mRNA_14937 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139990
Unique NamemRNA_14937
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: A0A835YI91_9STRA (SP-RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI91_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.400e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 IVIMNAGDEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            IVIMNAGDEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE
Sbjct:    1 IVIMNAGDEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 54
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BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: D8LQR5_ECTSI (Similar to retinoic acid induced 17, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.600e-17
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   22 DEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            D++LMAT+TRLSLRCPLGLVPI  P RGR C HLQCFD+ TFLSFN+
Sbjct:  314 DDDLMATATRLSLRCPLGLVPITCPGRGRYCKHLQCFDLNTFLSFNK 360
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BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: A0A6H5KI42_9PHAE (SP-RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI42_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.600e-17
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   22 DEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            D++LMAT+TRLSLRCPLGLVPI  P RGR C HLQCFD+ TFLSFN+
Sbjct:  364 DDDLMATATRLSLRCPLGLVPITCPGRGRYCKHLQCFDLNTFLSFNK 410
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BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: A0A7S2FT40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FT40_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.640e-17
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   22 DEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            DE++ A STRLS+RCP+GL PI +P RGRGC HLQCFD+ TFL  N+
Sbjct:    7 DEDVTAASTRLSVRCPIGLGPIGIPVRGRGCTHLQCFDLVTFLQMNK 53
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BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: W7TGK7_9STRA (Sumo ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGK7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-15
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   22 DEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            D ELMAT TRLSLRCPLG+ PI +PARG  C HLQCFD+ TFL +NE
Sbjct:  435 DGELMATVTRLSLRCPLGMTPIRIPARGTDCHHLQCFDLDTFLRYNE 481
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BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: A0A485LNC0_9STRA (Aste57867_23638 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNC0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-12
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 VIMNAGDEE---LMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            VI + GDE+   ++AT T LSLRCPLGL  I +PARG  C HLQCFD+ TFL FN 
Sbjct:  370 VIKSFGDEDDDDIVATCTMLSLRCPLGLCVIELPARGIHCKHLQCFDLKTFLMFNR 425
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BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: A0A1V9Z221_9STRA (SUMO ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z221_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.670e-12
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   22 DEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            D++++AT T LS+RCPLGL  I +PARG  C HLQCFD+ TFL FN+
Sbjct:  371 DDDIVATCTMLSVRCPLGLSVIELPARGVHCQHLQCFDLKTFLMFNK 417
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BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: A0A3R7AMH3_9STRA (SP-RING-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AMH3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.820e-12
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   22 DEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            D++++AT T LS+RCPLGL  I +PARG  C HLQCFD+ TFL FN 
Sbjct:  152 DDDIVATCTMLSVRCPLGLCVIDLPARGIHCQHLQCFDLKTFLLFNR 198
[Close]
BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: A0A3L6V507_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V507_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.840e-12
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   22 DEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            D++++AT T LS+RCPLGL  I +PARG  C HLQCFD+ TFL FN 
Sbjct:  390 DDDIVATCTMLSVRCPLGLCVIDLPARGIHCQHLQCFDLKTFLLFNR 436
[Close]
BLAST of jgi.p|Trimin1|139990 vs. uniprot
Match: W4H157_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H157_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.850e-12
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   22 DEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFLSFNE 162
            D++++AT T LS+RCPLGL  I +PARG  C HLQCFD+ TFL FN 
Sbjct:  390 DDDIVATCTMLSVRCPLGLCVIDLPARGIHCQHLQCFDLKTFLLFNR 436
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139990 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YI91_9STRA1.400e-32100.00SP-RING-type domain-containing protein (Fragment) ... [more]
D8LQR5_ECTSI2.600e-1776.60Similar to retinoic acid induced 17, partial n=1 T... [more]
A0A6H5KI42_9PHAE2.600e-1776.60SP-RING-type domain-containing protein n=1 Tax=Ect... [more]
A0A7S2FT40_9STRA5.640e-1765.96Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
W7TGK7_9STRA1.100e-1572.34Sumo ligase n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A485LNC0_9STRA1.050e-1260.71Aste57867_23638 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z221_9STRA3.670e-1261.70SUMO ligase n=1 Tax=Achlya hypogyna TaxID=1202772 ... [more]
A0A3R7AMH3_9STRA6.820e-1261.70SP-RING-type domain-containing protein (Fragment) ... [more]
A0A3L6V507_9STRA6.840e-1261.70Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
W4H157_9STRA6.850e-1261.70Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_98contigContig_98:546212..546373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139990|gw1.98.9.1
BRITEko00000,ko00001,ko01000,ko03021,ko04121,ko04812
KEGG Pathwayko04120,ko04630,ko05160,map04120,map04630,map05160
KEGG koko:K04706,ko:K10706,ko:K16063,ko:K22403
GOsGO:0000003,GO:0000902,GO:0001101,GO:0002682,GO:0002683,GO:0002831,GO:0002832,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0006935,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009267,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009553,GO:0009593,GO:0009605,GO:0009628,GO:0009653,GO:0009787,GO:0009791,GO:0009826,GO:0009856,GO:0009908,GO:0009909,GO:0009910,GO:0009966,GO:0009987,GO:0009991,GO:0010035,GO:0010112,GO:0010113,GO:0010183,GO:0010247,GO:0010286,GO:0010337,GO:0010565,GO:0010646,GO:0010817,GO:0016036,GO:0016043,GO:0016049,GO:0016740,GO:0016925,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0022414,GO:0023051,GO:0031323,GO:0031347,GO:0031348,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032102,GO:0032350,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0033554,GO:0035670,GO:0036211,GO:0040007,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044706,GO:0045088,GO:0045824,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048519,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0048868,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050826,GO:0050896,GO:0050918,GO:0051093,GO:0051171,GO:0051239,GO:0051241,GO:0051301,GO:0051606,GO:0051704,GO:0051716,GO:0060560,GO:0061458,GO:0061659,GO:0061665,GO:0062012,GO:0065007,GO:0065008,GO:0070647,GO:0071496,GO:0071704,GO:0071840,GO:0080134,GO:0090352,GO:0090567,GO:0099402,GO:0140096,GO:1901419,GO:1901564,GO:1901700,GO:1903314,GO:1905957,GO:2000026,GO:2000070,GO:2000241,GO:2000242
Preferred nameSIZ1
DescriptionSUMO transferase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2169@1|root,KOG2169@2759|Eukaryota
Evalue4.27e-18
Seed ortholog2880.D8LQR5
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId140312
TrackFilteredModels1
ProteinId139990
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139990gene_14937Tribonema minus UTEX_B_3156 geneContig_98 546212..546373 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14937_1exon_14937_1Tribonema minus UTEX_B_3156 exonContig_98 546212..546373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14937CDS_14937Tribonema minus UTEX_B_3156 CDSContig_98 546212..546373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139990Trimin1|139990|gw1.98.9.1Tribonema minus UTEX_B_3156 polypeptideContig_98 546212..546373 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14937 ID=mRNA_14937|Name=jgi.p|Trimin1|139990|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=162bp|location=Sequence derived from alignment at Contig_98:546212..546373+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGTCATTATGAATGCAGGCGATGAGGAGCTGATGGCGACGTCTACGCG
CCTGTCGCTGCGCTGCCCGCTGGGGCTGGTCCCCATTGCGGTGCCGGCGC
GCGGGCGCGGCTGCGCGCACCTCCAGTGCTTCGACATGGCGACGTTCCTC
AGCTTCAACGAG
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protein sequence of jgi.p|Trimin1|139990

>Trimin1|139990|gw1.98.9.1 ID=Trimin1|139990|gw1.98.9.1|Name=jgi.p|Trimin1|139990|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=54bp
IVIMNAGDEELMATSTRLSLRCPLGLVPIAVPARGRGCAHLQCFDMATFL
SFNE
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mRNA from alignment at Contig_98:546212..546373+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14937 ID=mRNA_14937|Name=jgi.p|Trimin1|139990|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=162bp|location=Sequence derived from alignment at Contig_98:546212..546373+ (Tribonema minus UTEX_B_3156 )
ATCGTCATTATGAATGCAGGCGATGAGGAGCTGATGGCGACGTCTACGCG
CCTGTCGCTGCGCTGCCCGCTGGGGCTGGTCCCCATTGCGGTGCCGGCGC
GCGGGCGCGGCTGCGCGCACCTCCAGTGCTTCGACATGGCGACGTTCCTC
AGCTTCAACGAG
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Coding sequence (CDS) from alignment at Contig_98:546212..546373+

>mRNA_14937 ID=mRNA_14937|Name=jgi.p|Trimin1|139990|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=162bp|location=Sequence derived from alignment at Contig_98:546212..546373+ (Tribonema minus UTEX_B_3156 )
ATCGTCATTATGAATGCAGGCGATGAGGAGCTGATGGCGACGTCTACGCG
CCTGTCGCTGCGCTGCCCGCTGGGGCTGGTCCCCATTGCGGTGCCGGCGC
GCGGGCGCGGCTGCGCGCACCTCCAGTGCTTCGACATGGCGACGTTCCTC
AGCTTCAACGAG
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