mRNA_15031 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: A0A835ZB58_9STRA (Diphthine--ammonia ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB58_9STRA) HSP 1 Score: 697 bits (1799), Expect = 1.230e-252 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 3 Query: 72 MASPYTLHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAEKYDVPTSIALAHAWIAAATRALWLCQALSGAAFFLVGGARAQRRRRCRRRSVHRFLGGADMQAADLAAGEYAPHSAAAAXXXXVALLLVALGAAALAAMRFVPRSAGAAVVARRFESKSESAARAAAEPNDHIAALSAANW 1169 MASPYTLHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAEKYDVPTSIALAHAWIAAATRALWLCQALSGAAFFLVGGARAQRRRRCRRRSVHRFLGGADMQAADLAAGEYAPHSAAAAXXXXVALLLVALGAAALAAMRFVPRSAGAAVVARRFESKSESAARAAAEPNDHIAALSAANW Sbjct: 1 MASPYTLHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAEKYDVPTSIALAHAWIAAATRALWLCQALSGAAFFLVGGARAQRRRRCRRRSVHRFLGGADMQAADLAAGEYAPHSAAAAXXXXVALLLVALGAAALAAMRFVPRSAGAAVVARRFESKSESAARAAAEPNDHIAALSAANW 366
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: A0A031GNP0_9BURK (Diphthami_syn_2 domain-containing protein n=54 Tax=Janthinobacterium TaxID=29580 RepID=A0A031GNP0_9BURK) HSP 1 Score: 222 bits (566), Expect = 1.320e-67 Identity = 119/230 (51.74%), Postives = 146/230 (63.48%), Query Frame = 3 Query: 90 LHSWSGGKDSALSLHHAMTEGGAKDVTL-ITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAE--KYDVPTSI 770 L SWSGGKDS L+L A G DV L ITA+ EDG ++RSH + L+ QA ++G +++ Y ASWASYEE+FI +L +A G A FGDIDL P+R WEEK VCAAAGL A LPLWG DRRA+ +F+A GF+A+V C+NG L +F GREFD FL DLP GV CGE GEFHTFVYDGP F APV +RR + +YD P ++ Sbjct: 5 LISWSGGKDSCLALWRARNAG--MDVPLLITAMDEDGRKSRSHGVPPELLAAQAASLGARLQRYHASWASYEEQFIAMLRAAKAEGIDHALFGDIDLQPHRDWEEK----------------------VCAAAGLTAHLPLWGGDRRALVDEFLAAGFKAIVVCINGQHLPRAFCGREFDASFLADLPPGVDACGENGEFHTFVYDGPAFSAPVALRRTQVLQYDAPANL 210
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: A0A7V7Z7D8_9BURK (Diphthine--ammonia ligase n=1 Tax=Janthinobacterium sp. FT58W TaxID=2654254 RepID=A0A7V7Z7D8_9BURK) HSP 1 Score: 218 bits (555), Expect = 5.350e-66 Identity = 111/229 (48.47%), Postives = 143/229 (62.45%), Query Frame = 3 Query: 90 LHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAE--KYDVPTSI 770 L SWSGGKDS L+L A G + L+TA+ EDG ++RSH + L+ QA +G +++ Y SW +YEE+F+++L + + AG A FGDIDL P+R WEEK VCAAAGL A LPLWG +RRA+ +F+A GF+A+V C+NG L A F GR+FD FL DLP GV CGE GEFHTFVYDGP F APV +RR + +YD P + Sbjct: 4 LISWSGGKDSCLALWRARAAG-MQVPLLVTAMDEDGRKSRSHGVPPELLETQAAMLGARLQRYHTSWGTYEEQFVRVLREAKDAGIDHALFGDIDLQPHRDWEEK----------------------VCAAAGLTAHLPLWGGERRALVDEFLAAGFKAIVVCINGQHLPADFCGRQFDSAFLADLPPGVDACGENGEFHTFVYDGPAFSAPVALRRTQLLRYDAPAEL 209
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: A0A255HX44_9BURK (Adenosine nucleotide hydrolase n=1 Tax=Janthinobacterium sp. PC23-8 TaxID=2012679 RepID=A0A255HX44_9BURK) HSP 1 Score: 214 bits (546), Expect = 1.240e-64 Identity = 111/229 (48.47%), Postives = 144/229 (62.88%), Query Frame = 3 Query: 90 LHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAE--KYDVPTSI 770 L SWSGGKDS L+L A G + + L+TA+ EDG ++RSH + L+ QA ++G ++ Y+ASWASYE +FI +L +A G A FGDIDL P+R WEEK VCA+AGL A LPLWG +R A+ ++F+A GF+A+V C+NG+ L F GREFD FL DLP GV CGE GEFHTFVYDGP F APV ++R + +YD P + Sbjct: 5 LISWSGGKDSCLALWRARAAGMSVPL-LVTAMDEDGRKSRSHGVTPELLEAQAASLGARLRRYNASWASYEAQFITMLRAAKAEGIAHALFGDIDLQPHRDWEEK----------------------VCASAGLQAHLPLWGENRLALVEEFLAAGFKAIVVCINGTHLAPEFCGREFDAAFLADLPPGVDACGENGEFHTFVYDGPAFSAPVALQRTQVLRYDAPPDL 210
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: A0A2U2HNW7_9BURK (Diphthine--ammonia ligase n=1 Tax=Massilia glaciei TaxID=1524097 RepID=A0A2U2HNW7_9BURK) HSP 1 Score: 211 bits (536), Expect = 4.580e-63 Identity = 116/232 (50.00%), Postives = 140/232 (60.34%), Query Frame = 3 Query: 81 PYTLHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRA--EKYDVPTSI 770 P L SWSGGKDS L+L A GG + LITA+ E G+++RSH I L+ QA A+G + FY SW SYEE+FI +L+ RA G A FGDIDL +R+WEEK VCAAAGL ARLPLW RR + +FIA GF+AVV CVNG+ L + GREFD FL +LP GV CGE GEFHTFVYDGP FG P+ R E+Y+ P + Sbjct: 6 PKALVSWSGGKDSCLALWRARA-GGTEIALLITAMDEAGQKSRSHGIPPALLAAQARAIGAPLTFYDTSWTSYEEKFIGVLAAARANGISEAIFGDIDLLAHREWEEK----------------------VCAAAGLEARLPLWLEPRRKLVDEFIAAGFKAVVVCVNGNYLGPEWCGREFDADFLAELPEGVDACGENGEFHTFVYDGPAFGHPIGFERVAVERYESPPQL 214
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: UPI00055CB6B4 (diphthine--ammonia ligase n=1 Tax=Noviherbaspirillum massiliense TaxID=1465823 RepID=UPI00055CB6B4) HSP 1 Score: 208 bits (530), Expect = 3.630e-62 Identity = 115/234 (49.15%), Postives = 137/234 (58.55%), Query Frame = 3 Query: 75 ASPYTLHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAEK--YDVPTSI 770 A+P L SWSGGKDS L++ A G A LITA+ E G +RSH + L+R QA A+G +++FY ASW +YEE FI L RA G A FGDIDL P+R+WEEK VCAAA L A LPLW R + Q+F+A GF+AVV CVNG+ L F GREFD FL LP GV CGE GEFHTFVYDGP F P+ +RR K Y P + Sbjct: 5 AAPSALVSWSGGKDSCLAMWRARQAGVAVH-RLITAMDESGASSRSHGLAPELLRAQAGALGLELQFYQASWKTYEERFIGALRAARADGFTHAIFGDIDLLPHREWEEK----------------------VCAAASLEASLPLWNEPREKLVQEFLASGFKAVVACVNGNHLGEEFCGREFDDAFLASLPPGVDACGENGEFHTFVYDGPAFARPLALRRGAKLRYQAPPEL 215
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: UPI001EDA1784 (diphthine--ammonia ligase n=1 Tax=Massilia sp. TS11 TaxID=2908003 RepID=UPI001EDA1784) HSP 1 Score: 206 bits (524), Expect = 2.230e-61 Identity = 113/226 (50.00%), Postives = 136/226 (60.18%), Query Frame = 3 Query: 90 LHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRA--EKYDVP 761 L SWSGGKDS L+L A + G + L+TA+ EDG+R+RSH + L+ QA A+G ++FY SW +YE FI +L RA G A FGDIDL P+R WEEK VCAAAGL A LPLWG RR + F+A GFRA+V CVNG+ L + GR+FD RFL +LP GV CGE GEFHTFV DGP F APV V+R E Y P Sbjct: 4 LVSWSGGKDSCLALWRAR-QAGTELALLVTAMDEDGQRSRSHGVPPHLLEAQAAALGLPLQFYPTSWQTYEARFIALLQAARARGIDEAVFGDIDLQPHRDWEEK----------------------VCAAAGLRASLPLWGAARRDLVDAFLAAGFRAIVVCVNGNYLGPEWCGRDFDARFLAELPDGVDACGENGEFHTFVVDGPAFSAPVAVQRGAVETYVAP 206
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: A0A418X4S2_9BURK (Diphthine--ammonia ligase n=1 Tax=Noviherbaspirillum cavernae TaxID=2320862 RepID=A0A418X4S2_9BURK) HSP 1 Score: 202 bits (515), Expect = 7.230e-60 Identity = 113/239 (47.28%), Postives = 137/239 (57.32%), Query Frame = 3 Query: 78 SPYTLHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAEK--YDVPTSIALAHAW 788 SP L SWSGGKDS L+L A G A LITA+ E G +RSH + L+ QA A+G ++ FY SW +YEE+FI IL R G A FGDIDL P+R+WEEK VC AG+ LPLW RR + +F++ GF+A+V CVNG+ L F GREFD++FL DLP V CGE GEFHTFVYDGP F PV RR+EK Y+ P A W Sbjct: 10 SPQALVSWSGGKDSCLALWRARQSGMAIR-RLITAMDESGGSSRSHGVPPALISAQAAALGAEMRFYDTSWKTYEEKFIAILRAARDDGITHAIFGDIDLMPHREWEEK----------------------VCGEAGITPCLPLWDEPRRKLVDEFLSLGFKAIVVCVNGTYLGEEFCGREFDEQFLADLPPNVDACGENGEFHTFVYDGPAFAQPVAFRRSEKQRYEAPAKFGGATYW 225
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: A0A5B8NE04_9BURK (Diphthine--ammonia ligase n=2 Tax=Noviherbaspirillum sp. UKPF54 TaxID=2601898 RepID=A0A5B8NE04_9BURK) HSP 1 Score: 202 bits (514), Expect = 7.700e-60 Identity = 109/225 (48.44%), Postives = 135/225 (60.00%), Query Frame = 3 Query: 81 PYTLHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRRAEKYD 755 P L SWSGGKDS L++ A + G LITA+ E G +RSH + L++ QADA+G ++ FY+ SW++YEE+FI L R G A FGDIDL P+R+WEEK VCA AG+ LPLW RRA+ +F++ GF+AVV CVNG+ L F GREFD+ FL DLP V CGE GEFHTFVYDGP F PV RR EK+ Sbjct: 2 PDALVSWSGGKDSCLAMWRAR-QSGMTIRRLITAMDEAGGDSRSHGVPPQLLQAQADAIGAEMRFYATSWSNYEEKFIATLGDARHDGITQAVFGDIDLVPHREWEEK----------------------VCARAGITPILPLWDEPRRALVDEFLSLGFKAVVVCVNGNYLGEEFVGREFDEDFLADLPAHVDACGENGEFHTFVYDGPAFAHPVSFRRLEKWS 203
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Match: G0AEC1_COLFT (Diphthami_syn_2 domain-containing protein n=2 Tax=Collimonas fungivorans TaxID=158899 RepID=G0AEC1_COLFT) HSP 1 Score: 200 bits (509), Expect = 4.880e-59 Identity = 109/217 (50.23%), Postives = 129/217 (59.45%), Query Frame = 3 Query: 90 LHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAICLPLMRQQADAVGCKIEFYSASWASYEEEFIKILSKHRAAGAITAYFGDIDLDPNRKWEEKRQRAAAQERRIGSARSHGRQSAVCAAAGLAARLPLWGRDRRAVAQDFIARGFRAVVCCVNGSRLDASFAGREFDQRFLDDLPRGVCPCGEGGEFHTFVYDGPNFGAPVRVRR 740 L SWSGGKDS L+L A + G + L+TA+ E+G+R RSH + L++ QADA+G + FYSASW YEE+FI L AG A FGDIDL +R WEEK VCA AGL A LPLW + RR + +F+A GF+A+V CVNG L F GREFD FL DLP V CGE GEFHTFVYDGP F PV RR Sbjct: 9 LVSWSGGKDSCLALWRAR-QSGVRIERLVTALDENGQRARSHGVPPALLQAQADALGLPLVFYSASWQQYEEKFIAALRDAHGAGMRHAVFGDIDLQAHRDWEEK----------------------VCAQAGLQASLPLWNQPRRRLVDEFLALGFKALVVCVNGRHLPQDFCGREFDTAFLADLPPEVDACGENGEFHTFVYDGPAFAHPVPFRR 202 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353265 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15031 ID=mRNA_15031|Name=jgi.p|Trimin1|353265|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1172bp|location=Sequence derived from alignment at Contig_152:277678..281471- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCTTTTGCAGGCTTGCCGCCACATCAGGAAATGCTCATCGGTACGCTTAback to top protein sequence of jgi.p|Trimin1|353265 >Trimin1|353265|estExt_Genemark1.C_Ctg_1520047 ID=Trimin1|353265|estExt_Genemark1.C_Ctg_1520047|Name=jgi.p|Trimin1|353265|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=367bp MASPYTLHSWSGGKDSALSLHHAMTEGGAKDVTLITAISEDGERTRSHAIback to top mRNA from alignment at Contig_152:277678..281471- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15031 ID=mRNA_15031|Name=jgi.p|Trimin1|353265|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3794bp|location=Sequence derived from alignment at Contig_152:277678..281471- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_152:277678..281471- >mRNA_15031 ID=mRNA_15031|Name=jgi.p|Trimin1|353265|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1101bp|location=Sequence derived from alignment at Contig_152:277678..281471- (Tribonema minus UTEX_B_3156 )back to top |