mRNA_15018 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353256 vs. uniprot
Match: A0A836CJI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI8_9STRA) HSP 1 Score: 776 bits (2003), Expect = 5.390e-274 Identity = 597/597 (100.00%), Postives = 597/597 (100.00%), Query Frame = 1
Query: 97 APRPGTAPXXXSRITQLARDRSAVYRQREAARAAQKQELELRECTFTPDTGASNGRRGGXXXXXXXXXXEAVPVHERLLRQQKDQEAHRALAAAQLEAAALAECSFRPRLVARPRAAAAAAAAPPLHERVWDVQWQREGRLRELAERAHAESAPTFAPAIXXXXXRLAXRARGDDXXXXXXXXXSPTRDRSSMSLSQNPGERLAREAAEXXXXXXXXXXXXXXXXAAENTFTPELSAGTQRLVRRRRELRAPFEERQAALEARSRQRGAARLRCEREREAAWFTPATAPRSDALVRRRMPERARETPEQRCTRMALVEVSAXXXXXXXXXXXXXXXXWGRRMGAEAERRXXXXXXRQAEAASQHAFTPDINPISRALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARPDMYGADNKYRLPVREPWRIAQGIRDKAEERAARLATAQAEREVAEMQACTFAPTLPTPPPPTSGPILVRGLGRHLELCDAARRAAAAADARAAAAFAVRPGAQRRGSDGLTLVQPFRLSGAEARVKWAAR 1887
APRPGTAPXXXSRITQLARDRSAVYRQREAARAAQKQELELRECTFTPDTGASNGRRGGXXXXXXXXXXEAVPVHERLLRQQKDQEAHRALAAAQLEAAALAECSFRPRLVARPRAAAAAAAAPPLHERVWDVQWQREGRLRELAERAHAESAPTFAPAIXXXXXRLAXRARGDDXXXXXXXXXSPTRDRSSMSLSQNPGERLAREAAEXXXXXXXXXXXXXXXXAAENTFTPELSAGTQRLVRRRRELRAPFEERQAALEARSRQRGAARLRCEREREAAWFTPATAPRSDALVRRRMPERARETPEQRCTRMALVEVSAXXXXXXXXXXXXXXXXWGRRMGAEAERRXXXXXXRQAEAASQHAFTPDINPISRALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARPDMYGADNKYRLPVREPWRIAQGIRDKAEERAARLATAQAEREVAEMQACTFAPTLPTPPPPTSGPILVRGLGRHLELCDAARRAAAAADARAAAAFAVRPGAQRRGSDGLTLVQPFRLSGAEARVKWAAR
Sbjct: 33 APRPGTAPXXXSRITQLARDRSAVYRQREAARAAQKQELELRECTFTPDTGASNGRRGGXXXXXXXXXXEAVPVHERLLRQQKDQEAHRALAAAQLEAAALAECSFRPRLVARPRAAAAAAAAPPLHERVWDVQWQREGRLRELAERAHAESAPTFAPAIXXXXXRLAXRARGDDXXXXXXXXXSPTRDRSSMSLSQNPGERLAREAAEXXXXXXXXXXXXXXXXAAENTFTPELSAGTQRLVRRRRELRAPFEERQAALEARSRQRGAARLRCEREREAAWFTPATAPRSDALVRRRMPERARETPEQRCTRMALVEVSAXXXXXXXXXXXXXXXXWGRRMGAEAERRXXXXXXRQAEAASQHAFTPDINPISRALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARPDMYGADNKYRLPVREPWRIAQGIRDKAEERAARLATAQAEREVAEMQACTFAPTLPTPPPPTSGPILVRGLGRHLELCDAARRAAAAADARAAAAFAVRPGAQRRGSDGLTLVQPFRLSGAEARVKWAAR 629
BLAST of jgi.p|Trimin1|353256 vs. uniprot
Match: D7FJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD2_ECTSI) HSP 1 Score: 195 bits (495), Expect = 6.840e-49 Identity = 181/586 (30.89%), Postives = 247/586 (42.15%), Query Frame = 1
Query: 133 RITQLARDRSAVYRQREAARAAQKQELELRECTFTPD-TGASNGRRGGXXXXXXXXXXEAVPVHERLLRQQKDQEAHRALAAAQLEAAALAECSFRPR-----------LVARPRAAAAAAAAPPLHERVWDVQWQREGRLRELAERAHAESAPTFAPAIXXXXXRLAXRARGDDXXXXXXXXXSPTRDRSSMSLSQNPGERLAREAAEXXXXXXXXXXXXXXXXAAENTFTPELSAGTQRLVRRRRELRAPFEERQAALEARSRQRGAARLRCEREREAAWFTPATAPRSDALVRRRMPERARETPEQRCTRMALVEVSAXXXXXXXXXXXXXXXXWGRRMGAEAERRXXXXXXRQAEAASQHAFTPDINPISRALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARPDMYGADNKYRLPVREPWRIAQGIRDKAEERAARLATAQAEREVAEMQACTFAPTLPTPPPPTSGPILVRGLGRHLELCDAARRAAAAADARAAAAFAVRPGAQRRGSDGLTLVQPFRLS 1854
RI +LARDR A+Y RE R ++E E +ECTF P+ +S RRG P+HERL ++ +++EA RALA LE AL EC+F+ R A AA PLH+RVW+V+ +RE +LR L TFAP R++ R XXX + S + RL +A A +TF P +S GT+ LVR+R +L+APFE+R+A ++A+ ++R R + E WF P TA R+DAL+RRRMPER ET E+R RMA A+ RR ++A+ + F P +NP++ ++A A +YG N+YRL VREP R+ +R + E+ R + E+EVAEMQ CTF P + GP+LVRGLGRHLEL D A++ A AF VRP A RR G T+V+PF LS
Sbjct: 360 RIKELARDRQALYSDRERRRKELQEEAETKECTFHPNIVSSSAARRGAAGHGSGGAGARRPPLHERLHKEAREREAARALAHHHLENEALRECTFQARGAWWGGDGGREPTLNTTGAVPAADHRPLHQRVWEVEREREHKLRLLVADKEEREGATFAPP---PMGRVSERLADTRPAFAGGXXXXXCGEGVGRSAT-----RLQEQAMWARERRRLRVQEHEEAEARMSTFEPSISRGTKSLVRKRPDLQAPFEQRRAIMDAKRKERERLRQEARAKEETGWFNPTTAQRTDALLRRRMPERLEETVEERVKRMAA---------------------------ADDHRRRNFVMTQKAKEKLECTFRPSLNPVTHSMAQASPLDELVNNLRGQRVRERVKAKVSDAQACSHKPTLLAEAALLHTDAEGAGASRDGGGCAGSGGRGA------------------AAAGLYGPGNRYRLSVREPARMTAELRAREREQEERFNALRQEKEVAEMQRCTFVPQTNSAILRAEGPVLVRGLGRHLELKDVAQQRERERRXXEARAFGVRPRAVRRSVLGETIVEPFSLS 892
BLAST of jgi.p|Trimin1|353256 vs. uniprot
Match: A0A7S1XLT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLT3_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 7.850e-13 Identity = 137/584 (23.46%), Postives = 209/584 (35.79%), Query Frame = 1
Query: 145 LARDRSAVYRQREAARAAQKQELELRECTFTPDTGASNGRRGGXXXXXXXXXXEAVPVHERLLRQQKDQEAHRALAAAQLEAAALAECSFRPRLVARP-RAAAAAAAAPPLHERVWDVQWQREGRLRELAERAHAESAP--TFAPAIXXXXXRLAXRARGDDXXXXXXXXXSPTRDRSSMSLSQNP--------GERLAREAAEXXXXXXXXXXXXXXXXAAENTFTPELSAGTQRLVRRRRELRAPFEERQAALEARSRQRGAARLRCEREREAAWFTPATAPRSDALVRR-RMPERARETPEQRCTRMALVEVSAXXXXXXXXXXXXXXXXWGRRMGAEAERRXXXXXXRQAEAASQHAFTPDINPISRALAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARPDMYGADNKYRLPVREPWRIAQGIRDKAEERAARLATAQAEREVAEMQACTFAPTLPTPPPPTSGP--ILVRGLGRHLELCDAARRAAAAADARAAAAFAVRPGAQRRGSDGLTLVQPFRLS 1854
L DR+ Y +RE R ++ E E CTF P+ + G + + ERL ++ ++E R LE A +++ F+P + R A A P+H R +VQ + + H E+ P TF P I R+A + +P S+ ++ P RL EA +E F P+++ GT++++ LR PF ERQAALEA+ RQR R E E AW++P +++ ++++ R P+ E R R+ + V +AER Q EA F P I+P+SR LAA P + G + + + A+ AE+R +AERE+ EM+ CTF P T PP P ++VRGLGRHLEL + A+R A R A+ + R + G+T+ +PF+LS
Sbjct: 38 LRADRTPFYDERERQRLEREAE-ETEGCTFRPELAPGTIKALGPQRSGT----DPMGTSERLYQEADEREVVRLCTKYHLEEAEMSQYPFQPEIDTHSKRLVARNADYAPIHVRSSEVQRNKAMNISAAKTNLH-ENHPEHTFKPKIDPVSARMAKKREEQLLHGGESGAEAPVLAWSAHEMADKPRAKRMPAVARRLEAEAKAAQVRKEKAIEAREAQLESETPFAPQIARGTKKIMHNNAVLRLPFRERQAALEAKRRQRAETRAALAAEAENAWYSPHLTSKTEKILQKSRKPQHRARRLESRRDRITRLSVG------------------------DAERIAASRRAAQEEAQKGMPFRPKIDPVSRKLAASTNDYEKHANVRGERMKRRSEEVARLRFLEECSFAPRLESDPVARDMT-------------------------------------RMPTVSGDMSHIKTVLDSSMDYARKQETLAEKRQRE----RAERELREMRECTFKPKTITRKPPKVAPKPVVVRGLGRHLELREMAKRKAEEQRERERKAWGGSTSSGGRNAAGVTIQKPFKLS 550
BLAST of jgi.p|Trimin1|353256 vs. uniprot
Match: A0A6H5KJ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ13_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.570e-10 Identity = 51/122 (41.80%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 1489 ARPDMYGADNKYRLPVREPWRIAQGIRDKAEERAARLATAQAEREVAEMQACTFAPTLPTPPPPTSGPILVRGLGRHLELCDAARRAAAAADARAAAAFAVRPGAQRRGSDGLTLVQPFRLS 1854
A D+YG N+YRL VREP R+ +R + E+ R +A E GP+LVRGLGRHLEL D A++ R A AF VRPGA RR G T+V+PF LS
Sbjct: 94 AAADLYGPGNRYRLSVREPARMTAELRAREREQEERTNSAILRAE---------------------GPVLVRGLGRHLELKDVAQQRERERREREAQAFGVRPGAVRRSVLGETIVEPFSLS 194
BLAST of jgi.p|Trimin1|353256 vs. uniprot
Match: A0A2P6TS59_CHLSO (Uncharacterized protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS59_CHLSO) HSP 1 Score: 65.1 bits (157), Expect = 3.640e-7 Identity = 51/116 (43.97%), Postives = 62/116 (53.45%), Query Frame = 1
Query: 1552 IAQGIRDKAEERAARLATAQAEREVAEMQACTFAPTLPTPPPPTSGPILVRGLGRHLELCDAARRAAAAADARAAAAFAVRPGAQRRGSDGLTLVQPFRLSG-----AEARVKWAA 1884
+ Q I + ER AR A A+AE E ++ C+FAP + GP+LVRGL RHLEL A R A ADARAA F P R G T+ QPF+L G A+A K AA
Sbjct: 666 LTQRIAEYQAERDARAAAARAEEEEQRLRECSFAPDINRTRVQAKGPVLVRGLDRHLELRQLADRRRAEADARAARVFHANP----RTKQGATVPQPFQLRGHALLEAKAAQKQAA 777 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353256 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15018 ID=mRNA_15018|Name=jgi.p|Trimin1|353256|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2025bp|location=Sequence derived from alignment at Contig_152:178651..183096- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCTCCTGCAGCAGCACCATCACCGCCGCCGCCGCCGCCGCCGCGGCAback to top protein sequence of jgi.p|Trimin1|353256 >Trimin1|353256|estExt_Genemark1.C_Ctg_1520033 ID=Trimin1|353256|estExt_Genemark1.C_Ctg_1520033|Name=jgi.p|Trimin1|353256|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=675bp MPPAAAPSPPPPPPPRHRQQQRGKSAVAAAAAAPRPGTAPPRPSRITQLAback to top mRNA from alignment at Contig_152:178651..183096- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15018 ID=mRNA_15018|Name=jgi.p|Trimin1|353256|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4446bp|location=Sequence derived from alignment at Contig_152:178651..183096- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_152:178651..183096- >mRNA_15018 ID=mRNA_15018|Name=jgi.p|Trimin1|353256|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2025bp|location=Sequence derived from alignment at Contig_152:178651..183096- (Tribonema minus UTEX_B_3156 )back to top |