mRNA_15063 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A836CN72_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN72_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.430e-50 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILVGTGIVYSALT 240 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILVGTGIVYSALT Sbjct: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILVGTGIVYSALT 80
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7S1TTG4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTG4_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 5.190e-12 Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILVGTGIV 225 R ++ SKR+G IKEYL+E+ D RG EQW F DWL K+ +P K+ F S DNPV+ AG L+ G+V Sbjct: 54 RAEVAASKRKGEIKEYLEEIRDDDT-RGAEQWLFNDWLEPAKKDAAIPFLPKKKFN-SGDNPVLAAGALILLGVV 126
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7R9U9Y4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9Y4_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.940e-9 Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVA 198 R+ +S+SKR+G IKEYL+E+ D DR +EQW DWL ++++ VP K F S DNPV+ A Sbjct: 125 RLEVSKSKRKGEIKEYLEEIRGDD-DRKVEQWLLNDWLEPKEKEAAVPFLPKTKFN-SGDNPVIAA 188
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7S3NQW6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQW6_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.420e-8 Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDNPVVVAGILV 210 R+ LSRSK+ G +KEYLD+LE + +R E+W DW+ KRK + S DNP++ AG L+ Sbjct: 68 RLELSRSKKAGEVKEYLDKLETNE-ERQFEKWLLNDWINPNKRKEPALPFLPDGKFNSGDNPILAAGALI 136
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A1Z5J6K2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6K2_FISSO) HSP 1 Score: 55.1 bits (131), Expect = 2.330e-7 Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAA----------DRGLEQWFFTDWLRQRKRKGGVPSGEKEPFL 168 R L+ SKRRG +K+YLDEL + A R E+W FTDWL QR++K S +KEP L Sbjct: 82 RTKLALSKRRGAVKQYLDELSAEEAIVRSEGRSSSSRSFERWLFTDWLVQREKKLTGQSIKKEPAL 147
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7S3CFU0_9CHLO (Hypothetical protein n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CFU0_9CHLO) HSP 1 Score: 55.1 bits (131), Expect = 4.120e-7 Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGEKEPF 165 R AL++SKRRG + YLDELE D + R LE+WF+TDW ++R+ K + + P Sbjct: 131 RRALAKSKRRGSLSSYLDELEGDDS-RALERWFYTDWRKKRQEKAERDARRRAPI 184
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A0D2MJ50_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MJ50_9CHLO) HSP 1 Score: 53.9 bits (128), Expect = 4.690e-7 Identity = 23/44 (52.27%), Postives = 35/44 (79.55%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRK 132 R L++ KR G ++ YL+E++ D+ DRGLE+WF+TDWLRQ +R+ Sbjct: 26 RRTLAKEKRAGAVRGYLEEIQNDS-DRGLERWFYTDWLRQLERR 68
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A8J4BPH2_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BPH2_9CHLO) HSP 1 Score: 54.7 bits (130), Expect = 5.840e-7 Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVD--AADRGLEQWFFTDWLRQRKRKGGVPSGEKEPFLLSTDN 183 R AL RSKR G + YL ELE +RGLE+WF+TDWLRQR+ + ++ P + N Sbjct: 120 RAALGRSKRLGPLNTYLQELERPDTVQNRGLERWFYTDWLRQREERRRQRDQQRTPTAEDSSN 182
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A7S4GI34_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GI34_9EUGL) HSP 1 Score: 50.4 bits (119), Expect = 2.450e-5 Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQR 123 R AL+ KRRG +KEYL+E+ D + RGLE+WF+ DWL+++ Sbjct: 221 RRALASDKRRGEVKEYLEEIAGDES-RGLERWFYDDWLKRK 260
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Match: A0A383V710_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V710_TETOB) HSP 1 Score: 49.7 bits (117), Expect = 3.940e-5 Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 Query: 1 RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRK 132 R L++ KR G +KEYL EL+ + D+G+E+WF+TDWL+Q +R+ Sbjct: 97 RRTLAKEKRSGPLKEYLVELQENP-DKGVERWFYTDWLQQLQRR 139 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132068 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15063 ID=mRNA_15063|Name=jgi.p|Trimin1|132068|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_114:206834..207073- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGCGTGGCGCTCTCGCGCAGCAAGCGGCGCGGCCGCATCAAGGAGTACCTback to top protein sequence of jgi.p|Trimin1|132068 >Trimin1|132068|gw1.114.11.1 ID=Trimin1|132068|gw1.114.11.1|Name=jgi.p|Trimin1|132068|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=80bp RVALSRSKRRGRIKEYLDELEVDAADRGLEQWFFTDWLRQRKRKGGVPSGback to top mRNA from alignment at Contig_114:206834..207073- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15063 ID=mRNA_15063|Name=jgi.p|Trimin1|132068|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_114:206834..207073- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_114:206834..207073- >mRNA_15063 ID=mRNA_15063|Name=jgi.p|Trimin1|132068|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=240bp|location=Sequence derived from alignment at Contig_114:206834..207073- (Tribonema minus UTEX_B_3156 )back to top |