mRNA_15151 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177420
Unique NamemRNA_15151
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177420 vs. uniprot
Match: A0A835Z9I8_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I8_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.140e-65
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1 
Query:    1 MRQRISECPAVVHCRSEDGTTALHHAIARDNQEAAETLLANDASARATTNYGIAPLHLAAMRGSADLVTRLAFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQNVDFARRIIERATSMIRFARNLEGRSPSDIAFASSNVLMHNVFSAAQTADXXXXXXXXXXXXSFE 681
            MRQRISECPAVVHCRSEDGTTALHHAIARDNQEAAETLLANDASARATTNYGIAPLHLAAMRGSADLVTRLAFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQNVDFARRIIERATSMIRFARNLEGRSPSDIAFASSNVLMHNVFSAAQTADXXXXXXXXXXXXSFE
Sbjct:    1 MRQRISECPAVVHCRSEDGTTALHHAIARDNQEAAETLLANDASARATTNYGIAPLHLAAMRGSADLVTRLAFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQNVDFARRIIERATSMIRFARNLEGRSPSDIAFASSNVLMHNVFSAAQTADXXXXXXXXXXXXSFE 227
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BLAST of jgi.p|Trimin1|177420 vs. uniprot
Match: A0A835Z4V3_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.330e-12
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:   43 RSEDGTTALHHAIARDNQEAAETLLANDASARATTNYGI 159
            RSEDGTTALHHAIARD+QEAAETLLAN+ASARA TNYGI
Sbjct:    1 RSEDGTTALHHAIARDDQEAAETLLANEASARAATNYGI 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177420 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z9I8_9STRA1.140e-65100.00Ankyrin repeat-containing domain protein n=2 Tax=T... [more]
A0A835Z4V3_9STRA2.330e-1292.31Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_151contigContig_151:75769..76452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177420|e_gw1.151.18.1
Hectar predicted targeting categoryother localisation
TranscriptId177742
TrackFilteredModels1
ProteinId177420
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177420gene_15151Tribonema minus UTEX_B_3156 geneContig_151 75769..76452 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15151_1exon_15151_1Tribonema minus UTEX_B_3156 exonContig_151 75769..76452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15151CDS_15151Tribonema minus UTEX_B_3156 CDSContig_151 75769..76452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177420Trimin1|177420|e_gw1.151.18.1Tribonema minus UTEX_B_3156 polypeptideContig_151 75769..76452 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15151 ID=mRNA_15151|Name=jgi.p|Trimin1|177420|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=684bp|location=Sequence derived from alignment at Contig_151:75769..76452+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAAAGGATCTCGGAGTGCCCCGCCGTCGTCCATTGCCGTTCCGA
GGACGGCACCACCGCCCTTCATCACGCCATCGCGCGCGACAACCAAGAAG
CGGCTGAGACGTTGCTCGCCAACGATGCGTCTGCGAGAGCGACGACCAAC
TACGGAATCGCGCCGCTTCATCTAGCAGCCATGCGCGGAAGCGCGGACCT
AGTGACCAGACTCGCGTTTCAAGGAGGTTTCATCGGTGCCAGAGACCCAT
CCGGCAACACACCTCTGCACTACGCGATCCGGAACATGGACGCCATCATG
ACCGTCAAGCTCATCGCTGGATCTGCGTCCGTCGACGTCCCTAACCTGAA
GGGCGAGACGCCACTACATGTGACTGCGCGCCACGGTTCGCCCGTCATGA
ATGCCGTAGTCATCGGAACGTCACGTCACGTCGACAAGACCGACCACCAG
GGTAACAATGCCCTGCACGTCGCAGCGCGGTACCAGAACGTAGACTTTGC
ACGTCGCATCATCGAACGGGCTACGTCCATGATACGGTTCGCAAGGAACT
TGGAGGGAAGATCGCCCTCGGATATCGCCTTCGCTTCCAGTAACGTGCTC
ATGCACAATGTGTTCTCCGCTGCACAGACAGCGGACACGATGGACGACAC
CGATGACGATGATGATGAGGACAGCTTCGAATGA
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protein sequence of jgi.p|Trimin1|177420

>Trimin1|177420|e_gw1.151.18.1 ID=Trimin1|177420|e_gw1.151.18.1|Name=jgi.p|Trimin1|177420|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=228bp
MRQRISECPAVVHCRSEDGTTALHHAIARDNQEAAETLLANDASARATTN
YGIAPLHLAAMRGSADLVTRLAFQGGFIGARDPSGNTPLHYAIRNMDAIM
TVKLIAGSASVDVPNLKGETPLHVTARHGSPVMNAVVIGTSRHVDKTDHQ
GNNALHVAARYQNVDFARRIIERATSMIRFARNLEGRSPSDIAFASSNVL
MHNVFSAAQTADTMDDTDDDDDEDSFE*
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mRNA from alignment at Contig_151:75769..76452+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15151 ID=mRNA_15151|Name=jgi.p|Trimin1|177420|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=684bp|location=Sequence derived from alignment at Contig_151:75769..76452+ (Tribonema minus UTEX_B_3156 )
ATGCGCCAAAGGATCTCGGAGTGCCCCGCCGTCGTCCATTGCCGTTCCGA
GGACGGCACCACCGCCCTTCATCACGCCATCGCGCGCGACAACCAAGAAG
CGGCTGAGACGTTGCTCGCCAACGATGCGTCTGCGAGAGCGACGACCAAC
TACGGAATCGCGCCGCTTCATCTAGCAGCCATGCGCGGAAGCGCGGACCT
AGTGACCAGACTCGCGTTTCAAGGAGGTTTCATCGGTGCCAGAGACCCAT
CCGGCAACACACCTCTGCACTACGCGATCCGGAACATGGACGCCATCATG
ACCGTCAAGCTCATCGCTGGATCTGCGTCCGTCGACGTCCCTAACCTGAA
GGGCGAGACGCCACTACATGTGACTGCGCGCCACGGTTCGCCCGTCATGA
ATGCCGTAGTCATCGGAACGTCACGTCACGTCGACAAGACCGACCACCAG
GGTAACAATGCCCTGCACGTCGCAGCGCGGTACCAGAACGTAGACTTTGC
ACGTCGCATCATCGAACGGGCTACGTCCATGATACGGTTCGCAAGGAACT
TGGAGGGAAGATCGCCCTCGGATATCGCCTTCGCTTCCAGTAACGTGCTC
ATGCACAATGTGTTCTCCGCTGCACAGACAGCGGACACGATGGACGACAC
CGATGACGATGATGATGAGGACAGCTTCGAATGA
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Coding sequence (CDS) from alignment at Contig_151:75769..76452+

>mRNA_15151 ID=mRNA_15151|Name=jgi.p|Trimin1|177420|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=684bp|location=Sequence derived from alignment at Contig_151:75769..76452+ (Tribonema minus UTEX_B_3156 )
ATGCGCCAAAGGATCTCGGAGTGCCCCGCCGTCGTCCATTGCCGTTCCGA
GGACGGCACCACCGCCCTTCATCACGCCATCGCGCGCGACAACCAAGAAG
CGGCTGAGACGTTGCTCGCCAACGATGCGTCTGCGAGAGCGACGACCAAC
TACGGAATCGCGCCGCTTCATCTAGCAGCCATGCGCGGAAGCGCGGACCT
AGTGACCAGACTCGCGTTTCAAGGAGGTTTCATCGGTGCCAGAGACCCAT
CCGGCAACACACCTCTGCACTACGCGATCCGGAACATGGACGCCATCATG
ACCGTCAAGCTCATCGCTGGATCTGCGTCCGTCGACGTCCCTAACCTGAA
GGGCGAGACGCCACTACATGTGACTGCGCGCCACGGTTCGCCCGTCATGA
ATGCCGTAGTCATCGGAACGTCACGTCACGTCGACAAGACCGACCACCAG
GGTAACAATGCCCTGCACGTCGCAGCGCGGTACCAGAACGTAGACTTTGC
ACGTCGCATCATCGAACGGGCTACGTCCATGATACGGTTCGCAAGGAACT
TGGAGGGAAGATCGCCCTCGGATATCGCCTTCGCTTCCAGTAACGTGCTC
ATGCACAATGTGTTCTCCGCTGCACAGACAGCGGACACGATGGACGACAC
CGATGACGATGATGATGAGGACAGCTTCGAATGA
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