mRNA_15038 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177487
Unique NamemRNA_15038
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177487 vs. uniprot
Match: A0A835ZAN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.110e-13
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MLVRSFTLKVETTSITRLPGPIGDLSALTMLDLGGCNML 117
            MLVRSFTLKVETTSITRLPGPIGDLSALTMLDLGGCNML
Sbjct:    1 MLVRSFTLKVETTSITRLPGPIGDLSALTMLDLGGCNML 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177487 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAN5_9STRA4.110e-13100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_152contigContig_152:356950..357882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177487|e_gw1.152.52.1
Hectar predicted targeting categoryother localisation
TranscriptId177809
TrackFilteredModels1
ProteinId177487
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177487gene_15038Tribonema minus UTEX_B_3156 geneContig_152 356950..357882 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15038_1exon_15038_1Tribonema minus UTEX_B_3156 exonContig_152 356950..357882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15038CDS_15038Tribonema minus UTEX_B_3156 CDSContig_152 356950..357882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177487Trimin1|177487|e_gw1.152.52.1Tribonema minus UTEX_B_3156 polypeptideContig_152 356950..357882 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15038 ID=mRNA_15038|Name=jgi.p|Trimin1|177487|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_152:356950..357882- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAGTGAGGTCATTCACTCTGAAAGTTGAGACTACTAGCATCACACG
ACTGCCAGGACCCATTGGCGACCTGTCGGCACTGACCATGCTTGATCTTG
GCGGGTGTAACATGCTCACTAGGCTGCCTGATAGCATTTGTGGATTGAGC
ACGTTGACGGTGCTTAAACTGGGCCTGCTGGCCGCGTTAGCGACGCTCGA
TCTGAGCTGGTGTGACAGGCTTGTCTGTCTGCCAGAGAGCGTCGCGGACC
TCGCAGCGCTGACAGAGCTAGATGTGCGCTTTTGCGGCAGCCTTGAGGAA
CTGCCAGCAAGCATCGGCACCCTCGCTGCACTGACCACGCTGCAGGCAAG
CTATTGCGTCAGCCTTGCGACGCTGCCAGACAGCATTGGTGCCCTGGCTG
CGTTGACGAAGCTTGATCTCTTCTGTTGCGAAGCGCTGGCTACCATACCG
GAGAGCATAGGCAGGATGACAGCTCTGACAGAGTTCACGATTACAGAGTC
TCATCATCTTGAGCGGCTGCCGGACAGCATCGGGGATCTGCGGGCATTGC
GGACACTTGACTTGAGGATTTGTACTGCGCTGACACGATTGCCGGACTCC
ATCGGCAACATGGCGGCACTCAAAAAAATCCACCTGGGCAACTGCGCGGA
ACTCACAATACTGCCAGACTCTATCGGCAACCTCAAGCCACTGAGGGCGC
TTGATCTGTACCATTGCAGCGGACTGTCGCACCTGCCCGACTCTATCGGT
GAGCTGGCGGCGCTCAGAACGTTGGACTTGAACAGCTGCACCGGGCTCGT
GAGCCTGCCAGCAACGCTCGGCCAGCTGACGCTGCTGACGCGCATAGACG
TTGACGGCTGTTGTGAGCTCGTGAGGCAGGCTGCCGCAGCGCTGTCGAAT
TCTGACGGTTCTGGGTGTTCAGACTCTGAGTGA
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protein sequence of jgi.p|Trimin1|177487

>Trimin1|177487|e_gw1.152.52.1 ID=Trimin1|177487|e_gw1.152.52.1|Name=jgi.p|Trimin1|177487|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MLVRSFTLKVETTSITRLPGPIGDLSALTMLDLGGCNMLTRLPDSICGLS
TLTVLKLGLLAALATLDLSWCDRLVCLPESVADLAALTELDVRFCGSLEE
LPASIGTLAALTTLQASYCVSLATLPDSIGALAALTKLDLFCCEALATIP
ESIGRMTALTEFTITESHHLERLPDSIGDLRALRTLDLRICTALTRLPDS
IGNMAALKKIHLGNCAELTILPDSIGNLKPLRALDLYHCSGLSHLPDSIG
ELAALRTLDLNSCTGLVSLPATLGQLTLLTRIDVDGCCELVRQAAAALSN
SDGSGCSDSE*
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mRNA from alignment at Contig_152:356950..357882-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15038 ID=mRNA_15038|Name=jgi.p|Trimin1|177487|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_152:356950..357882- (Tribonema minus UTEX_B_3156 )
ATGCTAGTGAGGTCATTCACTCTGAAAGTTGAGACTACTAGCATCACACG
ACTGCCAGGACCCATTGGCGACCTGTCGGCACTGACCATGCTTGATCTTG
GCGGGTGTAACATGCTCACTAGGCTGCCTGATAGCATTTGTGGATTGAGC
ACGTTGACGGTGCTTAAACTGGGCCTGCTGGCCGCGTTAGCGACGCTCGA
TCTGAGCTGGTGTGACAGGCTTGTCTGTCTGCCAGAGAGCGTCGCGGACC
TCGCAGCGCTGACAGAGCTAGATGTGCGCTTTTGCGGCAGCCTTGAGGAA
CTGCCAGCAAGCATCGGCACCCTCGCTGCACTGACCACGCTGCAGGCAAG
CTATTGCGTCAGCCTTGCGACGCTGCCAGACAGCATTGGTGCCCTGGCTG
CGTTGACGAAGCTTGATCTCTTCTGTTGCGAAGCGCTGGCTACCATACCG
GAGAGCATAGGCAGGATGACAGCTCTGACAGAGTTCACGATTACAGAGTC
TCATCATCTTGAGCGGCTGCCGGACAGCATCGGGGATCTGCGGGCATTGC
GGACACTTGACTTGAGGATTTGTACTGCGCTGACACGATTGCCGGACTCC
ATCGGCAACATGGCGGCACTCAAAAAAATCCACCTGGGCAACTGCGCGGA
ACTCACAATACTGCCAGACTCTATCGGCAACCTCAAGCCACTGAGGGCGC
TTGATCTGTACCATTGCAGCGGACTGTCGCACCTGCCCGACTCTATCGGT
GAGCTGGCGGCGCTCAGAACGTTGGACTTGAACAGCTGCACCGGGCTCGT
GAGCCTGCCAGCAACGCTCGGCCAGCTGACGCTGCTGACGCGCATAGACG
TTGACGGCTGTTGTGAGCTCGTGAGGCAGGCTGCCGCAGCGCTGTCGAAT
TCTGACGGTTCTGGGTGTTCAGACTCTGAGTGA
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Coding sequence (CDS) from alignment at Contig_152:356950..357882-

>mRNA_15038 ID=mRNA_15038|Name=jgi.p|Trimin1|177487|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=933bp|location=Sequence derived from alignment at Contig_152:356950..357882- (Tribonema minus UTEX_B_3156 )
ATGCTAGTGAGGTCATTCACTCTGAAAGTTGAGACTACTAGCATCACACG
ACTGCCAGGACCCATTGGCGACCTGTCGGCACTGACCATGCTTGATCTTG
GCGGGTGTAACATGCTCACTAGGCTGCCTGATAGCATTTGTGGATTGAGC
ACGTTGACGGTGCTTAAACTGGGCCTGCTGGCCGCGTTAGCGACGCTCGA
TCTGAGCTGGTGTGACAGGCTTGTCTGTCTGCCAGAGAGCGTCGCGGACC
TCGCAGCGCTGACAGAGCTAGATGTGCGCTTTTGCGGCAGCCTTGAGGAA
CTGCCAGCAAGCATCGGCACCCTCGCTGCACTGACCACGCTGCAGGCAAG
CTATTGCGTCAGCCTTGCGACGCTGCCAGACAGCATTGGTGCCCTGGCTG
CGTTGACGAAGCTTGATCTCTTCTGTTGCGAAGCGCTGGCTACCATACCG
GAGAGCATAGGCAGGATGACAGCTCTGACAGAGTTCACGATTACAGAGTC
TCATCATCTTGAGCGGCTGCCGGACAGCATCGGGGATCTGCGGGCATTGC
GGACACTTGACTTGAGGATTTGTACTGCGCTGACACGATTGCCGGACTCC
ATCGGCAACATGGCGGCACTCAAAAAAATCCACCTGGGCAACTGCGCGGA
ACTCACAATACTGCCAGACTCTATCGGCAACCTCAAGCCACTGAGGGCGC
TTGATCTGTACCATTGCAGCGGACTGTCGCACCTGCCCGACTCTATCGGT
GAGCTGGCGGCGCTCAGAACGTTGGACTTGAACAGCTGCACCGGGCTCGT
GAGCCTGCCAGCAACGCTCGGCCAGCTGACGCTGCTGACGCGCATAGACG
TTGACGGCTGTTGTGAGCTCGTGAGGCAGGCTGCCGCAGCGCTGTCGAAT
TCTGACGGTTCTGGGTGTTCAGACTCTGAGTGA
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