mRNA_15006 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|177479
Unique Name	mRNA_15006
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|177479 vs. uniprot
Match: A0A835ZAL3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.850e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1

Query:    1 MATLPDSIGGWAALKTLDLSFCGELA 78
            MATLPDSIGGWAALKTLDLSFCGELA
Sbjct:    1 MATLPDSIGGWAALKTLDLSFCGELA 26

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|177479 vs. uniprot

BLAST of jgi.p|Trimin1|177479 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZAL3_9STRA	1.850e-5	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_152	contig	Contig_152:114061..115191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|177479\|e_gw1.152.66.1
Hectar predicted targeting category	other localisation
TranscriptId	177801
Track	FilteredModels1
ProteinId	177479

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177479	gene_15006	Tribonema minus UTEX_B_3156	gene	Contig_152 114061..115191 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15006_1	exon_15006_1	Tribonema minus UTEX_B_3156	exon	Contig_152 114061..115191 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15006	CDS_15006	Tribonema minus UTEX_B_3156	CDS	Contig_152 114061..115191 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177479	Trimin1\|177479\|e_gw1.152.66.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_152 114061..115191 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_152:114061..115191+
coding sequence from alignment at Contig_152:114061..115191+

spliced messenger RNA

>mRNA_15006 ID=mRNA_15006|Name=jgi.p|Trimin1|177479|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_152:114061..115191+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACGCTGCCTGACAGCATCGGAGGCTGGGCGGCGCTGAAAACGCT
GGACCTCAGCTTTTGCGGCGAGCTCGCGAGCCTGCCAGACAGCATCTGCG
ACCTGGCCGCACTCACGAGGTTCGACCTTACCGGCTGTGTCACCCTGGCA
GCGCTCCCCGACGGCATCGGGCGCCTGCGCGAGCTGACCATGCTGTACCT
GACTGGCTGCTGGTCGCTCACCAGCTTGCCCGGCAGCATCGGCCATCTGA
CGTCGCTGATGGACTTCGAGCTGGACGCATGCACTGCGCTCACCGGACTA
CCCGACAGTGTCGTCAATCTGGCCGCGCTGACGCGACTGAACCTAAACTT
CAGCACCGCGCTCGCCACCCTGCCGCACCGCATCGGGGACCTGGCAGCGC
TCAAAGCGCTCTTCCTTTGCGAGTGCGACAACCTGGAAAGGTTGCCGGAC
AGCACTGGCGACCTGGCGCTGCTGCAGGTGCTCAAGCTGGCGGATGCGGG
CATCTCGTCGCTGCCGCACACCATCGGCAACCTATCGTCACTGACCCAGC
TGGACCTCCGCTACATGCGCTTCACCGGTCTGCCGGACGGCATCTGCGGT
CTGACGGCGCTGGTCAGCCTCGACCTGACCGAAAGCGCGCTCACGGCGCT
GCCGGAGGGCATCGGCGCGCTGGCGGCGCTGACGCATCTCATCCTCAAGT
GCTGCCCGCAGCTTGCCGCCCTGCCGGACTCCATCGGCGACCTCGCGGCA
CTGGTCTACCTCGACGCGCACGGCTGCGGAGCGCTGACGCGGTTGCCAGA
CGGCATGGGCCGCGCGCGGACCTTGAGAGCGCTTCTGCTGGGGTCATGCA
CGCGTCTCGCAGAACTGCCGGGCTCCCTCTGCGACCTGGTGGCGCTAGAG
CGGCTCGACCTCAGCGCCTGCGAGCTCCTGACGCATCTTCCGGAGCGCAT
GGGCGAGCTGGTGCGGCTCACGTCGCTCGACCTGACCGGCTGCAGCGGAC
TGCTGAGCCTGCCGGGCGGGCTGCGGACGCTGCGCCGGCTCCCGCGCATC
GACGTCGTGGGCTGCGCGGATGCCGTTCGGCTGCAGGCGAAGACGCCCTT
GCAGGACGACGATTTTGATGCCTCGAAGTAA

protein sequence of jgi.p|Trimin1|177479

>Trimin1|177479|e_gw1.152.66.1 ID=Trimin1|177479|e_gw1.152.66.1|Name=jgi.p|Trimin1|177479|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=377bp
MATLPDSIGGWAALKTLDLSFCGELASLPDSICDLAALTRFDLTGCVTLA
ALPDGIGRLRELTMLYLTGCWSLTSLPGSIGHLTSLMDFELDACTALTGL
PDSVVNLAALTRLNLNFSTALATLPHRIGDLAALKALFLCECDNLERLPD
STGDLALLQVLKLADAGISSLPHTIGNLSSLTQLDLRYMRFTGLPDGICG
LTALVSLDLTESALTALPEGIGALAALTHLILKCCPQLAALPDSIGDLAA
LVYLDAHGCGALTRLPDGMGRARTLRALLLGSCTRLAELPGSLCDLVALE
RLDLSACELLTHLPERMGELVRLTSLDLTGCSGLLSLPGGLRTLRRLPRI
DVVGCADAVRLQAKTPLQDDDFDASK*

mRNA from alignment at Contig_152:114061..115191+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15006 ID=mRNA_15006|Name=jgi.p|Trimin1|177479|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_152:114061..115191+ (Tribonema minus UTEX_B_3156 )
ATGGCGACGCTGCCTGACAGCATCGGAGGCTGGGCGGCGCTGAAAACGCT
GGACCTCAGCTTTTGCGGCGAGCTCGCGAGCCTGCCAGACAGCATCTGCG
ACCTGGCCGCACTCACGAGGTTCGACCTTACCGGCTGTGTCACCCTGGCA
GCGCTCCCCGACGGCATCGGGCGCCTGCGCGAGCTGACCATGCTGTACCT
GACTGGCTGCTGGTCGCTCACCAGCTTGCCCGGCAGCATCGGCCATCTGA
CGTCGCTGATGGACTTCGAGCTGGACGCATGCACTGCGCTCACCGGACTA
CCCGACAGTGTCGTCAATCTGGCCGCGCTGACGCGACTGAACCTAAACTT
CAGCACCGCGCTCGCCACCCTGCCGCACCGCATCGGGGACCTGGCAGCGC
TCAAAGCGCTCTTCCTTTGCGAGTGCGACAACCTGGAAAGGTTGCCGGAC
AGCACTGGCGACCTGGCGCTGCTGCAGGTGCTCAAGCTGGCGGATGCGGG
CATCTCGTCGCTGCCGCACACCATCGGCAACCTATCGTCACTGACCCAGC
TGGACCTCCGCTACATGCGCTTCACCGGTCTGCCGGACGGCATCTGCGGT
CTGACGGCGCTGGTCAGCCTCGACCTGACCGAAAGCGCGCTCACGGCGCT
GCCGGAGGGCATCGGCGCGCTGGCGGCGCTGACGCATCTCATCCTCAAGT
GCTGCCCGCAGCTTGCCGCCCTGCCGGACTCCATCGGCGACCTCGCGGCA
CTGGTCTACCTCGACGCGCACGGCTGCGGAGCGCTGACGCGGTTGCCAGA
CGGCATGGGCCGCGCGCGGACCTTGAGAGCGCTTCTGCTGGGGTCATGCA
CGCGTCTCGCAGAACTGCCGGGCTCCCTCTGCGACCTGGTGGCGCTAGAG
CGGCTCGACCTCAGCGCCTGCGAGCTCCTGACGCATCTTCCGGAGCGCAT
GGGCGAGCTGGTGCGGCTCACGTCGCTCGACCTGACCGGCTGCAGCGGAC
TGCTGAGCCTGCCGGGCGGGCTGCGGACGCTGCGCCGGCTCCCGCGCATC
GACGTCGTGGGCTGCGCGGATGCCGTTCGGCTGCAGGCGAAGACGCCCTT
GCAGGACGACGATTTTGATGCCTCGAAGTAA

Coding sequence (CDS) from alignment at Contig_152:114061..115191+

>mRNA_15006 ID=mRNA_15006|Name=jgi.p|Trimin1|177479|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1131bp|location=Sequence derived from alignment at Contig_152:114061..115191+ (Tribonema minus UTEX_B_3156 )
ATGGCGACGCTGCCTGACAGCATCGGAGGCTGGGCGGCGCTGAAAACGCT
GGACCTCAGCTTTTGCGGCGAGCTCGCGAGCCTGCCAGACAGCATCTGCG
ACCTGGCCGCACTCACGAGGTTCGACCTTACCGGCTGTGTCACCCTGGCA
GCGCTCCCCGACGGCATCGGGCGCCTGCGCGAGCTGACCATGCTGTACCT
GACTGGCTGCTGGTCGCTCACCAGCTTGCCCGGCAGCATCGGCCATCTGA
CGTCGCTGATGGACTTCGAGCTGGACGCATGCACTGCGCTCACCGGACTA
CCCGACAGTGTCGTCAATCTGGCCGCGCTGACGCGACTGAACCTAAACTT
CAGCACCGCGCTCGCCACCCTGCCGCACCGCATCGGGGACCTGGCAGCGC
TCAAAGCGCTCTTCCTTTGCGAGTGCGACAACCTGGAAAGGTTGCCGGAC
AGCACTGGCGACCTGGCGCTGCTGCAGGTGCTCAAGCTGGCGGATGCGGG
CATCTCGTCGCTGCCGCACACCATCGGCAACCTATCGTCACTGACCCAGC
TGGACCTCCGCTACATGCGCTTCACCGGTCTGCCGGACGGCATCTGCGGT
CTGACGGCGCTGGTCAGCCTCGACCTGACCGAAAGCGCGCTCACGGCGCT
GCCGGAGGGCATCGGCGCGCTGGCGGCGCTGACGCATCTCATCCTCAAGT
GCTGCCCGCAGCTTGCCGCCCTGCCGGACTCCATCGGCGACCTCGCGGCA
CTGGTCTACCTCGACGCGCACGGCTGCGGAGCGCTGACGCGGTTGCCAGA
CGGCATGGGCCGCGCGCGGACCTTGAGAGCGCTTCTGCTGGGGTCATGCA
CGCGTCTCGCAGAACTGCCGGGCTCCCTCTGCGACCTGGTGGCGCTAGAG
CGGCTCGACCTCAGCGCCTGCGAGCTCCTGACGCATCTTCCGGAGCGCAT
GGGCGAGCTGGTGCGGCTCACGTCGCTCGACCTGACCGGCTGCAGCGGAC
TGCTGAGCCTGCCGGGCGGGCTGCGGACGCTGCGCCGGCTCCCGCGCATC
GACGTCGTGGGCTGCGCGGATGCCGTTCGGCTGCAGGCGAAGACGCCCTT
GCAGGACGACGATTTTGATGCCTCGAAGTAA