mRNA_1501 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161668
Unique NamemRNA_1501
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161668 vs. uniprot
Match: A0A835Z8A2_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A2_9STRA)

HSP 1 Score: 211 bits (537), Expect = 2.490e-69
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 MKGGCTGCVRQRQSFNPFDEVPFDPSKLRTPSKSATRSRIGTLTVGDVRYIFTQLRGYSDINPNRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKSQGRLQ 312
            MKGGCTGCVRQRQSFNPFDEVPFDPSKLRTPSKSATRSRIGTLTVGDVRYIFTQLRGYSDINPNRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKSQGRLQ
Sbjct:    1 MKGGCTGCVRQRQSFNPFDEVPFDPSKLRTPSKSATRSRIGTLTVGDVRYIFTQLRGYSDINPNRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKSQGRLQ 104
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BLAST of jgi.p|Trimin1|161668 vs. uniprot
Match: Q8QNM3_ESV1K (EsV-1-41 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM3_ESV1K)

HSP 1 Score: 57.4 bits (137), Expect = 4.830e-8
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   49 PFDEVPFDP---------SKLRTPSKSATRSRIGTLTVGDVRYIFTQLRGYS-DINPNRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKS 297
            PF E P D          +K     +S  +SR+G +TVGD+RY F QLR    D++P+  L+ G+SAG F+L YL ++     ST  +K +KS
Sbjct:   35 PFYEKPVDEIQSIQSAKYAKRSQRHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLSPDMMLYNGQSAGEFALKYLRET-----STATRKRRKS 122
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BLAST of jgi.p|Trimin1|161668 vs. uniprot
Match: D8LP74_ECTSI (EsV-1-41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP74_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 5.530e-8
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   49 PFDEVPFDPSKLRTPSKSATRS---------RIGTLTVGDVRYIFTQLRGYS-DINPNRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKS 297
            PF E P D  +    +K A RS         R+G +TVGD+RY F QLR    D++P+  L+ G+SAG F+L YL ++     ST  +K +KS
Sbjct:   35 PFYEKPVDEIQSTQSAKYAKRSQRHRSTAQSRLGDMTVGDIRYCFQQLRNAGKDLSPDMMLYNGQSAGEFALKYLRET-----STATRKRRKS 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161668 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z8A2_9STRA2.490e-69100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
Q8QNM3_ESV1K4.830e-838.71EsV-1-41 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP74_ECTSI5.530e-839.78EsV-1-41 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1255474..1255788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161668|e_gw1.18.266.1
Hectar predicted targeting categoryother localisation
TranscriptId161990
TrackFilteredModels1
ProteinId161668
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161668gene_1501Tribonema minus UTEX_B_3156 geneContig_18 1255474..1255788 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1501_1exon_1501_1Tribonema minus UTEX_B_3156 exonContig_18 1255474..1255788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1501CDS_1501Tribonema minus UTEX_B_3156 CDSContig_18 1255474..1255788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161668Trimin1|161668|e_gw1.18.266.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1255474..1255788 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1501 ID=mRNA_1501|Name=jgi.p|Trimin1|161668|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_18:1255474..1255788+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGCGGCTGCACAGGTTGCGTTAGACAAAGGCAGTCGTTCAATCC
CTTTGACGAGGTGCCTTTCGATCCTAGTAAGCTGAGGACTCCATCAAAGA
GTGCGACTCGATCTAGAATTGGGACCCTAACTGTGGGGGATGTCCGGTAC
ATTTTCACGCAACTTAGGGGTTACTCGGACATTAATCCAAATCGAACACT
GTGGACTGGCGAGAGTGCAGGAAGCTTTAGTTTGAACTATTTGCTACAGA
GCAACAACATGCTTAGCAGTACAGGTGAGAAGAAGACCAAGAAGTCACAA
GGCAGATTGCAATAG
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protein sequence of jgi.p|Trimin1|161668

>Trimin1|161668|e_gw1.18.266.1 ID=Trimin1|161668|e_gw1.18.266.1|Name=jgi.p|Trimin1|161668|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MKGGCTGCVRQRQSFNPFDEVPFDPSKLRTPSKSATRSRIGTLTVGDVRY
IFTQLRGYSDINPNRTLWTGESAGSFSLNYLLQSNNMLSSTGEKKTKKSQ
GRLQ*
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mRNA from alignment at Contig_18:1255474..1255788+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1501 ID=mRNA_1501|Name=jgi.p|Trimin1|161668|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_18:1255474..1255788+ (Tribonema minus UTEX_B_3156 )
ATGAAGGGCGGCTGCACAGGTTGCGTTAGACAAAGGCAGTCGTTCAATCC
CTTTGACGAGGTGCCTTTCGATCCTAGTAAGCTGAGGACTCCATCAAAGA
GTGCGACTCGATCTAGAATTGGGACCCTAACTGTGGGGGATGTCCGGTAC
ATTTTCACGCAACTTAGGGGTTACTCGGACATTAATCCAAATCGAACACT
GTGGACTGGCGAGAGTGCAGGAAGCTTTAGTTTGAACTATTTGCTACAGA
GCAACAACATGCTTAGCAGTACAGGTGAGAAGAAGACCAAGAAGTCACAA
GGCAGATTGCAATAG
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Coding sequence (CDS) from alignment at Contig_18:1255474..1255788+

>mRNA_1501 ID=mRNA_1501|Name=jgi.p|Trimin1|161668|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_18:1255474..1255788+ (Tribonema minus UTEX_B_3156 )
ATGAAGGGCGGCTGCACAGGTTGCGTTAGACAAAGGCAGTCGTTCAATCC
CTTTGACGAGGTGCCTTTCGATCCTAGTAAGCTGAGGACTCCATCAAAGA
GTGCGACTCGATCTAGAATTGGGACCCTAACTGTGGGGGATGTCCGGTAC
ATTTTCACGCAACTTAGGGGTTACTCGGACATTAATCCAAATCGAACACT
GTGGACTGGCGAGAGTGCAGGAAGCTTTAGTTTGAACTATTTGCTACAGA
GCAACAACATGCTTAGCAGTACAGGTGAGAAGAAGACCAAGAAGTCACAA
GGCAGATTGCAATAG
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