mRNA_14971 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352893
Unique NamemRNA_14971
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352893 vs. uniprot
Match: A0A836CNL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL9_9STRA)

HSP 1 Score: 555 bits (1429), Expect = 1.310e-194
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 1 
Query:    1 MGGHGASARGALRLDQLTAADRSSRREARRLGLLNEDEEWSDDEGGKQGGQEEADXXXXXXXQQLAELLLREQRKRHLGLSERTQQVLYESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMAEVEEERRNSQPSSLGIQLDQESQDVLCLLQCTNSIGNGGSRAIVASVAAARSNTAPLKRAYSXXXXXXXXGLPXXXXXXXXXXXXXSAAPAAAPNRSRXXXXGSAPLPQKGGALQRSTTLPGGAQVGGFAALIARKGVAGVGARAGSFKRCNAMAAGRKTVVSGMQFVYMTGEDSLSNAGPLDDEPASFDSSKSSKSKTAYGGLKRAHSDGSGGPNSKKQQRSGPSLMGKLWNGLGAKTSALKATQTLHKDNRAVSK 1188
            MGGHGASARGALRLDQLTAADRSSRREARRLGLLNEDEEWSDDEGGKQGGQEEADXXXXXXXQQLAELLLREQRKRHLGLSERTQQVLYESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMAEVEEERRNSQPSSLGIQLDQESQDVLCLLQCTNSIGNGGSRAIVASVAAARSNTAPLKRAYSXXXXXXXXGLPXXXXXXXXXXXXXSAAPAAAPNRSRXXXXGSAPLPQKGGALQRSTTLPGGAQVGGFAALIARKGVAGVGARAGSFKRCNAMAAGRKTVVSGMQFVYMTGEDSLSNAGPLDDEPASFDSSKSSKSKTAYGGLKRAHSDGSGGPNSKKQQRSGPSLMGKLWNGLGAKTSALKATQTLHKDNRAVSK
Sbjct:    1 MGGHGASARGALRLDQLTAADRSSRREARRLGLLNEDEEWSDDEGGKQGGQEEADXXXXXXXQQLAELLLREQRKRHLGLSERTQQVLYESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMAEVEEERRNSQPSSLGIQLDQESQDVLCLLQCTNSIGNGGSRAIVASVAAARSNTAPLKRAYSXXXXXXXXGLPXXXXXXXXXXXXXSAAPAAAPNRSRXXXXGSAPLPQKGGALQRSTTLPGGAQVGGFAALIARKGVAGVGARAGSFKRCNAMAAGRKTVVSGMQFVYMTGEDSLSNAGPLDDEPASFDSSKSSKSKTAYGGLKRAHSDGSGGPNSKKQQRSGPSLMGKLWNGLGAKTSALKATQTLHKDNRAVSK 396
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BLAST of jgi.p|Trimin1|352893 vs. uniprot
Match: D8LK00_ECTSI (DEK C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK00_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.510e-6
Identity = 89/174 (51.15%), Postives = 103/174 (59.20%), Query Frame = 1 
Query:    7 GHGASARGALRLDQLTAADRSSRREARRLGLLNEDEEWSDDEGGKQGGQEEADXXXXXXXQQLAELLL-REQRKRHLGLSERTQQVLYESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMAEVEEERR--NSQPSSLGIQLDQESQDVLCLLQCTNS 519
            G G +ARG LRLD+LT AD+S+R EARRLGLLN DEEWS              XXXXXXX       L REQR RH+GLS+   + L  S    XXXXXXXXXXXXXXXXXXXXX                    V+AEVE+     +SQ   L +Q D++SQ +L LLQCTNS
Sbjct: 1493 GRGGNARGNLRLDELTRADKSTRGEARRLGLLNSDEEWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAREQRARHMGLSQSAVECLASSESEGXXXXXXXXXXXXXXXXXXXXXRREEARVQKLWVKRAKRRR-VLAEVEQSAAGGDSQGPELLMQEDEDSQAILSLLQCTNS 1665
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BLAST of jgi.p|Trimin1|352893 vs. uniprot
Match: A0A6H5KTL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.140e-6
Identity = 89/174 (51.15%), Postives = 104/174 (59.77%), Query Frame = 1 
Query:    7 GHGASARGALRLDQLTAADRSSRREARRLGLLNEDEEWSDDEGGKQGGQEEADXXXXXXXQQLAEL-LLREQRKRHLGLSERTQQVLYESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMAEVEEERR--NSQPSSLGIQLDQESQDVLCLLQCTNS 519
            G G +ARG LRLD+LT AD+S+R EA RLGLLN DEEWS              XXXXXXX       L+REQR RH+GLS+   + L ES   XXXXXXXXXXXXXXXXXXXXXX                    V+AEVE+     +SQ     +Q D++SQ +L LLQCTNS
Sbjct: 1559 GRGGNARGNLRLDELTRADKSTRGEAARLGLLNSDEEWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVREQRARHMGLSQTAVECL-ESSESXXXXXXXXXXXXXXXXXXXXXXDRREEARVQKLWVKRAKRRRVLAEVEQSAAGGDSQGPEFLMQEDEDSQAILSLLQCTNS 1731
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352893 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CNL9_9STRA1.310e-194100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LK00_ECTSI3.510e-651.15DEK C-terminal domain-containing protein n=1 Tax=E... [more]
A0A6H5KTL5_9PHAE6.140e-651.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_135contigContig_135:296113..297908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352893|estExt_Genemark1.C_Ctg_1350031
Max annot lvl2759|Eukaryota
EggNOG OGs28NH7@1|root,2QV2P@2759|Eukaryota
Evalue4e-07
Seed ortholog2880.D8LK00
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEK, C-terminal
Ec32 orthologEc-06_007630.1
TranscriptId353215
TrackFilteredModels1
ProteinId352893
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352893gene_14971Tribonema minus UTEX_B_3156 geneContig_135 296113..297908 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14971_2exon_14971_2Tribonema minus UTEX_B_3156 exonContig_135 296113..297076 -
exon_14971_1exon_14971_1Tribonema minus UTEX_B_3156 exonContig_135 297483..297908 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14971UTR3_14971Tribonema minus UTEX_B_3156 three_prime_UTRContig_135 296113..296311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14971CDS_14971Tribonema minus UTEX_B_3156 CDSContig_135 297483..297908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352893Trimin1|352893|estExt_Genemark1.C_Ctg_1350031Tribonema minus UTEX_B_3156 polypeptideContig_135 296312..297908 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14971 ID=mRNA_14971|Name=jgi.p|Trimin1|352893|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1390bp|location=Sequence derived from alignment at Contig_135:296113..297908- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGCCACGGCGCCTCTGCGCGCGGCGCGCTCCGCCTGGACCAGCT
CACAGCGGCGGACCGCAGCAGCAGACGCGAGGCGCGGCGCCTGGGCCTGC
TGAACGAAGATGAGGAGTGGTCCGATGACGAGGGGGGCAAGCAGGGGGGA
CAGGAGGAAGCGGACGAGCTCGATGAGATGGACGAGCAGCAGCTTGCTGA
GCTGCTGCTGCGGGAGCAGCGCAAGCGCCACCTGGGCCTGAGCGAGCGCA
CGCAACAGGTGCTGTACGAGAGCAGCGACGACGACAGCGCCGGAGGCGGG
GGCGGCGGCGGCGCTGGCGGTGGGGAGGGTGGCGAGGAGAAAGATGAGGA
GGCGTTGGCGGAGGAGAGGATGCTGCGGCAGTGGCGGCGGCGCGCCAAGA
TGCGGCGCGTGATGGCGGAGGTGGAGGAGGAGCGACGCAACAGCCAGCCC
AGCAGCCTTGGCATTCAGCTCGACCAGGAAAGCCAGGATGTTCTGTGCCT
GCTGCAGTGCACCAACAGCATAGGCAACGGTGGCAGCCGCGCCATTGTGG
CAAGTGTAGCAGCTGCGCGCAGCAACACAGCGCCGCTTAAGCGCGCTTAC
AGCAGCAGCAGCGGCGGCGGCGGCGGTGGACTGCCGCCGCTGAAGCGTGC
GTACAGCAGCAGCAGCGGCGCTGGCAGTGCTGCGCCGGCAGCAGCACCCA
ACCGGTCGAGAAGCGGCAGCGGCGGCAGCGCACCGTTGCCGCAGAAAGGC
GGTGCGTTGCAGCGCTCAACCACCCTGCCGGGGGGTGCGCAGGTGGGGGG
TTTTGCAGCGCTCATCGCACGGAAGGGGGTGGCGGGGGTTGGCGCACGTG
CAGGCTCCTTCAAGCGCTGCAACGCCATGGCCGCAGGGCGCAAGACGGTC
GTGAGTGGCATGCAGTTTGTGTATATGACGGGGGAGGACTCTCTGAGCAA
TGCGGGGCCCCTTGACGACGAGCCTGCCTCCTTCGACAGCAGCAAGAGCT
CCAAGAGCAAAACCGCGTACGGGGGGCTGAAGCGGGCGCACTCAGACGGG
AGCGGCGGCCCCAACAGCAAGAAGCAGCAGCGCTCAGGGCCTTCTCTGAT
GGGAAAGCTGTGGAACGGTCTCGGGGCAAAGACTTCGGCGCTGAAGGCAA
CGCAGACGTTGCACAAGGACAACCGCGCCGTGTCAAAGTAGCGTGGCATG
TGCAGGCGTTGGCGCTACGCTTGTAGCTGCGTGTAGTAGAAGTATATGAG
TGCGCATGCGGAGGTGCTGTGATGCGCGCGTGTTGTGGGTTGGGAATTGG
CATGCTGCCATGCATGGGCAAGTGTAGTGCAATAGAACGCAATGTAATTG
AACGCCGTTGGTGAGACAAAATGCATCTTGATTTGTGCCC
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protein sequence of jgi.p|Trimin1|352893

>Trimin1|352893|estExt_Genemark1.C_Ctg_1350031 ID=Trimin1|352893|estExt_Genemark1.C_Ctg_1350031|Name=jgi.p|Trimin1|352893|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=397bp
MGGHGASARGALRLDQLTAADRSSRREARRLGLLNEDEEWSDDEGGKQGG
QEEADELDEMDEQQLAELLLREQRKRHLGLSERTQQVLYESSDDDSAGGG
GGGGAGGGEGGEEKDEEALAEERMLRQWRRRAKMRRVMAEVEEERRNSQP
SSLGIQLDQESQDVLCLLQCTNSIGNGGSRAIVASVAAARSNTAPLKRAY
SSSSGGGGGGLPPLKRAYSSSSGAGSAAPAAAPNRSRSGSGGSAPLPQKG
GALQRSTTLPGGAQVGGFAALIARKGVAGVGARAGSFKRCNAMAAGRKTV
VSGMQFVYMTGEDSLSNAGPLDDEPASFDSSKSSKSKTAYGGLKRAHSDG
SGGPNSKKQQRSGPSLMGKLWNGLGAKTSALKATQTLHKDNRAVSK*
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mRNA from alignment at Contig_135:296113..297908-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14971 ID=mRNA_14971|Name=jgi.p|Trimin1|352893|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1796bp|location=Sequence derived from alignment at Contig_135:296113..297908- (Tribonema minus UTEX_B_3156 )
ATGGGCGGCCACGGCGCCTCTGCGCGCGGCGCGCTCCGCCTGGACCAGCT
CACAGCGGCGGACCGCAGCAGCAGACGCGAGGCGCGGCGCCTGGGCCTGC
TGAACGAAGATGAGGAGTGGTCCGATGACGAGGGGGGCAAGCAGGGGGGA
CAGGAGGAAGCGGACGAGCTCGATGAGATGGACGAGCAGCAGCTTGCTGA
GCTGCTGCTGCGGGAGCAGCGCAAGCGCCACCTGGGCCTGAGCGAGCGCA
CGCAACAGGTGCTGTACGAGAGCAGCGACGACGACAGCGCCGGAGGCGGG
GGCGGCGGCGGCGCTGGCGGTGGGGAGGGTGGCGAGGAGAAAGATGAGGA
GGCGTTGGCGGAGGAGAGGATGCTGCGGCAGTGGCGGCGGCGCGCCAAGA
TGCGGCGCGTGATGGCGGAGGTGGAGGTGAGCTATGCGGGGCGTTGAGGC
CTGACGTAACTGCTGCGTTTGACTGACCTGTCCTGAGCCCTCAGTGGGGC
CACGTTCAACTAGCTACTGTAGTGTGTGGCTGACAAGCAAGGCCCTTGGG
CTGACTGATTTGAAGAATAAACGCTCATTGGGTTTGGTGTAGAACTTGCA
GCTTCGGGTAGGGTGTTGGGGACAGCAGTGGTTGAGTGAAGGCGCGCCTT
GACGACAGGGGTAACAGTGACCGCTGCACACGATCTGGAGCTGCACTGTG
CATGATGCTGGCATCAGTGCGACACGTGTGGAAGCATGGCACCGAGCAGA
TGTTGGTGAGCACACATGTTGGAACTAAAAACTGCCTGTATGCGTACTGA
GCAATGCTGGTTTGCATTCGTGTGTCTTGCAGGAGGAGCGACGCAACAGC
CAGCCCAGCAGCCTTGGCATTCAGCTCGACCAGGAAAGCCAGGATGTTCT
GTGCCTGCTGCAGTGCACCAACAGCATAGGCAACGGTGGCAGCCGCGCCA
TTGTGGCAAGTGTAGCAGCTGCGCGCAGCAACACAGCGCCGCTTAAGCGC
GCTTACAGCAGCAGCAGCGGCGGCGGCGGCGGTGGACTGCCGCCGCTGAA
GCGTGCGTACAGCAGCAGCAGCGGCGCTGGCAGTGCTGCGCCGGCAGCAG
CACCCAACCGGTCGAGAAGCGGCAGCGGCGGCAGCGCACCGTTGCCGCAG
AAAGGCGGTGCGTTGCAGCGCTCAACCACCCTGCCGGGGGGTGCGCAGGT
GGGGGGTTTTGCAGCGCTCATCGCACGGAAGGGGGTGGCGGGGGTTGGCG
CACGTGCAGGCTCCTTCAAGCGCTGCAACGCCATGGCCGCAGGGCGCAAG
ACGGTCGTGAGTGGCATGCAGTTTGTGTATATGACGGGGGAGGACTCTCT
GAGCAATGCGGGGCCCCTTGACGACGAGCCTGCCTCCTTCGACAGCAGCA
AGAGCTCCAAGAGCAAAACCGCGTACGGGGGGCTGAAGCGGGCGCACTCA
GACGGGAGCGGCGGCCCCAACAGCAAGAAGCAGCAGCGCTCAGGGCCTTC
TCTGATGGGAAAGCTGTGGAACGGTCTCGGGGCAAAGACTTCGGCGCTGA
AGGCAACGCAGACGTTGCACAAGGACAACCGCGCCGTGTCAAAGTAGCGT
GGCATGTGCAGGCGTTGGCGCTACGCTTGTAGCTGCGTGTAGTAGAAGTA
TATGAGTGCGCATGCGGAGGTGCTGTGATGCGCGCGTGTTGTGGGTTGGG
AATTGGCATGCTGCCATGCATGGGCAAGTGTAGTGCAATAGAACGCAATG
TAATTGAACGCCGTTGGTGAGACAAAATGCATCTTGATTTGTGCCC
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Coding sequence (CDS) from alignment at Contig_135:296113..297908-

>mRNA_14971 ID=mRNA_14971|Name=jgi.p|Trimin1|352893|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1191bp|location=Sequence derived from alignment at Contig_135:296113..297908- (Tribonema minus UTEX_B_3156 )
ATGGGCGGCCACGGCGCCTCTGCGCGCGGCGCGCTCCGCCTGGACCAGCT
CACAGCGGCGGACCGCAGCAGCAGACGCGAGGCGCGGCGCCTGGGCCTGC
TGAACGAAGATGAGGAGTGGTCCGATGACGAGGGGGGCAAGCAGGGGGGA
CAGGAGGAAGCGGACGAGCTCGATGAGATGGACGAGCAGCAGCTTGCTGA
GCTGCTGCTGCGGGAGCAGCGCAAGCGCCACCTGGGCCTGAGCGAGCGCA
CGCAACAGGTGCTGTACGAGAGCAGCGACGACGACAGCGCCGGAGGCGGG
GGCGGCGGCGGCGCTGGCGGTGGGGAGGGTGGCGAGGAGAAAGATGAGGA
GGCGTTGGCGGAGGAGAGGATGCTGCGGCAGTGGCGGCGGCGCGCCAAGA
TGCGGCGCGTGATGGCGGAGGTGGAGGAGGAGCGACGCAACAGCCAGCCC
AGCAGCCTTGGCATTCAGCTCGACCAGGAAAGCCAGGATGTTCTGTGCCT
GCTGCAGTGCACCAACAGCATAGGCAACGGTGGCAGCCGCGCCATTGTGG
CAAGTGTAGCAGCTGCGCGCAGCAACACAGCGCCGCTTAAGCGCGCTTAC
AGCAGCAGCAGCGGCGGCGGCGGCGGTGGACTGCCGCCGCTGAAGCGTGC
GTACAGCAGCAGCAGCGGCGCTGGCAGTGCTGCGCCGGCAGCAGCACCCA
ACCGGTCGAGAAGCGGCAGCGGCGGCAGCGCACCGTTGCCGCAGAAAGGC
GGTGCGTTGCAGCGCTCAACCACCCTGCCGGGGGGTGCGCAGGTGGGGGG
TTTTGCAGCGCTCATCGCACGGAAGGGGGTGGCGGGGGTTGGCGCACGTG
CAGGCTCCTTCAAGCGCTGCAACGCCATGGCCGCAGGGCGCAAGACGGTC
GTGAGTGGCATGCAGTTTGTGTATATGACGGGGGAGGACTCTCTGAGCAA
TGCGGGGCCCCTTGACGACGAGCCTGCCTCCTTCGACAGCAGCAAGAGCT
CCAAGAGCAAAACCGCGTACGGGGGGCTGAAGCGGGCGCACTCAGACGGG
AGCGGCGGCCCCAACAGCAAGAAGCAGCAGCGCTCAGGGCCTTCTCTGAT
GGGAAAGCTGTGGAACGGTCTCGGGGCAAAGACTTCGGCGCTGAAGGCAA
CGCAGACGTTGCACAAGGACAACCGCGCCGTGTCAAAGTAG
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