mRNA_15058 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352283
Unique NamemRNA_15058
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A835ZHU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHU1_9STRA)

HSP 1 Score: 223 bits (568), Expect = 7.070e-73
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
Query:   34 MRRGFGAVSMALSLCLACLLAAATDAARTSNTSMVNCSPCMQKVLRIRGGVKKPGQGKASSKGKKGTKAAKKVKITPVSYVKAFFASMLDPSYDEQFIEKPVHSASGAASLKKGKKQA 387
            MRRGFGAVSMALSLCLACLLAAATDAARTSNTSMVNCSPCMQKVLRIRGGVKKPGQGKASSKGKKGTKAAKKVKITPVSYVKAFFASMLDPSYDEQFIEKPVHSASGAASLKKGKKQA
Sbjct:    1 MRRGFGAVSMALSLCLACLLAAATDAARTSNTSMVNCSPCMQKVLRIRGGVKKPGQGKASSKGKKGTKAAKKVKITPVSYVKAFFASMLDPSYDEQFIEKPVHSASGAASLKKGKKQA 118          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA)

HSP 1 Score: 610 bits (1574), Expect = 1.860e-218
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 1
Query:    1 MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA 1125
            MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA
Sbjct:    1 MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA 375          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.090e-28
Identity = 99/265 (37.36%), Postives = 135/265 (50.94%), Query Frame = 1
Query:  130 GAGRASTPVRVS---GSRAVTPQRAVY--AAPI----AAAQEGRPS-QHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAP---ALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQ------------AGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGG 849
            GAGRA TP R++       + P   ++  AAP+    A  +EG    Q  GRR+QRRW NDN  G+ K + G       G A+       HL++  +WRSSLGDLV+D   A +R + R G  P P     + GSG + + G  WEDAEERF  + +RLRD+V ++L    L  ++  +E  L  F   + +    P  L  AL +P +++            A    G  L V L  SPFHRLLLHA CQY  L SKS+  + G
Sbjct:   98 GAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAH-EEGEAE-------HLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRG 354          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL)

HSP 1 Score: 99.0 bits (245), Expect = 1.610e-19
Identity = 78/267 (29.21%), Postives = 132/267 (49.44%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH-WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEA-------DRLRRAQLSDGH 1020
            G R+Q+RW ND+ FG +KA S             +  LM+H++L+V WRS+   L   E +  L+ A R+G      + +GS   ++R    W DAEE F RI +R R ++ +S +      ++ AVE  +L+F+  R LP      D L+  L  P++L    +   RL + L DS FHRL++H+ CQ++G+ S+++A +     + V  +                   +S+C F+  TR+ +  +       D  + ++ SDG+
Sbjct:  111 GVRKQQRWFNDHHFG-NKAAS-----------TRLEDLMEHMTLNVEWRSNFQKLAEPE-NKDLQVAFRKGRVQ---VQNGSNQPKWRRKDDWNDAEEMFTRIDRRARTLLMRSFNSFV--DFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNENDVRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRRFNTKIMVLKS-------PKKKFSQEQLEKISLCEFIRETRLGRHSSAVEDPLEDLTKSSECSDGY 352          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A024GEX0_9STRA (R3H domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GEX0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.160e-15
Identity = 73/267 (27.34%), Postives = 126/267 (47.19%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQG-GVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADR-------LRRAQLSDGH 1020
            G+R Q+RWAND      + +            + +  LMQHL + V+WRS+   L  D     L+ A  +       +S  +  +  +  +W +AE  F R+ +R R ++++S+   +  +++ A+E T+L+F+  R  P        L + L +PL++         L ++L +SPFHRLL+HA CQ++GL SK++  Q    KT+ V                      +S+C F+  TRV   E ++        R ++ SDG+
Sbjct:   67 GKRNQKRWANDYHIENSEMLG-----------NNVEELMQHLHIQVNWRSNFQQLAKDRA---LQDAFLEAKVHPKPIS--TNCRNKKTGYWNEAEYMFRRMDRRARALLSKSI--ISFGSFLEAMEHTILHFVKWREAPSDLELMPALRKMLISPLEITESAFSVRSLRLSLPNSPFHRLLVHALCQFYGLQSKTEQNQEKSFKTIVV-------LQPQTEKMEKLNCTAISLCRFLLETRVPHHENNKEDSMEVSTRTSECSDGY 308          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: W4H8G5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8G5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.130e-14
Identity = 70/216 (32.41%), Postives = 107/216 (49.54%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFIT-ARALP-----PTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831
            G+R Q R+ ND+ FG   A +             +  LM+H+S+ V W+S+  +L   E +  L  A R    P  A S+ S +  +R      W +A++ F R+ KR R ++  S    +++ YV AVE  +++F+   + LP     PT  + LA  +     TP+   +   GG           L V L +SPFHRLL+HA CQ++GLLSKS
Sbjct:  100 GKRSQNRYFNDHHFGNRAATA------------TLDELMEHMSVSVEWKSNFEELARPE-NQELAEAFRSVKEPTHARSNASQNGTHRAKPSVDWTEADDMFTRVDKRARSILLASF--VSMQEYVHAVEQVVVHFVQWNQVLPSEDFSPTLVNWLAAPITIDVVTPMVRDSKAAGGRAKPAKHDETVLVVPLLESPFHRLLIHATCQFYGLLSKS 300          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: W4H7Z2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7Z2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.910e-13
Identity = 67/210 (31.90%), Postives = 103/210 (49.05%), Query Frame = 1
Query:  268 RWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFIT-ARALP-----PTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831
            R+ ND+ FG   A +             +  LM+H+S+ V W+S+  +L   E +  L  A R    P  A S+ S +  +R      W +A++ F R+ KR R ++  S    +++ YV AVE  +++F+   + LP     PT  + LA  +     TP+   +   GG           L V L +SPFHRLL+HA CQ++GLLSKS
Sbjct:    5 RYFNDHHFGNRAATA------------TLDELMEHMSVSVEWKSNFEELARPE-NQELAEAFRSVKEPTHARSNASQNGTHRAKPSVDWTEADDMFTRVDKRARSILLASF--VSMQEYVHAVEQVVVHFVQWNQVLPSEDFSPTLVNWLAAPITIDVVTPMVRDSKAAGGRAKPAKHDETVLVVPLLESPFHRLLIHATCQFYGLLSKS 199          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A6G0W807_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W807_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.100e-13
Identity = 62/214 (28.97%), Postives = 99/214 (46.26%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH---WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQA-------GPKGGARLGVALH----------DSPFHRLLLHAACQYHGLLSKS 831
            G+R Q R+ ND+ FG   A +             +  LM+H+S+ V W+S+  +++A   +  L  A R    P  A S+   +  +RG     W +AE  F R+ KR R ++  +    +++ YV AVE  +++F+     P      L   L  P+ ++              R+  + H          DSPFHRLL+HA CQ++GL SKS
Sbjct:   99 GKRSQNRYFNDHHFGNRAATA------------TLEELMEHMSVSVEWKSNF-EILARPENQELAEAFRNVKEPTHARSNSKQNGTHRGKRNDDWTEAENMFTRVDKRARSILLATF--TSMQEYVEAVELVVVHFVQWNEAPSDISPMLLNWLAAPMTVETLTPMVREAKAASTRMKPSKHKETVLVLPLADSPFHRLLIHATCQFYGLHSKS 297          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A067D2K7_SAPPC (R3H domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2K7_SAPPC)

HSP 1 Score: 81.3 bits (199), Expect = 2.610e-13
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH---WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP-DP-LAEALRTPLQ-LQAGP------KGGARLGVALH----------DSPFHRLLLHAACQYHGLLSKS 831
            GRR Q R+ ND+ FG   A +            ++  LM+H+++ V W+S+   L   E +A +  A R    P+ A S+ + +Q +R      W +A++ F RI +R R V+  S     +  Y+ A+E  +++F+    +  T   DP LA  L  P++ L+  P       GG+R   A H          +S +HRLL+HA CQ++GL SKS
Sbjct:   97 GRRTQNRYFNDHHFGNRAATA------------SLDELMEHMAISVDWKSNFQKLAQPENEA-IADAFRSVKEPSHARSNSNQNQTHRARRHDAWHEADDMFTRIDRRARSVLAASFDA--MHIYIQAIEDVIVHFVKWNEVMSTIELDPVLANMLSGPMRVLETTPVVRETKAGGSRTRPAKHKDSVLVLPLVESSYHRLLIHAVCQFYGLDSKS 297          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: F0WIQ4_9STRA (Uncharacterized protein AlNc14C113G6447 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIQ4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.890e-13
Identity = 61/202 (30.20%), Postives = 102/202 (50.50%), Query Frame = 1
Query:  247 RGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQG 846
            +G+R Q RW NDN  G  + +            + M  +MQHL L V+WRS+  +L  D     L+ A  +       LS  S +++    +W +AE  F+R+ +R R ++++SL   + + ++ A E   L+FI  +  P        L + L +PL+          L + L +S FHRL++HA CQ++GL SK++  +G
Sbjct:   70 KGKRDQIRWMNDNHVGNPETMG-----------NNMEEMMQHLHLQVNWRSNFQELAKDHT---LQNAFLEAKVHPRPLSTKSRNKKI--GYWREAEYMFSRMDRRARALLSKSL--LSFKPFLEATEHATLHFIKWQEAPSDLELMPALCKMLVSPLETTESALSVKCLRIPLVNSSFHRLMVHALCQFYGLHSKTEQIEG 253          
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A024UVM4_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVM4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.490e-12
Identity = 64/216 (29.63%), Postives = 104/216 (48.15%), Query Frame = 1
Query:  250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFI------TARALPPTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831
            G+R Q R+ ND+ FG   A +             +  LM+H+++ V W+S+  +L   E +  L  A R    P  A ++   +  +R    T W +A++ F R+ KR R ++  S    +++ ++ AVE+ +++F+      +A  L P     LA  +     TP+   A   G            L V L +SPFHRLL+HA CQ++GL SKS
Sbjct:   98 GKRSQNRYFNDHHFGNRAATA------------TLEELMEHMNVSVDWKSNFEELARPE-NQELAEAFRNVKEPTHARTNAKQNGTHRAKPATDWTEADDMFTRVDKRARSILLSSF--VSMQEFIEAVESFVVHFVQWNEVQSANVLSPRLTSWLAAPMTIDIVTPMVRDAKAAGTRSKPAKHSETVLVVPLLESPFHRLLIHATCQFYGLNSKS 298          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZHU1_9STRA7.070e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|352283 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835ZHM7_9STRA1.860e-218100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FP96_ECTSI1.090e-2837.36R3H domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8K1FEI2_PYTOL1.610e-1929.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GEX0_9STRA9.160e-1527.34R3H domain-containing protein n=2 Tax=Albugo candi... [more]
W4H8G5_9STRA1.130e-1432.41Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
W4H7Z2_9STRA1.910e-1331.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0W807_9STRA2.100e-1328.97R3H-assoc domain-containing protein n=1 Tax=Aphano... [more]
A0A067D2K7_SAPPC2.610e-1331.02R3H domain-containing protein n=2 Tax=Saprolegnia ... [more]
F0WIQ4_9STRA6.890e-1330.20Uncharacterized protein AlNc14C113G6447 n=1 Tax=Al... [more]
A0A024UVM4_9STRA1.490e-1229.63R3H-assoc domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:155957..157442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352283|estExt_Genemark1.C_Ctg_1140023
Hectar predicted targeting categorysignal peptide
TranscriptId352605
TrackFilteredModels1
ProteinId352283
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352283gene_15058Tribonema minus UTEX_B_3156 geneContig_114 155957..157442 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15058_1exon_15058_1Tribonema minus UTEX_B_3156 exonContig_114 155957..156175 +
exon_15058_2exon_15058_2Tribonema minus UTEX_B_3156 exonContig_114 157179..157442 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15058UTR5_15058Tribonema minus UTEX_B_3156 five_prime_UTRContig_114 155957..155989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15058CDS_15058Tribonema minus UTEX_B_3156 CDSContig_114 155990..156175 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15058UTR3_15058Tribonema minus UTEX_B_3156 three_prime_UTRContig_114 157350..157442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352283Trimin1|352283|estExt_Genemark1.C_Ctg_1140023Tribonema minus UTEX_B_3156 polypeptideContig_114 155990..157349 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15058 ID=mRNA_15058|Name=jgi.p|Trimin1|352283|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_114:155957..157442+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGGGAGGAAAAGCCTAAACAGCGCGTGCAGTCATGCGGCGAGGCTTCGG
GGCGGTGAGCATGGCGCTCTCCCTGTGCCTGGCCTGCCTGCTGGCCGCTG
CTACTGATGCCGCGCGCACCAGCAACACCAGTATGGTGAACTGCTCTCCC
TGCATGCAGAAGGTGCTGCGGATAAGAGGTGGGGTCAAGAAGCCGGGGCA
GGGCAAGGCGTCCAGCAAGGGCAAGAAGGGGACGAAGGCCGCCAAGAAAG
TGAAGATCACGCCCGTTTCATACGTAAAGGCGTTCTTCGCCAGCATGCTG
GACCCCTCTTACGACGAGCAGTTCATCGAGAAGCCCGTGCACTCCGCGAG
CGGTGCTGCAAGCCTTAAGAAGGGCAAGAAGCAGGCATAGCGGCGCTGCG
CGCTGCGCCGACCGTCCGCTGCGTACGCCTGCATTTTCCCCGTCGACAAA
TAGAATAATAAATACATGGACGCGTTGCCTTCA
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protein sequence of jgi.p|Trimin1|352283

>Trimin1|352283|estExt_Genemark1.C_Ctg_1140023 ID=Trimin1|352283|estExt_Genemark1.C_Ctg_1140023|Name=jgi.p|Trimin1|352283|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
MRRGFGAVSMALSLCLACLLAAATDAARTSNTSMVNCSPCMQKVLRIRGG
VKKPGQGKASSKGKKGTKAAKKVKITPVSYVKAFFASMLDPSYDEQFIEK
PVHSASGAASLKKGKKQA*
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mRNA from alignment at Contig_114:155957..157442+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15058 ID=mRNA_15058|Name=jgi.p|Trimin1|352283|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1486bp|location=Sequence derived from alignment at Contig_114:155957..157442+ (Tribonema minus UTEX_B_3156 )
TGGGGAGGAAAAGCCTAAACAGCGCGTGCAGTCATGCGGCGAGGCTTCGG GGCGGTGAGCATGGCGCTCTCCCTGTGCCTGGCCTGCCTGCTGGCCGCTG CTACTGATGCCGCGCGCACCAGCAACACCAGTATGGTGAACTGCTCTCCC TGCATGCAGAAGGTGCTGCGGATAAGAGGTGGGGTCAAGAAGCCGGGGCA GGGCAAGGCGTCCAGCAAGGTGGGGCACACTGTAGCATGCTGCAAATTTT CTGTGGCATCGCAGCCTGTTGTTGCTTCTAGCCTTCCTGCTGGCCTTCCC CTCTTCAAGCCTGTTTGACGCGTCCGCGTGTTGCATTCACCGTCGAGCAA CAGCCGAAGCTATGTTGTTTCATGTACCACAGACTTCGTTCCTGCAAGTC TAGCAGCAGTGTTTTCGTTTAGAACTCATGGTGCTGAGCATTGTCTGCGC TGATGCAGCAGGGAAAACACTGACTTTCAGCTGTCAGTCCAGCCAGCAGG ACTTGTTTTGGTTAGAATCCATGTTGCTGCGCAAAGTCTGCTGCTTATGT GCAGTCGTGCGACAGGAAGAAACCTGACTTCAACTGTCAGCTCCTTTTGC AGTCCGCAGCATCAGTGTGACATGGCTTCAAGACAGTCAGACACAAAGTG GGACCTCACCCATGGCTGCATGGTGTTAGCTCGTTAGAACTGACTGCGCT CGCTGAAGTCCCTCTGTGGTGATACTTTTGCAGTTCGCAGCACTAGTATC TGGGTACAAAACAGTAAGACATAAGGTGGCACCGCACCATGGCTACATGT CGTAGCTTGTTGGAATGGACTGCGCTCGTTGGAGTCACCATGTATGTGGT GATACACACGTGAGGCCAGGAAGAAAGACGTGCAGGGCTCGTACCCTCCT TTCACAATTCGAGACTGGTGAAGAGTCAGTCACCAGACGCTACTGCGTTG GACAATCGGGCAGATACCATTCCCGACAATAGCTCCCGCTCGATCAACAG CTTATCAATGACTTCCTCTTCACAATAAGTGTCAGCAGTCGCTGAGCACA TACACACACACACACAAACACACACACACACACACACACACACACACACA CACACCCTTGCCGTGCAGGCCAAGAAGGTGTCAACAGTCGCTGAGCCATT GCCATGCACGTAACCCCTTCCCCCCGCCCCCCTCCCCCCCTCCCCCTCCC CCTTTCTCCCCCCCATATGCAGGGCAAGAAGGGGACGAAGGCCGCCAAGA AAGTGAAGATCACGCCCGTTTCATACGTAAAGGCGTTCTTCGCCAGCATG CTGGACCCCTCTTACGACGAGCAGTTCATCGAGAAGCCCGTGCACTCCGC GAGCGGTGCTGCAAGCCTTAAGAAGGGCAAGAAGCAGGCATAGCGGCGCT GCGCGCTGCGCCGACCGTCCGCTGCGTACGCCTGCATTTTCCCCGTCGAC AAATAGAATAATAAATACATGGACGCGTTGCCTTCA
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Coding sequence (CDS) from alignment at Contig_114:155957..157442+

>mRNA_15058 ID=mRNA_15058|Name=jgi.p|Trimin1|352283|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_114:155957..157442+ (Tribonema minus UTEX_B_3156 )
ATGCGGCGAGGCTTCGGGGCGGTGAGCATGGCGCTCTCCCTGTGCCTGGC
CTGCCTGCTGGCCGCTGCTACTGATGCCGCGCGCACCAGCAACACCAGTA
TGGTGAACTGCTCTCCCTGCATGCAGAAGGTGCTGCGGATAAGAGGTGGG
GTCAAGAAGCCGGGGCAGGGCAAGGCGTCCAGCAAGGGCAAGAAGGGGAC
GAAGGCCGCCAAGAAAGTGAAGATCACGCCCGTTTCATACGTAAAGGCGT
TCTTCGCCAGCATGCTGGACCCCTCTTACGACGAGCAGTTCATCGAGAAG
CCCGTGCACTCCGCGAGCGGTGCTGCAAGCCTTAAGAAGGGCAAGAAGCA
GGCATAG
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