H
Sbjct:    3 LLIIYKRHSIRRVIGLGSVGLPSYFKWREKWLMPVRNQRGCASCWSISVCDMLADSLNLKTGGAYGLNPLSSQYLLSCYRGHLGCDIGDSPENVYDLPQLTEQGIPLESAFPYQASDTLACPKFADGIQRVKTVKSTAEDICLEPNTVVFTSKQDVINRNIVNMKRALQRSPIVGTLRVHHDVYNYDGKSIYTVTPGSPLIGYHAVLIVGYADANANTHEPGFSEGYWVAKSSWGNSWGAQDGDKRGFIYVKMGVNEADIESRASRCDVVVPDELKDAVAATDMTQMAYSSYSEYVNDPDRFNFLGSVKSAH 314          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A835YX55_9STRA (Putative cysteine protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX55_9STRA)

HSP 1 Score: 336 bits (862), Expect = 2.280e-111
Identity = 168/305 (55.08%), Postives = 210/305 (68.85%), Query Frame = 1
Query:   91 YTAVAAAAP--DD---LPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGA-RGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAM 984
            Y + + A P  DD   LP+Y K+KE+FL+PVR+Q+ CAACW+ SV DMM+DT+N ++ G +G+  LS QYL+SC S H GC  GGSPE  YDLPQLTDAG PL+ + PY   +T PC+ +   VLRVRTV NT   LC DP       R   I  N+  MK+ALL  GPIVGTLRV  DLY Y G  I++  P S+  GYHAVE+VGW +E VN+AEPGFD AYW+VRSSWG +WG  +G+RYG+AYV MG N ADIESRASVC VE P ++++    T     RY SY  YV+DPER +F+G +
Sbjct:   27 YRSASFATPVADDGAPLPSYLKYKEKFLMPVRDQRCCAACWSFSVADMMADTLNAQTAGAFGKRPLSAQYLLSCSSAHRGCEVGGSPEDVYDLPQLTDAGCPLDADLPYEGKET-PCRPLPPDVLRVRTVPNTAVSLCDDPDRALPGTRAATIRRNVRNMKRALLQYGPIVGTLRVTGDLYAYRGDGIFRGDPASKFYGYHAVEIVGWCDENVNWAEPGFDGAYWIVRSSWGFDWGVPKGMRYGWAYVTMGENCADIESRASVCRVEFPMALEEVRRRTPTSAARYESYEHYVDDPERENFIGGL 330          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A836CER7_9STRA (FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CER7_9STRA)

HSP 1 Score: 307 bits (786), Expect = 5.400e-100
Identity = 148/290 (51.03%), Postives = 193/290 (66.55%), Query Frame = 1
Query:  124 LPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDD-AYWVVRSSWGDNWGAR-GIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAM 984
            LP+Y K+KER+L+PVR+Q  CAACW+ SV DMM+DT+N+ + G +G+  LS QYL+SC   HEGC+ GGSPE  Y+LPQ+TD G PL+ + PY    T  CK +     RVRT+KNT  DLC DP+      R   I  N+  MK+AL+  GPIVGT+RV EDLY Y    IY+  P S+ +GYHA+E++GW  E VN  EPGFD  A+W+ RSSWG  WG   G+  GFA+++MG N  DIESRASVC V  P+ +      T +  +RY SYT Y +DPER +F+ A+
Sbjct:   35 LPSYLKYKERWLMPVRDQGPCAACWSYSVVDMMADTLNVWTAGGYGKRPLSAQYLLSCSKAHEGCDVGGSPEAVYNLPQMTDVGCPLDADLPYEGKVTE-CKQLPPDAFRVRTIKNTAVDLCDDPSLALPGTRGATIKRNVENMKRALMAYGPIVGTIRVTEDLYAYKADGIYRGDPTSKLVGYHAIEIIGWCCEAVNIREPGFDSPAFWICRSSWGVYWGVPPGVSSGFAFIEMGANVCDIESRASVCRVNFPKELAAIAKKTPLTEVRYESYTDYADDPERQNFIDAV 323          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A836CC90_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC90_9STRA)

HSP 1 Score: 276 bits (707), Expect = 1.050e-87
Identity = 146/314 (46.50%), Postives = 190/314 (60.51%), Query Frame = 1
Query:   85 RIYTAVAAAAPDDLPTYFKWKERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSG-HEGCNTGGSPEGTYDLPQLTD--AGIPLEEEFPYVATDTAPCKAITE----GVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALL-NGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGA-RGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHA 999
            RI     A+A + LP+YFK+ E  L P R+Q GCA+CWA +VCDM +D +NLR+ G WG   LSPQYL+SC  G  + C  GG PE   + P  T    GIPLE E PY A D  PC A +     G +RVR    +   LC DP+     +R   +  N+  MK+A++ +GP+VGTLRV EDLY Y    IY+  P S  +GYHAV +VGW +  VN AEPGFD AYWV++SSWG +WG   G+R G+AYV MG N A++ESRASV    +P+   +A          Y SY  Y  DP+R +F+GA+ + HA
Sbjct:   38 RIPRLFGASASEPLPSYFKYHEALLNPPRDQLGCASCWAFAVCDMAADALNLRTEGAWGVRPLSPQYLLSCAPGLTQSCEEGGIPEEALESPAATSEGGGIPLESEVPYRA-DEGPCAASSARPSPGGVRVRIAPGSSLSLCDDPSLALPGMRGATVKRNVANMKRAIMRHGPVVGTLRVTEDLYDYAASEIYRQDPASAFVGYHAVLIVGWCDARVNSAEPGFDGAYWVIKSSWGQHWGVPEGVRSGYAYVAMGENIAEVESRASVATAVLPDGFAEAEGWQ--KRTAYWSYDDYARDPDRDNFLGAVARAHA 348          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A1W0WRS1_HYPDU (Putative Cathepsin B-like cysteine proteinase 4 n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WRS1_HYPDU)

HSP 1 Score: 102 bits (255), Expect = 1.490e-20
Identity = 90/309 (29.13%), Postives = 135/309 (43.69%), Query Frame = 1
Query:  106 AAAPDDLPTYFKW-KERFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISC----WSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEF-------PY-VATDTAPCKAITEGVLRVRTVKNTGRDL------CIDPATVPENVRQQVIDANIVRMKKALL-NGPIVGTLRVHEDLYKYD---GLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDA-IAATDIDTMRYTSYTQYVEDPE 960
            AA P       +W K   +  +R+Q  C  CWA+S   ++SD I + SG Q     +S     SC     SG + C  GG P   Y    L   G+P   EF       PY V  ++AP    ++             DL       ID       + Q  I A++ +M+  ++ NGPI  TL+V +D   +D   GL      PG++ +G HAV ++GW  ++           YW++ +SWG + G +GI +    ++MG N   IES  S   V+MP +   A    T ID    T     ++DP+
Sbjct:   60 AAIPTAFDARTQWPKCESIKLIRDQGQCGTCWAVSSASVLSDRICIASG-QKTNVLISANQAASCSVPGQSGDDNCEAGGDPANVYKYTSLQ--GLPTGGEFNSNKGCVPYQVGGESAPPLTCSKKCTNTGYTTPLANDLNVVDSYWIDYKKKDVKLSQAEIAASVNKMQTDIMANGPITATLKVWDDFQNWDASDGLCYRAPGPGAKDLGGHAVRIIGWNKDKAG-------TPYWMIANSWGTDVGDKGIYW----LEMGKNAIGIESTISAPIVKMPNNCDGASFCDTPIDLAVLTK----IKDPK 350          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A523WTK5_9BACT (Pept_C1 domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A523WTK5_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 2.840e-20
Identity = 76/241 (31.54%), Postives = 112/241 (46.47%), Query Frame = 1
Query:  124 LPTYFKWKER---FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQ---QVIDANIVRMKKALL-NGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARGI-RYGFAYVKMG 822
            LPT F W +    ++ PVR+Q  C +CWA +    M   I +  G  +    LS Q+++SC + + GC+ GG  +  Y   Q T  G P E+ F Y+ATD  PC +     LR           C D A   E ++     V+  +  ++KK +  NGP+   + V+ DL  Y+      V   +   G HAV +VGW  E             W+V++SWGD+WG  G  R  F   K+G
Sbjct:  103 LPTSFDWSDNNGNWVTPVRDQGYCGSCWAFATVAQMESLIRIFYGNPFLDVDLSEQFIVSCDTSNHGCS-GGRLQNVYQFVQHT--GTPDEDCFLYLATDE-PCYS----PLR-----------CDDWANRVEKIKMWKWAVLRLDTNKLKKVVFENGPVTCFMHVYYDLVFYESGCYEHVD--APWAGGHAVCIVGWTEE-----------GCWIVKNSWGDDWGENGFFRIKFGNCKIG 311          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A660XD16_9BACT (Pept_C1 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A660XD16_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 2.750e-18
Identity = 81/293 (27.65%), Postives = 130/293 (44.37%), Query Frame = 1
Query:  118 DDLPTYFKWKER---FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTDAG-IPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARG--------IRYGF--AYVKMGCNEADIESRASVCEVEMPESVKDAIAATDIDTMRYTSYTQYVED 954
            ++LP++F W++    ++ PV+NQ    +CWA S    +     + +        LS Q+LISC    E    GG   G Y L  + D G +P E  FPY A D+ PC              N   D   +  T P           I  +K+A+   P+  +++V+ D Y Y    +Y+    + + G HAV +VGW + E           YW+V++SWG NWG  G        + +G+   YV  G  E  +    S  E+E+  +V D ++    DT+ +T+ +  V +
Sbjct:   84 ENLPSHFDWRDNNGNWVTPVKNQNPAGSCWAFSAAGQLESWYRITTNDPDTMIDLSEQFLISC--NDEATANGGYFTG-YTLDFILDVGGVPSESCFPYKADDS-PCS-------------NACEDWQSEALTFPGWGYVTGSKPLIDNIKQAVYQHPLSVSMQVYSDFYNYTS-GVYKRVSETNE-GGHAVVIVGWDDAE----------QYWIVKNSWGPNWGEDGYFRITWDDMEFGYNGVYVYNGMTEDALA--ISENEIELDMTVGDVLS----DTITFTNISSDVAE 341          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: A0A8K0AC46_BRALA (CTSB protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0AC46_BRALA)

HSP 1 Score: 93.2 bits (230), Expect = 3.480e-17
Identity = 66/231 (28.57%), Postives = 112/231 (48.48%), Query Frame = 1
Query:  121 DLPTYFKWKERF---LVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQ----LTDAGIPLEEEFPYVATDTAPC-KAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARG 789
            +LP  F  +E++   + P+RNQ  C +CWA +  +++SD   ++S GQ  +  LSPQY++SC     GCN GG     ++  Q    +T+  +P   +   V + ++ C    T+G          G+    +   +  +V+Q  +D         + NGP+     V++D  +Y G  +Y+   G R++G HAV++VGW  E+           +W V +SWG  WG  G
Sbjct:  482 ELPESFDAREQWPNCVEPIRNQGHCGSCWAFAATEVLSDRFCIQSHGQV-KVDLSPQYMVSCDRSDYGCN-GGYLSHAWNFLQTKGTVTNGCMPYASQKGQVPSCSSTCIPGSTDGF---------GKYKARESYRIHNDVKQIQMDI--------MTNGPVETAFTVYKDFMQYSG-GVYR-HEGGRELGGHAVKIVGWGEED--------GVQFWRVANSWGPVWGEEG 683          
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Match: G7WMI4_METH6 (Peptidase C1A, papain, putative n=2 Tax=Methanothrix harundinacea TaxID=301375 RepID=G7WMI4_METH6)

HSP 1 Score: 91.7 bits (226), Expect = 1.260e-16
Identity = 68/248 (27.42%), Postives = 108/248 (43.55%), Query Frame = 1
Query:  127 PTYFKWKER----FLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCWSGHEGCNTGGSPEGTYDLPQLTD----AGIPLEEEFPYVATDTAPCKAITEGVLRVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLN-GPIVGTLRVHEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWVVRSSWGDNWGARGIRYGFAYVKMGCNEADIE 843
            P  F W+      +  P+RNQ  C +CWA +VC  +   + + +G    +  LS Q ++SC        + G   G Y L   +D     G   E  +PY+A+DTAPC+            + + R    D   V +     + DA +  +K+ +   GP+   + V+ D + Y G  IY+ T G+   G H V +VGW  +  N         Y + ++SWG  WG  G      + ++  NE  IE
Sbjct:  140 PNSFDWRNAGGFDWTTPIRNQNPCGSCWAFAVCGALESRMKIAAGNPNLQPDLSEQEILSC--------SPGDCSGWY-LSSTSDWMLCEGTVDESCYPYLASDTAPCRGSCPD-------RESRRYYITDWCWVGDGPGGTINDAPLDALKEEITCCGPVATYMEVYSDFWGYSG-GIYKKTTGATFEGGHFVVIVGWGYDATN-------GWYLICKNSWGTGWGESG------WFRIKWNEVRIE 357          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161654 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8B2_9STRA5.480e-253100.00Putative cysteine protease n=2 Tax=Tribonema minus... [more]
A0A836CH74_9STRA5.350e-13056.41FirrV-1-A48 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835YX55_9STRA2.280e-11155.08Putative cysteine protease n=1 Tax=Tribonema minus... [more]
A0A836CER7_9STRA5.400e-10051.03FirrV-1-A48 n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CC90_9STRA1.050e-8746.50Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A1W0WRS1_HYPDU1.490e-2029.13Putative Cathepsin B-like cysteine proteinase 4 n=... [more]
A0A523WTK5_9BACT2.840e-2031.54Pept_C1 domain-containing protein n=1 Tax=Candidat... [more]
A0A660XD16_9BACT2.750e-1827.65Pept_C1 domain-containing protein n=1 Tax=Candidat... [more]
A0A8K0AC46_BRALA3.480e-1728.57CTSB protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]
G7WMI4_METH61.260e-1627.42Peptidase C1A, papain, putative n=2 Tax=Methanothr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1301282..1302292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161654|e_gw1.18.316.1
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
KEGG koko:K01363
EC3.4.22.1
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0006810,GO:0007155,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016192,GO:0016197,GO:0016787,GO:0017147,GO:0019538,GO:0022610,GO:0023051,GO:0023056,GO:0030111,GO:0030177,GO:0030312,GO:0031012,GO:0033036,GO:0035592,GO:0035593,GO:0036094,GO:0042600,GO:0043170,GO:0043236,GO:0044238,GO:0044421,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050840,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060828,GO:0062023,GO:0065007,GO:0070011,GO:0071692,GO:0071704,GO:0071944,GO:0090263,GO:0097159,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Preferred nameTINAGL1
Descriptionscavenger receptor activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1544@1|root,KOG1544@2759|Eukaryota
Evalue1.05e-50
Seed ortholog2880.D8LPA7
Hectar predicted targeting categorysignal peptide
TranscriptId161976
TrackFilteredModels1
ProteinId161654
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161654gene_1516Tribonema minus UTEX_B_3156 geneContig_18 1301282..1302292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1516_1exon_1516_1Tribonema minus UTEX_B_3156 exonContig_18 1301282..1302292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1516CDS_1516Tribonema minus UTEX_B_3156 CDSContig_18 1301282..1302292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161654Trimin1|161654|e_gw1.18.316.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1301282..1302292 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1516 ID=mRNA_1516|Name=jgi.p|Trimin1|161654|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_18:1301282..1302292- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCGAGAACCATCGCTGTCGCAGCAGTAGTAGGTGTATGCTTAGG
GGTGCTGCTTACGCTGTTGTACATCAACAGACGCCGCATCTACACAGCAG
TGGCGGCAGCAGCCCCAGACGACCTGCCTACCTATTTCAAGTGGAAGGAA
CGGTTTCTGGTGCCAGTGAGAAACCAGAAGGGCTGTGCTGCATGCTGGGC
GCTCAGTGTATGTGACATGATGAGCGACACTATTAACCTGCGCAGCGGCG
GGCAGTGGGGCAGAAATCATCTCAGTCCGCAGTACCTCATATCATGCTGG
AGCGGTCATGAAGGATGTAACACCGGCGGCTCACCAGAGGGGACCTACGA
CTTGCCCCAACTCACTGATGCAGGCATACCTTTAGAGGAAGAGTTTCCCT
ACGTTGCAACAGACACTGCACCCTGCAAAGCCATCACAGAGGGTGTTTTG
AGAGTGCGCACCGTCAAAAACACTGGACGCGACTTGTGTATCGATCCTGC
CACAGTACCTGAGAACGTGAGACAGCAGGTGATAGATGCCAACATTGTCA
GGATGAAAAAAGCCCTGCTGAACGGGCCTATAGTGGGCACGCTGCGCGTT
CATGAAGACCTGTACAAGTATGACGGCCTGGCCATATACCAAGTGACACC
TGGCTCTAGGCAAATTGGTTATCACGCTGTGGAGGTGGTGGGATGGGCAA
ATGAGGAGGTAAACTTTGCTGAACCTGGCTTTGACGACGCGTATTGGGTT
GTCAGGTCCAGCTGGGGCGACAACTGGGGAGCTCGCGGCATACGTTACGG
GTTCGCATATGTCAAAATGGGCTGCAATGAGGCTGACATCGAAAGTCGCG
CTTCAGTGTGCGAAGTGGAAATGCCAGAGAGCGTTAAGGATGCAATAGCT
GCAACTGACATTGACACCATGAGATACACCAGCTATACTCAATATGTGGA
GGACCCAGAAAGAAGTCACTTTGTGGGGGCAATGGTCAAGAACCATGCAC
ATGCAACGTAG
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protein sequence of jgi.p|Trimin1|161654

>Trimin1|161654|e_gw1.18.316.1 ID=Trimin1|161654|e_gw1.18.316.1|Name=jgi.p|Trimin1|161654|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=337bp
MGARTIAVAAVVGVCLGVLLTLLYINRRRIYTAVAAAAPDDLPTYFKWKE
RFLVPVRNQKGCAACWALSVCDMMSDTINLRSGGQWGRNHLSPQYLISCW
SGHEGCNTGGSPEGTYDLPQLTDAGIPLEEEFPYVATDTAPCKAITEGVL
RVRTVKNTGRDLCIDPATVPENVRQQVIDANIVRMKKALLNGPIVGTLRV
HEDLYKYDGLAIYQVTPGSRQIGYHAVEVVGWANEEVNFAEPGFDDAYWV
VRSSWGDNWGARGIRYGFAYVKMGCNEADIESRASVCEVEMPESVKDAIA
ATDIDTMRYTSYTQYVEDPERSHFVGAMVKNHAHAT*
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mRNA from alignment at Contig_18:1301282..1302292-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1516 ID=mRNA_1516|Name=jgi.p|Trimin1|161654|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_18:1301282..1302292- (Tribonema minus UTEX_B_3156 )
ATGGGGGCGAGAACCATCGCTGTCGCAGCAGTAGTAGGTGTATGCTTAGG GGTGCTGCTTACGCTGTTGTACATCAACAGACGCCGCATCTACACAGCAG TGGCGGCAGCAGCCCCAGACGACCTGCCTACCTATTTCAAGTGGAAGGAA CGGTTTCTGGTGCCAGTGAGAAACCAGAAGGGCTGTGCTGCATGCTGGGC GCTCAGTGTATGTGACATGATGAGCGACACTATTAACCTGCGCAGCGGCG GGCAGTGGGGCAGAAATCATCTCAGTCCGCAGTACCTCATATCATGCTGG AGCGGTCATGAAGGATGTAACACCGGCGGCTCACCAGAGGGGACCTACGA CTTGCCCCAACTCACTGATGCAGGCATACCTTTAGAGGAAGAGTTTCCCT ACGTTGCAACAGACACTGCACCCTGCAAAGCCATCACAGAGGGTGTTTTG AGAGTGCGCACCGTCAAAAACACTGGACGCGACTTGTGTATCGATCCTGC CACAGTACCTGAGAACGTGAGACAGCAGGTGATAGATGCCAACATTGTCA GGATGAAAAAAGCCCTGCTGAACGGGCCTATAGTGGGCACGCTGCGCGTT CATGAAGACCTGTACAAGTATGACGGCCTGGCCATATACCAAGTGACACC TGGCTCTAGGCAAATTGGTTATCACGCTGTGGAGGTGGTGGGATGGGCAA ATGAGGAGGTAAACTTTGCTGAACCTGGCTTTGACGACGCGTATTGGGTT GTCAGGTCCAGCTGGGGCGACAACTGGGGAGCTCGCGGCATACGTTACGG GTTCGCATATGTCAAAATGGGCTGCAATGAGGCTGACATCGAAAGTCGCG CTTCAGTGTGCGAAGTGGAAATGCCAGAGAGCGTTAAGGATGCAATAGCT GCAACTGACATTGACACCATGAGATACACCAGCTATACTCAATATGTGGA GGACCCAGAAAGAAGTCACTTTGTGGGGGCAATGGTCAAGAACCATGCAC ATGCAACGTAG
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Coding sequence (CDS) from alignment at Contig_18:1301282..1302292-

>mRNA_1516 ID=mRNA_1516|Name=jgi.p|Trimin1|161654|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1011bp|location=Sequence derived from alignment at Contig_18:1301282..1302292- (Tribonema minus UTEX_B_3156 )
ATGGGGGCGAGAACCATCGCTGTCGCAGCAGTAGTAGGTGTATGCTTAGG
GGTGCTGCTTACGCTGTTGTACATCAACAGACGCCGCATCTACACAGCAG
TGGCGGCAGCAGCCCCAGACGACCTGCCTACCTATTTCAAGTGGAAGGAA
CGGTTTCTGGTGCCAGTGAGAAACCAGAAGGGCTGTGCTGCATGCTGGGC
GCTCAGTGTATGTGACATGATGAGCGACACTATTAACCTGCGCAGCGGCG
GGCAGTGGGGCAGAAATCATCTCAGTCCGCAGTACCTCATATCATGCTGG
AGCGGTCATGAAGGATGTAACACCGGCGGCTCACCAGAGGGGACCTACGA
CTTGCCCCAACTCACTGATGCAGGCATACCTTTAGAGGAAGAGTTTCCCT
ACGTTGCAACAGACACTGCACCCTGCAAAGCCATCACAGAGGGTGTTTTG
AGAGTGCGCACCGTCAAAAACACTGGACGCGACTTGTGTATCGATCCTGC
CACAGTACCTGAGAACGTGAGACAGCAGGTGATAGATGCCAACATTGTCA
GGATGAAAAAAGCCCTGCTGAACGGGCCTATAGTGGGCACGCTGCGCGTT
CATGAAGACCTGTACAAGTATGACGGCCTGGCCATATACCAAGTGACACC
TGGCTCTAGGCAAATTGGTTATCACGCTGTGGAGGTGGTGGGATGGGCAA
ATGAGGAGGTAAACTTTGCTGAACCTGGCTTTGACGACGCGTATTGGGTT
GTCAGGTCCAGCTGGGGCGACAACTGGGGAGCTCGCGGCATACGTTACGG
GTTCGCATATGTCAAAATGGGCTGCAATGAGGCTGACATCGAAAGTCGCG
CTTCAGTGTGCGAAGTGGAAATGCCAGAGAGCGTTAAGGATGCAATAGCT
GCAACTGACATTGACACCATGAGATACACCAGCTATACTCAATATGTGGA
GGACCCAGAAAGAAGTCACTTTGTGGGGGCAATGGTCAAGAACCATGCAC
ATGCAACGTAG
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