mRNA_14920 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A835YI75_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI75_9STRA) HSP 1 Score: 802 bits (2072), Expect = 2.940e-293 Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = 1 Query: 1 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVPGMVVPLDSTPGDPTAVTLSCNDVGTLAIFYRRRRTRSAVDVDSERTNAGILAAVHESVRAVLWAQRLSSRRRVGHWHTFGPRWPDSKPDWGSDANSRERCADLSRLLLALRPELSCFDVRTRGAFALSGGAELVCSYQFHLQRTGPGAQIPRGLRAAHATFKFTRCGRRRPEIDYAGLAEGLLNAPAPKLAGEACVWVLQRVALPARGDTRILEAIAAAMAVRHARRLDGDWPPAGVAVELASIARVRDPVGYGASFGMVEVPTGTHGCWLFHTPEGEGDPRAHELHVNRWQGGHWNVEFSSLGACRNCDSENEXXXXXXXXXXXXXXEDVEDGP 1221 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVPGMVVPLDSTPGDPTAVTLSCNDVGTLAIFYRRRRTRSAVDVDSERTNAGILAAVHESVRAVLWAQRLSSRRRVGHWHTFGPRWPDSKPDWGSDANSRERCADLSRLLLALRPELSCFDVRTRGAFALSGGAELVCSYQFHLQRTGPGAQIPRGLRAAHATFKFTRCGRRRPEIDYAGLAEGLLNAPAPKLAGEACVWVLQRVALPARGDTRILEAIAAAMAVRHARRLDGDWPPAGVAVELASIARVRDPVGYGASFGMVEVPTGTHGCWLFHTPEGEGDPRAHELHVNRWQGGHWNVEFSSLGACRNCDSENEXXXXXXXXXXXXXXEDVEDGP Sbjct: 1 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVPGMVVPLDSTPGDPTAVTLSCNDVGTLAIFYRRRRTRSAVDVDSERTNAGILAAVHESVRAVLWAQRLSSRRRVGHWHTFGPRWPDSKPDWGSDANSRERCADLSRLLLALRPELSCFDVRTRGAFALSGGAELVCSYQFHLQRTGPGAQIPRGLRAAHATFKFTRCGRRRPEIDYAGLAEGLLNAPAPKLAGEACVWVLQRVALPARGDTRILEAIAAAMAVRHARRLDGDWPPAGVAVELASIARVRDPVGYGASFGMVEVPTGTHGCWLFHTPEGEGDPRAHELHVNRWQGGHWNVEFSSLGACRNCDSENEXXXXXXXXXXXXXXEDVEDGP 407
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A836C6X9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6X9_9STRA) HSP 1 Score: 493 bits (1268), Expect = 5.250e-172 Identity = 255/315 (80.95%), Postives = 265/315 (84.13%), Query Frame = 1 Query: 220 MVVPLDSTPGDPTAVTLSCNDVGTLAIFYRRRRTRSAVDVDSERTNAGILAAVHESVRAVLWAQRLSSRRRVGHWHTFGPRWPDSKPDWGSDANSRERCADLSRLLLALRPELSCFDVRTRGAFALSGGAELVCSYQFHLQRTGP--GAQIPRGLRAAHATFKFTRCGRRRPEIDYAGLAEGLLNAPAPKLAGEACVWVLQRVALPARGDTRILEAIAAAMAVRHARRLDGDWPPAGVAVELASIARVRDPVGYGASFGMVEVPTGTHGCWLFHTPEGEGDPRAHELHVNRWQGGHWNVEFSSLGACRNCDSENE 1158 MVVPLDSTPGDPTAVTLS +DVG LAIFYRRRRTR AVDVDSER +AG+LAAVHESVRAVLWAQRLSSR RVGHW FGP WPDS+PD +DANSRERCA LSRLLLALRPELSCF VRTRGA ALSGGAELVC FHLQ TG A IPRGLRAA+ATF+FT GRRRPEIDYAGLA+GL NAPA + AG A VWVL+RVALPARGDTRILEAIAAAMA R ARR DGDWPPAGVAVELASIA VRDPVGYG S GMV VPTGTHG WLF TPEG A ELHV RWQ G WNVEFSS GA NCDSENE Sbjct: 1 MVVPLDSTPGDPTAVTLSPDDVGMLAIFYRRRRTRRAVDVDSERADAGMLAAVHESVRAVLWAQRLSSRGRVGHWPHFGPPWPDSEPDEWTDANSRERCAALSRLLLALRPELSCFQVRTRGALALSGGAELVCLDHFHLQCTGGRGAAAIPRGLRAANATFEFTHRGRRRPEIDYAGLADGLRNAPASEHAGVASVWVLRRVALPARGDTRILEAIAAAMAARRARRSDGDWPPAGVAVELASIAPVRDPVGYGVSLGMVRVPTGTHGFWLFRTPEGG---EAIELHVTRWQNGRWNVEFSSAGAASNCDSENE 312
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A835YJY8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJY8_9STRA) HSP 1 Score: 326 bits (836), Expect = 2.540e-106 Identity = 184/319 (57.68%), Postives = 201/319 (63.01%), Query Frame = 1 Query: 175 DRDESGAWKIARVPGMVVPLDSTPGDPTAVTLSCNDVGTLAIFYRRRRTRSAVDVDSERTNAGILAAVHESVRAVLWAQRLSSRRRVGHWHTFGPRWPDSKPDWGSDANSRERCADLSRLLLALRPELSCFDVRTRGAFALSGGAELVCSYQFHLQRTGPGAQIPRGLRAAHATFKFTRCGRRRPEIDYAGLAEGLLNAPAPKLAGEACVWVLQRVALPARGDTRILEAIAAAMAVRHARRLDGDWPPAGVAVELASIARVRDPVGYGASFGMVEVPTGTHGCWLFHTPEGEGDPRAHELHVNRWQGGHWNVEFSSLGA 1131 +RD SGAW+IARV GM+VPLDSTPGD TAVTLS +DVG L +FYRRRRTR AVDVDS NAGILAAVHES RAVLWAQ+LSSR R WH FGP WPDS + DA+S ERCA LS LLLALRPELS F+VRT A AL GGAEL + L+R GA AP + AGEA VW LQ V PA GD RILE IAA MA R A R D DW P GV VEL VRDPVGY ASFGM+E G + W F TP DPRA EL V RW+ G WN++FSSLGA Sbjct: 48 ERDVSGAWRIARVSGMIVPLDSTPGDLTAVTLSADDVGILGVFYRRRRTRRAVDVDSNNANAGILAAVHESARAVLWAQQLSSRERAACWHKFGPPWPDSGINLCMDADSHERCAFLSLLLLALRPELSRFEVRTNRALALFGGAELAA--RDRLRRPRGGA------------------------------------APESERAGEASVWALQHVDPPAPGDGRILEVIAAVMAARRAGRSDSDWQPLGVVVELRYRGPVRDPVGYAASFGMIEARMGMYDYWHFRTPA--QDPRAIELRVTRWEFGSWNIQFSSLGA 326
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A836CCW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW5_9STRA) HSP 1 Score: 194 bits (494), Expect = 2.080e-52 Identity = 156/410 (38.05%), Postives = 190/410 (46.34%), Query Frame = 1 Query: 91 RRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVPGMVVPLDSTPGDPTAVTLSCNDVGTLAIFYRRRRTRSAVDV----------DSERTNAGILAAVHESVRAVLWAQRLSSRRRVGHWHTFGPRWPDSKPDWGS--------DANSRERCADLSRLLLALRPELSCFDVR---TRGAFALSGGAELVCSYQFHL-----QRTGPGAQIPRGLRAAHATFKFTRCGRRRPEIDYAGLAEGLLNAP--APKLAGEACVWVLQRVALPARGDTRILEAIAAAMAVRHARRLDGD--WPPAGVAVELASIARVRDPVGYGASFGMV-EVPTGTHGCWLFHTP-----------EGEGDPRAHELHVNRWQGGHWNVEFSSLGA------------CRNCDSENE 1158 RRR A QRA+T + AV GDR +++ R+PG VPLD+TP DP VT++ +D+ L FY R R A DV D +AG+LAAVH SVRAVLWA R R G FG RW + +P + D +S ER A LS LL ALRP L F R + A L GA L C+ F + G A +PRG +DY LAEGL AP P + W L+ A P GD RIL AIAAAMA R ARRL G W P G+ VE ++ V DP GYG SFG E TG W F P EGE D E+ + RW G W V+F S+ A C + DSE++ Sbjct: 238 RRRELRASQRAVTPPL----TAVRDDSGDRCP---YRLPRLPGFAVPLDATPDDPAVVTVAVDDLRLLLAFYGGRTVRRAADVAARARADGDADGADGDAGLLAAVHSSVRAVLWATRGGRALRPGDRPGFG-RWLEYRPARAALSRAPLHVDVDSPERRAGLSLLLRALRPRLGRFGCRAGESAAADLLRDGARLTCNGHFTMTIRVGDAGGGRAVVPRG-------------------VDYESLAEGLAAAPDPVPPPSDLDTAWALEGAAPPEAGDGRILRAIAAAMAERRARRLAGTRKWTP-GIVVEFVNVPPVADPTGYGTSFGAAREQFTGRQDHWFFRAPSRDDDGARDRDEGEPDGGRAEILITRWHDGVWTVQFVSVAADGDEDRYHERTDCSDSDSESD 619
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A835ZHJ0_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHJ0_9STRA) HSP 1 Score: 119 bits (297), Expect = 9.810e-27 Identity = 71/122 (58.20%), Postives = 81/122 (66.39%), Query Frame = 1 Query: 1 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVPGMVVPLDSTPGDPTAVTLSCNDVGTLAIFYRRRRTRSAVDVDSERTNAGI 366 MSRDTQALLHALAEQSSQ SYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGD +++VP P P ++ D F R + R+A++ D NAG+ Sbjct: 1 MSRDTQALLHALAEQSSQSSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDVSAYRCIALSQVPRPSPASAKPPAPPELSVVNEPD------FRRLQWGRTAINAD-RAFNAGV 115
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A835ZEG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG1_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.970e-26 Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 1 Query: 1 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVP 216 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGD + +VP Sbjct: 167 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDVSAYRRIALLQVP 238
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A835YMN2_9STRA (Polycystin cation channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMN2_9STRA) HSP 1 Score: 118 bits (296), Expect = 4.380e-25 Identity = 74/134 (55.22%), Postives = 83/134 (61.94%), Query Frame = 1 Query: 1 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVPGMVVPLDSTPGDPTAVTLSCNDVGTLAIFYRRRRTRSAVDVDSER---TNAGILAAVHESVR 393 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGD + +VP P P ++ VG A R T+ D R T++G A +V+ Sbjct: 161 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDVSAYRRIALLQVPRPSPASAEPPAPPASMQRMMAAVGAQA---RNLATKVGQGADEARKLVTDSGDEVARRHNVK 291
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A835ZH42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH42_9STRA) HSP 1 Score: 116 bits (290), Expect = 7.430e-25 Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 1 Query: 1 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVP 216 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGD + +VP Sbjct: 394 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDVSAYRRIALLQVP 465
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A835Z6X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X8_9STRA) HSP 1 Score: 109 bits (272), Expect = 8.870e-25 Identity = 61/85 (71.76%), Postives = 64/85 (75.29%), Query Frame = 1 Query: 1 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGDRDESGAWKIARVPGMVVPLDSTPGDP 255 MSRDTQALLHALAEQSSQGSYNL QRVAFWRRRTSLALQRALTRVVIDNWNA IAP GD + +VP P + P P Sbjct: 84 MSRDTQALLHALAEQSSQGSYNLTQRVAFWRRRTSLALQRALTRVVIDNWNAGIAPAGDVSAYRRIALLQVP-RPSPASAEPPPP 167
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Match: A0A835Z3E8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E8_9STRA) HSP 1 Score: 110 bits (276), Expect = 9.620e-25 Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 1 Query: 1 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWNAVIAPDGD 177 MSRDTQALLHALAEQSSQGSYNLAQRVAFWR RTSL LQRALTRVVIDNWNAVIAPDGD Sbjct: 56 MSRDTQALLHALAEQSSQGSYNLAQRVAFWRCRTSLTLQRALTRVVIDNWNAVIAPDGD 114 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339741 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14920 ID=mRNA_14920|Name=jgi.p|Trimin1|339741|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1224bp|location=Sequence derived from alignment at Contig_98:390730..392743+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCACGCGACACCCAAGCGCTGCTACACGCACTCGCCGAGCAGAGCTCback to top protein sequence of jgi.p|Trimin1|339741 >Trimin1|339741|MIX48504_3_28 ID=Trimin1|339741|MIX48504_3_28|Name=jgi.p|Trimin1|339741|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=408bp MSRDTQALLHALAEQSSQGSYNLAQRVAFWRRRTSLALQRALTRVVIDNWback to top mRNA from alignment at Contig_98:390730..392743+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14920 ID=mRNA_14920|Name=jgi.p|Trimin1|339741|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2014bp|location=Sequence derived from alignment at Contig_98:390730..392743+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_98:390730..392743+ >mRNA_14920 ID=mRNA_14920|Name=jgi.p|Trimin1|339741|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1224bp|location=Sequence derived from alignment at Contig_98:390730..392743+ (Tribonema minus UTEX_B_3156 )back to top |