mRNA_15025 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177452
Unique NamemRNA_15025
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177452 vs. uniprot
Match: A0A835Z760_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z760_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.520e-17
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 MTLVKSLTLKVEALTLPDFIRDLSTLAKLDLSDSTILIGLPNSFGRLAXXXXXXXXXXXXXXXXXXXXXXSLTALT 228
            MTLVKSLTLKVEALTLPDFIRDLSTLAKLDLSDSTILIGLPNSFGRLAXXXXXXXXXXXXXXXXXXXXXXSLTALT
Sbjct:    1 MTLVKSLTLKVEALTLPDFIRDLSTLAKLDLSDSTILIGLPNSFGRLAXXXXXXXXXXXXXXXXXXXXXXSLTALT 76
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177452 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z760_9STRA2.520e-17100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_152contigContig_152:226568..227529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177452|e_gw1.152.43.1
Hectar predicted targeting categoryother localisation
TranscriptId177774
TrackFilteredModels1
ProteinId177452
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177452gene_15025Tribonema minus UTEX_B_3156 geneContig_152 226568..227529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177452Trimin1|177452|e_gw1.152.43.1Tribonema minus UTEX_B_3156 polypeptideContig_152 226568..227529 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15025_2exon_15025_2Tribonema minus UTEX_B_3156 exonContig_152 226568..226944 -
exon_15025_1exon_15025_1Tribonema minus UTEX_B_3156 exonContig_152 227085..227529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15025CDS_15025Tribonema minus UTEX_B_3156 CDSContig_152 227085..227529 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15025 ID=mRNA_15025|Name=jgi.p|Trimin1|177452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_152:226568..227529- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCGTCAAGTCGCTCACGTTGAAAGTTGAGGCTCTGACACTGCC
AGATTTCATCCGCGACCTGTCGACGCTGGCCAAGCTTGATCTCAGCGATT
CCACCATACTCATTGGCCTGCCCAACAGCTTTGGCAGGTTGGCCTCGACG
CTGACCACGCTTGATGTCAGCGGCTGCATCATGCTCACCGGCCTGCCCAA
CAGCATTGGCAGTCTGACCGCGTTGACAGCGCTCAGAGTCAGTAACTGTT
GGCAGCTCACTCTCCTGCCAGACAGCATCGGCCAACTGGCCGCGTTAGCG
ACGCTTGACCTGAGCCGGTGTGCAAGCCTTGACTGCCTGCCAGAGAGCGT
CGCGGACCTCGCAGCGCTGACTGAGCTAGATGTGCGCGGTTGCAGCACGC
TTCAGGCACTACCGGAGACCATTGGCAACCTTGCTGCACTGACAAAACTC
AAATTAAGTTGTTGCATTTATCTGCGACAGCTGCCAGATGGCATTGGCAG
TTTGCAGGCGTTGCAGATGCTCAGCTTGTCGGGCTGCAGACGGCTCGCCG
CTCTGCCAGATTCTATCGGCAATCTCAAGGCACTGACGTTGCTCAATCTG
GGGCGCTGCACGAGTCTGTCGCGCTTGCCCGACTCCATGGGCAATCTTGC
GGCGCTGAGCTCGCTCAACGTCACGTGCTGCAGTGGGCTCGTGAGCCTGC
CATCGACGCTGCGCCAGCTGACGCTGCTGACGCGCATCAATGCTGGCGGG
TGTTGTGAGGTTGTGAGCAAGGCTGCAAGAGCGCTTGTGTCGCACGCGGA
CACTCAACGTCCCAGAGGCTGA
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protein sequence of jgi.p|Trimin1|177452

>Trimin1|177452|e_gw1.152.43.1 ID=Trimin1|177452|e_gw1.152.43.1|Name=jgi.p|Trimin1|177452|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
MTLVKSLTLKVEALTLPDFIRDLSTLAKLDLSDSTILIGLPNSFGRLAST
LTTLDVSGCIMLTGLPNSIGSLTALTALRVSNCWQLTLLPDSIGQLAALA
TLDLSRCASLDCLPESVADLAALTELDVRGCSTLQALPETIGNLAALTKL
KLSCCIYLRQLPDGIGSLQALQMLSLSGCRRLAALPDSIGNLKALTLLNL
GRCTSLSRLPDSMGNLAALSSLNVTCCSGLVSLPSTLRQLTLLTRINAGG
CCEVVSKAARALVSHADTQRPRG*
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mRNA from alignment at Contig_152:226568..227529-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15025 ID=mRNA_15025|Name=jgi.p|Trimin1|177452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=962bp|location=Sequence derived from alignment at Contig_152:226568..227529- (Tribonema minus UTEX_B_3156 )
ATGACGCTCGTCAAGTCGCTCACGTTGAAAGTTGAGGCTCTGACACTGCC
AGATTTCATCCGCGACCTGTCGACGCTGGCCAAGCTTGATCTCAGCGATT
CCACCATACTCATTGGCCTGCCCAACAGCTTTGGCAGGTTGGCCTCGACG
CTGACCACGCTTGATGTCAGCGGCTGCATCATGCTCACCGGCCTGCCCAA
CAGCATTGGCAGTCTGACCGCGTTGACAGCGCTCAGAGTCAGTAACTGTT
GGCAGCTCACTCTCCTGCCAGACAGCATCGGCCAACTGGCCGCGTTAGCG
ACGCTTGACCTGAGCCGGTGTGCAAGCCTTGACTGCCTGCCAGAGAGCGT
CGCGGACCTCGCAGCGCTGACTGAGCTAGATGTGCGCGGTTGCAGCACGC
TTCAGGCACTACCGGAGACCATTGGCAACCTTGCTGCACTGACAAGTCTC
CATGCGAGCCATTGCTTCAACCTGATAGCCTGCCAGACAGCATTGGCACC
CTGGCCGAATTGACGAAGCTTGATCTCAGCTATACAGAACTCACTGGCTT
GCCTAATGGCATCGCCAATCTGACCGCATTGACAGAACTCAAATTAAGTT
GTTGCATTTATCTGCGACAGCTGCCAGATGGCATTGGCAGTTTGCAGGCG
TTGCAGATGCTCAGCTTGTCGGGCTGCAGACGGCTCGCCGCTCTGCCAGA
TTCTATCGGCAATCTCAAGGCACTGACGTTGCTCAATCTGGGGCGCTGCA
CGAGTCTGTCGCGCTTGCCCGACTCCATGGGCAATCTTGCGGCGCTGAGC
TCGCTCAACGTCACGTGCTGCAGTGGGCTCGTGAGCCTGCCATCGACGCT
GCGCCAGCTGACGCTGCTGACGCGCATCAATGCTGGCGGGTGTTGTGAGG
TTGTGAGCAAGGCTGCAAGAGCGCTTGTGTCGCACGCGGACACTCAACGT
CCCAGAGGCTGA
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Coding sequence (CDS) from alignment at Contig_152:226568..227529-

>mRNA_15025 ID=mRNA_15025|Name=jgi.p|Trimin1|177452|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_152:226568..227529- (Tribonema minus UTEX_B_3156 )
ATGACGCTCGTCAAGTCGCTCACGTTGAAAGTTGAGGCTCTGACACTGCC
AGATTTCATCCGCGACCTGTCGACGCTGGCCAAGCTTGATCTCAGCGATT
CCACCATACTCATTGGCCTGCCCAACAGCTTTGGCAGGTTGGCCTCGACG
CTGACCACGCTTGATGTCAGCGGCTGCATCATGCTCACCGGCCTGCCCAA
CAGCATTGGCAGTCTGACCGCGTTGACAGCGCTCAGAGTCAGTAACTGTT
GGCAGCTCACTCTCCTGCCAGACAGCATCGGCCAACTGGCCGCGTTAGCG
ACGCTTGACCTGAGCCGGTGTGCAAGCCTTGACTGCCTGCCAGAGAGCGT
CGCGGACCTCGCAGCGCTGACTGAGCTAGATGTGCGCGGTTGCAGCACGC
TTCAGGCACTACCGGAGACCATTGGCAACCTTGCTGCACTGACAAAACTC
AAATTAAGTTGTTGCATTTATCTGCGACAGCTGCCAGATGGCATTGGCAG
TTTGCAGGCGTTGCAGATGCTCAGCTTGTCGGGCTGCAGACGGCTCGCCG
CTCTGCCAGATTCTATCGGCAATCTCAAGGCACTGACGTTGCTCAATCTG
GGGCGCTGCACGAGTCTGTCGCGCTTGCCCGACTCCATGGGCAATCTTGC
GGCGCTGAGCTCGCTCAACGTCACGTGCTGCAGTGGGCTCGTGAGCCTGC
CATCGACGCTGCGCCAGCTGACGCTGCTGACGCGCATCAATGCTGGCGGG
TGTTGTGAGGTTGTGAGCAAGGCTGCAAGAGCGCTTGTGTCGCACGCGGA
CACTCAACGTCCCAGAGGCTGA
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