mRNA_14995 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177476
Unique NamemRNA_14995
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: A0A835ZH97_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH97_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.620e-54
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 MRALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRLE 261
            MRALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRLE
Sbjct:    1 MRALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRLE 87
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.290e-15
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    4 RALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRL 258
            RALVRY+A  P +  FR PVD  ++  Y   V +P DLR +DRRL+A EYG+S      DVR V+RN + +N  GSE++ AA +L
Sbjct:  743 RALVRYLATAPESMAFRRPVDTTVFTDYHKFVEDPCDLRTIDRRLEASEYGQSVVRFANDVRLVWRNGKRYNKEGSEVWSAADKL 827
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.320e-10
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   49 FRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRL 258
            FR PVD  ++  Y   V +P DLR +DRRL+A EYG+S      DVR V+RN + +N  GSE++ AA +L
Sbjct:    3 FRRPVDTTVFTDYHKFVEDPCDLRTIDRRLEASEYGQSVVRFANDVRLVWRNGKRYNKEGSEVWNAADKL 72
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: A0A388M0G4_CHABU (Histone acetyltransferase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M0G4_CHABU)

HSP 1 Score: 62.4 bits (150), Expect = 2.080e-9
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   37 NAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRLE 261
            N+ PF+ PVD    P Y  ++T+P+DLR V +RLD  +Y  + +    D++R+F NAR +N P +  Y  A+RLE
Sbjct:  486 NSWPFKDPVDSREVPDYYDIITDPIDLRTVSKRLDTEQYYITLEIFAADLKRMFANARTYNAPETIYYKCANRLE 560
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: A0A4P9XCS8_9FUNG (Uncharacterized protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XCS8_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 2.990e-9
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:    1 MRALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIY 240
            + A+V+ + + P+A PF  PVDV+L P+Y AV+  PMDL  V  RL AR+   +  A    +  VFRN  LFN P   IY
Sbjct:  547 LEAMVKRLQKHPSAWPFLEPVDVQLVPEYVAVIDTPMDLGTVAARLAARDTYATPDACADAILLVFRNCFLFNPPSHPIY 626
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: A0A200Q4G2_9MAGN (Histone acetyltransferase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q4G2_9MAGN)

HSP 1 Score: 60.8 bits (146), Expect = 7.220e-9
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 MRALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRLE 261
            M  L++ + + P+A PF+ PVD    P Y  V+ +P+DLR + +RL++ +Y  + +  + DV+R+F NA  +N P +  +  A RLE
Sbjct:  441 MHTLLKMMHENPDAWPFKEPVDARDVPDYYDVIKDPVDLRTLSKRLESGQYYVTLEMFVADVKRMFANAHTYNSPETIYHKCATRLE 527
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: A0A8B7DFX3_HYDVU (PH-interacting protein-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DFX3_HYDVU)

HSP 1 Score: 58.9 bits (141), Expect = 3.500e-8
Identity = 30/86 (34.88%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    4 RALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPG-SEIYGAAHRL 258
            + L+ ++A + +AAPFR PVD EL+P Y +V+ +P+DL  + +RLD+ +Y  + ++ ++D + +F+N++ +     S IY    RL
Sbjct:  483 KTLLEFIALKDDAAPFREPVDTELFPDYLSVIHDPIDLSTIRQRLDSNQYDDA-ESFIRDFQLIFKNSKTYTTDRRSAIYKMTLRL 567
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: T2M8W9_HYDVU (PH-interacting protein n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M8W9_HYDVU)

HSP 1 Score: 58.9 bits (141), Expect = 3.570e-8
Identity = 25/71 (35.21%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 RALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLF 216
            ++L+ ++A + +AAPFR PVD EL+P Y +V+ +P+DL  + +RLD+ +Y  + ++ ++D + +F+N++ +
Sbjct:  926 KSLLEFIALKDDAAPFREPVDTELFPDYLSVIHDPIDLSTIRQRLDSNQYDDA-ESFIRDFQLIFKNSKTY 995
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: A0A8B7D6T2_HYDVU (bromodomain and WD repeat-containing protein 3-like isoform X1 n=4 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7D6T2_HYDVU)

HSP 1 Score: 58.9 bits (141), Expect = 3.600e-8
Identity = 25/71 (35.21%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 RALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLF 216
            ++L+ ++A + +AAPFR PVD EL+P Y +V+ +P+DL  + +RLD+ +Y  + ++ ++D + +F+N++ +
Sbjct: 1315 KSLLEFIALKDDAAPFREPVDTELFPDYLSVIHDPIDLSTIRQRLDSNQYDDA-ESFIRDFQLIFKNSKTY 1384
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BLAST of jgi.p|Trimin1|177476 vs. uniprot
Match: A0A5N5SJC0_9CRUS (Nucleosome-remodeling factor subunit n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5SJC0_9CRUS)

HSP 1 Score: 58.5 bits (140), Expect = 4.910e-8
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    1 MRALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDAREYGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRLE 261
            ++ + + + Q  NA PF  PVD    P Y  VV +PMDL+AV+R++  R+Y    +  + DV  VF N R +N P S  +  A+ LE
Sbjct: 1466 LKKVAKLLIQHKNAWPFLEPVDQSEVPDYYKVVKQPMDLKAVERKVQQRKYKNLFEF-VGDVMLVFDNCRAYNPPNSSFFSCANNLE 1551
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177476 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH97_9STRA3.620e-54100.00Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
D7G5K5_ECTSI1.290e-1548.24Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8B2_9PHAE1.320e-1047.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A388M0G4_CHABU2.080e-941.33Histone acetyltransferase n=1 Tax=Chara braunii Ta... [more]
A0A4P9XCS8_9FUNG2.990e-943.75Uncharacterized protein n=1 Tax=Caulochytrium prot... [more]
A0A200Q4G2_9MAGN7.220e-935.63Histone acetyltransferase n=1 Tax=Macleaya cordata... [more]
A0A8B7DFX3_HYDVU3.500e-834.88PH-interacting protein-like n=2 Tax=Hydra vulgaris... [more]
T2M8W9_HYDVU3.570e-835.21PH-interacting protein n=1 Tax=Hydra vulgaris TaxI... [more]
A0A8B7D6T2_HYDVU3.600e-835.21bromodomain and WD repeat-containing protein 3-lik... [more]
A0A5N5SJC0_9CRUS4.910e-837.93Nucleosome-remodeling factor subunit n=2 Tax=Armad... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_152contigContig_152:42212..42472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177476|e_gw1.152.4.1
BRITEko00000,ko00001,ko01000,ko03021,ko03036
KEGG Pathwayko04330,ko04919,ko05166,ko05203,map04330,map04919,map05166,map05203
KEGG koko:K06062
EC2.3.1.48
GOsGO:0000003,GO:0000123,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004402,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009908,GO:0009987,GO:0010015,GO:0010321,GO:0010468,GO:0010484,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0048364,GO:0048367,GO:0048518,GO:0048522,GO:0048580,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090567,GO:0097159,GO:0099402,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905392,GO:1990234,GO:2000026,GO:2000112,GO:2001141
Descriptionbromo domain
COG categoryBK
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5076@1|root,KOG1472@2759|Eukaryota,37JG7@33090|Viridiplantae,3G734@35493|Streptophyta,3KQP3@4447|Liliopsida
Evalue1.22e-12
Seed ortholog42345.XP_008796076.1
Hectar predicted targeting categoryother localisation
TranscriptId177798
TrackFilteredModels1
ProteinId177476
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177476gene_14995Tribonema minus UTEX_B_3156 geneContig_152 42212..42472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14995_1exon_14995_1Tribonema minus UTEX_B_3156 exonContig_152 42212..42472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14995CDS_14995Tribonema minus UTEX_B_3156 CDSContig_152 42212..42472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177476Trimin1|177476|e_gw1.152.4.1Tribonema minus UTEX_B_3156 polypeptideContig_152 42212..42472 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14995 ID=mRNA_14995|Name=jgi.p|Trimin1|177476|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_152:42212..42472+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCGCTCGTGCGCTACGTCGCGCAGCAGCCGAACGCGGCGCCGTT
CCGGCTGCCGGTCGACGTGGAGCTGTACCCGCAGTACGCGGCCGTCGTGA
CGGAGCCGATGGACCTGCGCGCCGTCGACCGCCGCCTCGACGCGCGCGAG
TACGGGCGCTCGCACAAGGCGGCGCTCAAGGACGTGCGGCGCGTCTTCCG
CAACGCGCGCCTCTTCAACCTGCCGGGCTCCGAGATCTACGGTGCCGCGC
ACCGCCTCGAG
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protein sequence of jgi.p|Trimin1|177476

>Trimin1|177476|e_gw1.152.4.1 ID=Trimin1|177476|e_gw1.152.4.1|Name=jgi.p|Trimin1|177476|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
MRALVRYVAQQPNAAPFRLPVDVELYPQYAAVVTEPMDLRAVDRRLDARE
YGRSHKAALKDVRRVFRNARLFNLPGSEIYGAAHRLE
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mRNA from alignment at Contig_152:42212..42472+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14995 ID=mRNA_14995|Name=jgi.p|Trimin1|177476|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_152:42212..42472+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCGCTCGTGCGCTACGTCGCGCAGCAGCCGAACGCGGCGCCGTT
CCGGCTGCCGGTCGACGTGGAGCTGTACCCGCAGTACGCGGCCGTCGTGA
CGGAGCCGATGGACCTGCGCGCCGTCGACCGCCGCCTCGACGCGCGCGAG
TACGGGCGCTCGCACAAGGCGGCGCTCAAGGACGTGCGGCGCGTCTTCCG
CAACGCGCGCCTCTTCAACCTGCCGGGCTCCGAGATCTACGGTGCCGCGC
ACCGCCTCGAG
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Coding sequence (CDS) from alignment at Contig_152:42212..42472+

>mRNA_14995 ID=mRNA_14995|Name=jgi.p|Trimin1|177476|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_152:42212..42472+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCGCTCGTGCGCTACGTCGCGCAGCAGCCGAACGCGGCGCCGTT
CCGGCTGCCGGTCGACGTGGAGCTGTACCCGCAGTACGCGGCCGTCGTGA
CGGAGCCGATGGACCTGCGCGCCGTCGACCGCCGCCTCGACGCGCGCGAG
TACGGGCGCTCGCACAAGGCGGCGCTCAAGGACGTGCGGCGCGTCTTCCG
CAACGCGCGCCTCTTCAACCTGCCGGGCTCCGAGATCTACGGTGCCGCGC
ACCGCCTCGAG
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